scholarly journals Complete Genome Analysis of Flavobacterium psychrophilum Strain FPRT1, Isolated from Diseased Rainbow Trout (Oncorhynchus mykiss) in South Korea

2021 ◽  
Vol 10 (12) ◽  
Author(s):  
Jiyeon Park ◽  
HyeongJin Roh ◽  
Yoonhang Lee ◽  
Junewoo Park ◽  
Do-Hyung Kim
Keyword(s):  
Rainbow Trout ◽  
Oncorhynchus Mykiss ◽  
Complete Genome ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Flavobacterium Psychrophilum ◽  
Rainbow Trout Oncorhynchus Mykiss ◽  
Pacbio Rs Ii ◽  
Complete Genome Analysis

ABSTRACT Here, we report the complete genome sequence of Flavobacterium psychrophilum FPRT1, isolated from the spleen and kidney of diseased rainbow trout (Oncorhynchus mykiss). Whole-genome sequencing was performed using the PacBio RS II platform, which yielded a circular chromosome of 2,795,347 bp harboring 2,895 protein-coding genes.

scholarly journals Analysis of the Microbiome of Rainbow Trout (Oncorhynchus mykiss) Exposed to the Pathogen Flavobacterium psychrophilum 10094

2020 ◽  
Vol 9 (12) ◽  
Author(s):  
Natalia Valdés ◽  
Alex Gonzalez ◽  
Veronica Garcia ◽  
Mario Tello
Keyword(s):  
Rainbow Trout ◽  
16S Rrna ◽  
Oncorhynchus Mykiss ◽  
Microbial Composition ◽  
Content Type ◽  
Flavobacterium Psychrophilum ◽  
Rainbow Trout Oncorhynchus Mykiss

Rainbow trout that were resistant or susceptible to Flavobacterium psychrophilum infection were compared with respect to their microbial composition by using 16S rRNA V3-V4 sequencing. The differences occurred in gills, where resistant fish displayed a greater abundance of the phylum Proteobacteria and a smaller proportion of Firmicutes relative to those of susceptible fish.

Intramuscular challenge of rainbow trout (Oncorhynchus mykiss) with two Norwegian field strains of Flavobacterium psychrophilum

2013 ◽  
Vol 35 (2) ◽  
pp. 595-598 ◽  
Author(s):  
Børge N. Fredriksen ◽  
Anette Furevik ◽  
David Gauthier ◽  
Marie Egenberg ◽  
Erik D. Paulsen ◽  
...  
Keyword(s):  
Rainbow Trout ◽  
Oncorhynchus Mykiss ◽  
Flavobacterium Psychrophilum ◽  
Rainbow Trout Oncorhynchus Mykiss

scholarly journals Complete Genome Sequence of Bifidobacterium longum Strain Jih1, Isolated from Human Feces

2020 ◽  
Vol 9 (22) ◽  
Author(s):  
Hikaru Inoue ◽  
Sayaka Shibata ◽  
Konosuke Ii ◽  
Joe Inoue ◽  
Shinji Fukuda ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bifidobacterium Longum ◽  
Human Feces ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT We report the complete genome sequence of Bifidobacterium longum strain Jih1, isolated from human feces. The assembled genome comprised one circular chromosome of 2.37 Mb. The chromosome harbors 1,941 protein-coding genes.

scholarly journals Complete Genome Sequence of Lactobacillus plantarum Strain LQ80, Selected for Preparation of Fermented Liquid Feed for Pigs

2018 ◽  
Vol 6 (25) ◽  
Author(s):  
Naoko Moriya ◽  
Kazuma Nakano ◽  
Akino Shiroma ◽  
Misuzu Shinzato ◽  
Noriko Ashimine ◽  
...  
Keyword(s):  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Circular Chromosome ◽  
Content Type ◽  
Liquid Feed ◽  
Pacbio Rs Ii ◽  
Single Circular Chromosome

ABSTRACT Lactobacillus plantarum LQ80 is a strain isolated from liquid feed for pigs. We determined the complete genome sequence of this strain using the PacBio RS II platform. LQ80 contained a single circular chromosome of 3,230,192 bp, with 44.66% G+C content and seven plasmids.

scholarly journals Complete Genome Sequence of Brevundimonas sp. Strain SGAir0440, Isolated from Indoor Air in Singapore

2019 ◽  
Vol 8 (31) ◽  
Author(s):  
Rikky W. Purbojati ◽  
Daniela I. Drautz-Moses ◽  
Akira Uchida ◽  
Anthony Wong ◽  
Megan E. Clare ◽  
...  
Keyword(s):  
Single Molecule ◽  
Indoor Air ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sequencing Data ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Air Samples ◽  
Protein Coding Genes

Brevundimonas sp. strain SGAir0440 was isolated from indoor air samples collected in Singapore. Its genome was assembled using single-molecule real-time sequencing data, resulting in one circular chromosome with a length of 3.1 Mbp. The genome consists of 3,033 protein-coding genes, 48 tRNAs, and 6 rRNA operons.

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