scholarly journals Viral Metagenomic Analysis Reveals a Human Rhinovirus from Hospitalized Neonates

2021 ◽  
Vol 10 (15) ◽  
Author(s):  
Hong Li ◽  
Yuqing Xiao ◽  
Jinquan Lü ◽  
Wen Zhang ◽  
Hongyan Lu
Keyword(s):  
Complete Genome ◽  
Human Rhinovirus ◽  
Metagenomic Analysis ◽  
Pcr Screening ◽  
Nasopharyngeal Secretion

ABSTRACT Here, the coding-complete genome of a human rhinovirus (HRV) belonging to the HRV-A clade was determined from a pool containing nine nasopharyngeal secretion specimens from hospitalized neonates. PCR screening indicated that this HRV variant was present in a cohort of 45 hospitalized neonates, with a positivity rate of 11.1% (5/45 patients).

scholarly journals Metagenomic Analysis Reveals a Nearly Complete Genome Sequence of Alfalfa Mosaic Virus from a Field Pea in Australia

2019 ◽  
Vol 8 (31) ◽  
Author(s):  
S. Maina ◽  
L. Zheng ◽  
W. M. Kinoti ◽  
M. Aftab ◽  
N. Nancarrow ◽  
...  
Keyword(s):  
Mosaic Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Alfalfa Mosaic Virus ◽  
Field Pea ◽  
Metagenomic Analysis ◽  
Chinese Isolate

Here, we report the first nearly complete genome sequence of Alfalfa mosaic virus (AMV) obtained from a symptomatic field pea sample (Aus295) in Australia. Its genome RNA1 and RNA2 segments resembled those of the Argentinian isolate Manfredi, with 99.4% and 96.7% nucleotide (nt) identity, respectively; its RNA3 segment resembled that of Chinese isolate AMV-Gyn, with 99.6% nt identity.

Metagenomic Analysis Identified Human Rhinovirus B91 Infection in an Adult Suffering from Severe Pneumonia

2017 ◽  
Vol 195 (11) ◽  
pp. 1535-1536 ◽  
Author(s):  
Fugui Yan ◽  
Yan Xiao ◽  
Mingkun Li ◽  
Hao Zhang ◽  
Rong Zhang ◽  
...  
Keyword(s):  
Severe Pneumonia ◽  
Human Rhinovirus ◽  
Metagenomic Analysis

scholarly journals Metagenomic analysis identified co-infection with human rhinovirus C and bocavirus 1 in an adult suffering from severe pneumonia

2018 ◽  
Vol 76 (3) ◽  
pp. 311-313 ◽  
Author(s):  
Yanpeng Li ◽  
Xilong Deng ◽  
Fengyu Hu ◽  
Jian Wang ◽  
Ying Liu ◽  
...  
Keyword(s):  
Severe Pneumonia ◽  
Human Rhinovirus ◽  
Metagenomic Analysis ◽  
Rhinovirus C

scholarly journals Comparative Genetic Analyses of Human Rhinovirus C (HRV-C) Complete Genome from Malaysia

2016 ◽  
Vol 7 ◽  
Author(s):  
Yam Sim Khaw ◽  
Yoke Fun Chan ◽  
Faizatul Lela Jafar ◽  
Norlijah Othman ◽  
Hui Yee Chee
Keyword(s):  
Complete Genome ◽  
Human Rhinovirus ◽  
Genetic Analyses ◽  
Rhinovirus C

Complete genome sequence of a novel human papillomavirus identified by metagenomic analysis from a child with diarrhea in China

2014 ◽  
Vol 160 (2) ◽  
pp. 549-552 ◽  
Author(s):  
Jie-mei Yu ◽  
Guoyan Zhao ◽  
Yuan-yun Ao ◽  
Li-li Li ◽  
David Wang ◽  
...  
Keyword(s):  
Human Papillomavirus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Metagenomic Analysis

scholarly journals Complete Genome Sequence of a Divergent Human Rhinovirus C Isolate from an Infant with Severe Community-Acquired Pneumonia in Colorado, USA

2017 ◽  
Vol 5 (48) ◽  
Author(s):  
Charles Langelier ◽  
Corin V. White ◽  
Marci K. Sontag ◽  
Peter M. Mourani ◽  
Joseph L. DeRisi
Keyword(s):  
Rna Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
De Novo ◽  
Community Acquired Pneumonia ◽  
Human Rhinovirus ◽  
Illumina Platform ◽  
Severe Community Acquired Pneumonia ◽  
Rhinovirus C

ABSTRACT Here, we report the genome sequence of a divergent human rhinovirus C isolate identified from an infant with a severe community-acquired respiratory infection. RNA sequencing performed on an Illumina platform identified reads aligning to human rhinovirus species, which were de novo assembled to produce a coding-complete genome sequence.

scholarly journals Analysis of the complete genome sequences of human rhinovirus

2010 ◽  
Vol 125 (6) ◽  
pp. 1190-1199 ◽  
Author(s):  
Ann C. Palmenberg ◽  
Jennifer A. Rathe ◽  
Stephen B. Liggett
Keyword(s):  
Complete Genome ◽  
Human Rhinovirus ◽  
Genome Sequences

scholarly journals Viral Metagenomic Analysis of Aedes albopictus Mosquitos from Southern Switzerland

Viruses ◽  
2020 ◽  
Vol 12 (9) ◽  
pp. 929 ◽  
Author(s):  
Jakub Kubacki ◽  
Eleonora Flacio ◽  
Weihong Qi ◽  
Valeria Guidi ◽  
Mauro Tonolla ◽  
...  
Keyword(s):  
Aedes Albopictus ◽  
Complete Genome ◽  
Potential Role ◽  
Metagenomic Analysis ◽  
Zoonotic Viruses ◽  
Pathogenic Viruses ◽  
Metagenomic Study ◽  
Aedes Flavivirus ◽  
Local Transmission

A metagenomic study was performed on 498 female and 40 male Aedes albopictus mosquitos collected in August and September 2019 in Ticino, a region in southern Switzerland, to address the question regarding the risk of the local transmission of zoonotic viruses. A total of 13 viruses from seven different virus families and several unclassified viral taxa were identified. Reads of insect-specific flaviviruses were present in all pools, and a complete genome of aedes flavivirus was assembled and phylogenetically analysed. The most abundant virus was Wenzhou sobemo-like virus, assembled from 1.3 × 105 to 3.6 × 106 reads in each pool. In a pool of male mosquitos, a complete genome of aedes Iflavi-like virus was detected and phylogenetically analysed. Most importantly, genomes of human pathogenic viruses were not found. This is the first study to determine the virome of Ae. albopictus from Switzerland and forms a baseline for future longitudinal investigations concerning the potential role of Ae. albopictus as a vector of clinically relevant viruses.

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