scholarly journals Complete Genome Sequence of the Naphthalene-Degrading Pseudomonas putida Strain ND6

2012 ◽  
Vol 194 (18) ◽  
pp. 5154-5155 ◽  
Author(s):  
Shanshan Li ◽  
Huabing Zhao ◽  
Yaxiao Li ◽  
Shumin Niu ◽  
Baoli Cai
Keyword(s):  
Pseudomonas Putida ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Content Type ◽  
Degrading Bacterium ◽  
Genes Encoding ◽  
Chromosomal Sequence

ABSTRACTPseudomonas putidastrain ND6 is an efficient naphthalene-degrading bacterium. The complete genome of strain ND6 was sequenced and annotated. The genes encoding the enzymes involved in catechol degradation by theortho-cleavage pathway were found in the chromosomal sequence, which indicated that strain ND6 is able to metabolize naphthalene by the catecholmeta- andortho-cleavage pathways.

scholarly journals Complete Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas putida KF715 (NBRC 110667) Isolated from Biphenyl-Contaminated Soil

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Hikaru Suenaga ◽  
Atsushi Yamazoe ◽  
Akira Hosoyama ◽  
Nobutada Kimura ◽  
Jun Hirose ◽  
...  
Keyword(s):  
Pseudomonas Putida ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Polychlorinated Biphenyl ◽  
Sole Source ◽  
Circular Chromosome ◽  
Content Type ◽  
Degrading Bacterium ◽  
Catabolic Genes

ABSTRACT Pseudomonas putida KF715 (NBRC 110667) utilizes biphenyl as a sole source of carbon and degrades polychlorinated biphenyls (PCBs). Here, we report a complete genome sequence of the KF715 strain, which comprises a circular chromosome and four plasmids. Biphenyl catabolic genes were located on the largest plasmid, pKF715A.

scholarly journals Complete Genome Sequence of the Naphthalene-Degrading Bacterium Pseudomonas stutzeri AN10 (CCUG 29243)

2012 ◽  
Vol 194 (23) ◽  
pp. 6642-6643 ◽  
Author(s):  
Isabel Brunet-Galmés ◽  
Antonio Busquets ◽  
Arantxa Peña ◽  
Margarita Gomila ◽  
Balbina Nogales ◽  
...  
Keyword(s):  
Gene Transfer ◽  
Horizontal Gene Transfer ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pseudomonas Stutzeri ◽  
Content Type ◽  
Naphthalene Degradation ◽  
Degrading Bacterium ◽  
Model Strain

ABSTRACTPseudomonas stutzeriAN10 (CCUG 29243) can be considered a model strain for aerobic naphthalene degradation. We report the complete genome sequence of this bacterium. Its 4.71-Mb chromosome provides insights into other biodegradative capabilities of strain AN10 (i.e., benzoate catabolism) and suggests a high number of horizontal gene transfer events.

scholarly journals Complete Genome Sequence and Annotation of Campylobacter jejuni YH003, Isolated from Retail Chicken

2020 ◽  
Vol 9 (4) ◽  
Author(s):  
Yiping He ◽  
Sue Reed ◽  
Terence P. Strobaugh
Keyword(s):  
Campylobacter Jejuni ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Vi Secretion System ◽  
Multidrug Efflux ◽  
Content Type ◽  
Resistance Factors ◽  
Genes Encoding ◽  
Multidrug Efflux System

The complete genome sequence of Campylobacter jejuni YH003, isolated from retail chicken, was determined using PacBio and Illumina technologies. The assembled genome is 1,743,985 bp (G+C content of 30.3%). Genome annotation revealed several genes encoding virulence and antibiotic resistance factors, including a type VI secretion system, cytolethal distending toxins, and a multidrug efflux system.

scholarly journals Complete Genome Sequence of Pseudomonas putida Strain TS312, Harboring an HdtS-Type N-Acyl-Homoserine Lactone Synthase, Isolated from a Paper Mill

2020 ◽  
Vol 9 (13) ◽  
Author(s):  
Ayaka Hosoe ◽  
Toshikazu Suenaga ◽  
Takumi Sugi ◽  
Taro Iizumi ◽  
Naohiro Nagai ◽  
...  
Keyword(s):  
Pseudomonas Putida ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Paper Mill ◽  
Homoserine Lactone ◽  
Acyl Homoserine Lactone ◽  
Gene Encoding ◽  
Content Type ◽  
Engineered Systems

We report the complete genome sequence of Pseudomonas putida strain TS312, in the class of Gammaproteobacteria. The strain, isolated from a paper mill, harbors the hdtS gene, encoding N-acyl-homoserine lactone synthase. Deciphering the genome contributes to revealing the mechanisms of quorum sensing and associated biofilm formation in engineered systems.

scholarly journals Complete Genome Sequence of Potential Deoxynivalenol-Degrading Bacterium Youhaiella tibetensis Type Strain F4

2019 ◽  
Vol 8 (40) ◽  
Author(s):  
Yang Wang ◽  
Songxue Wang
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Culture Collection ◽  
Content Type ◽  
Microbiological Culture ◽  
Degrading Bacterium

Here, we report the first complete genome sequence of the potential deoxynivalenol-degrading strain Youhaiella tibetensis F4T (China General Microbiological Culture Collection Center [CGMCC] 1.12719T). To the best of our knowledge, this is also the first announcement of the complete genome sequence of a Youhaiella species.

scholarly journals Complete Genome Sequence of Bacillus vallismortis NBIF-001, a Novel Strain from Shangri-La, China, That Has High Activity against Fusarium oxysporum

2017 ◽  
Vol 5 (48) ◽  
Author(s):  
Xiaoyan Liu ◽  
Yong Min ◽  
Daye Huang ◽  
Ronghua Zhou ◽  
Wei Fang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Positive Bacterium ◽  
Protein Coding ◽  
Content Type ◽  
Number Of Genes ◽  
Genes Encoding ◽  
Bacillus Vallismortis ◽  
Rna Genes

ABSTRACT Bacillus vallismortis NBIF-001, a Gram-positive bacterium, was isolated from soil in Shangri-La, China. Here, we provide the complete genome sequence of this bacterium, which has a 3,929,787-bp-long genome, including 4,030 protein-coding genes and 195 RNA genes. This strain possesses a number of genes encoding virulence factors of pathogens.

scholarly journals Complete Genome Sequence of the Marine Hydrocarbon Degrader Alcaligenes aquatilis QD168, Isolated from Crude Oil-Polluted Sediment of Quintero Bay, Central Chile

2019 ◽  
Vol 8 (5) ◽  
Author(s):  
Roberto E. Durán ◽  
Bárbara Barra-Sanhueza ◽  
Francisco Salvà-Serra ◽  
Valentina Méndez ◽  
Daniel Jaén-Luchoro ◽  
...  
Keyword(s):  
Crude Oil ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Central Chile ◽  
Coding Sequences ◽  
Content Type ◽  
Polluted Sediment ◽  
Degrading Bacterium ◽  
Hydrocarbon Degrader

Alcaligenes aquatilis strain QD168 (= CCUG 69566) is a marine hydrocarbon-degrading bacterium isolated from crude oil-polluted sediment from Quintero Bay, Central Chile. Here, we present the 4.32-Mb complete genome sequence of strain QD168, with 3,892 coding sequences, 58 tRNAs, and a 56.3% G+C content.

scholarly journals Complete Genome Sequence of GD1696, a Low-Virulence Strain of Human-Associated ST398 Methicillin-Susceptible Staphylococcus aureus

2019 ◽  
Vol 8 (28) ◽  
Author(s):  
Jo-Ann McClure ◽  
Steven M. Shideler ◽  
Kunyan Zhang
Keyword(s):  
Staphylococcus Aureus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sequence Type ◽  
Content Type ◽  
Mssa Strain ◽  
Chromosomal Sequence

The emerging livestock-associated Staphylococcus aureus multilocus sequence type 398 (ST398) appears to have augmented virulence in humans. However, it is unclear if all ST398 strains are equally virulent. Here, we present the chromosomal sequence of a low-virulence ST398 methicillin-susceptible S. aureus (MSSA) strain, GD1696, to investigate ST398 sublineage virulence.

scholarly journals Complete Genome Sequence of Altererythrobacter sp. Strain B11, an Aromatic Monomer-Degrading Bacterium, Isolated from Deep-Sea Sediment under the Seabed off Kashima, Japan

2018 ◽  
Vol 6 (12) ◽  
Author(s):  
Allyn H. Maeda ◽  
Shinro Nishi ◽  
Shun'ichi Ishii ◽  
Yasuhiro Shimane ◽  
Hideki Kobayashi ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Deep Sea ◽  
Complete Nucleotide Sequence ◽  
Complete Genome ◽  
Content Type ◽  
Deep Sea Sediment ◽  
Degrading Bacterium ◽  
Aromatic Monomer

ABSTRACT Altererythrobacter sp. strain B11 is an aromatic monomer-degrading bacterium newly isolated from sediment under the seabed off Kashima, Japan, at a depth of 2,100 m. Here, we report the complete nucleotide sequence of the genome of strain B11.

scholarly journals Complete Genome Sequence of Actinomyces hongkongensis HKU8T Isolated from Human Blood

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Yan-xia Gao ◽  
Yu-yan Zhou ◽  
Ying Xie ◽  
Man Wang ◽  
Shu-juan Wang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Human Blood ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Human Diseases ◽  
Circular Chromosome ◽  
Content Type ◽  
Genes Encoding

ABSTRACT Members of the genus Actinomyces are strongly associated with human diseases. We present here the complete genome sequence of Actinomyces hongkongensis HKU8T, which consists of one circular chromosome. The strain characteristically contains various genes encoding for enzymes involved in arylamidase utilization.

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