scholarly journals Draft Genome Sequence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Strain from a Returned Traveler from Pakistan

2020 ◽  
Vol 9 (31) ◽  
Author(s):  
Samantha Hao ◽  
Tess Veuthey ◽  
Saharai Caldera ◽  
Paula Hayakawa Serpa ◽  
Barbara Haller ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Salmonella Enterica ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Drug Resistant ◽  
Content Type ◽  
Salmonella Enterica Serovar Typhi ◽  
Extensively Drug Resistant

ABSTRACT We report a draft genome sequence of extensively drug-resistant (XDR) Salmonella enterica serotype Typhi isolated from a returned traveler from Pakistan who developed sepsis. Whole-genome sequencing revealed relatedness to a previously reported outbreak in Pakistan and identified the blaCTX-M-15 and qnrS resistance genes.

scholarly journals Importation of Extensively Drug-Resistant Salmonella enterica Serovar Typhi Cases in Ontario, Canada

2020 ◽  
Vol 64 (5) ◽  
Author(s):  
Alireza Eshaghi ◽  
Sandra Zittermann ◽  
Amrita Bharat ◽  
Michael R. Mulvey ◽  
Vanessa G. Allen ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Salmonella Enterica ◽  
Bloodstream Infections ◽  
Whole Genome ◽  
Drug Resistant ◽  
Outbreak Strain ◽  
Travel History ◽  
Content Type ◽  
Salmonella Enterica Serovar Typhi ◽  
Extensively Drug Resistant

ABSTRACT A strain of extensively drug-resistant (XDR) Salmonella enterica serovar Typhi has caused a large ongoing outbreak in Pakistan since 2016. In Ontario, Canada, 10 cases of mainly bloodstream infections (n = 9) were identified in patients who traveled to Pakistan. Whole-genome sequencing showed that Canadian cases were genetically related to the Pakistan outbreak strain. The appearance of XDR typhoid cases in Ontario prompted a provincial wide alert to physicians to recommend treatment with carbapenems or azithromycin in suspected typhoid cases with travel history to Pakistan.

scholarly journals Draft Genome Sequence of a Mycobacterium porcinum Strain Isolated from a Pet Cat with Atypical Mycobacterial Panniculitis

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
Anthony Mannion ◽  
Tina McCollester ◽  
Alexander Sheh ◽  
Zeli Shen ◽  
Hilda Holcombe ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Fast Growing

A fast-growing Mycobacterium species was cultured from draining, purulent lesions on the caudal abdomen of a 12-year-old male domestic long-haired cat. Whole-genome sequencing identified the organism as Mycobacterium porcinum.

scholarly journals Draft Genome Sequence of Clostridium sp. Strain chh4-2 Isolated from Human Feces

2018 ◽  
Vol 6 (8) ◽  
Author(s):  
Chien-Hsun Huang ◽  
Jong-Shian Liou ◽  
Chun-Lin Wang ◽  
Lina Huang
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Fecal Sample ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Human Feces ◽  
Content Type ◽  
Old Adult

ABSTRACT Here, we report the draft genome sequence of a Clostridium sp. strain isolated from a fecal sample of a 34-year-old adult male in Taiwan. This strain may represent a new bacterium, as suggested by a comparison based on whole-genome sequencing. The genome assembly comprised 6,089,737 bp, with a 45.63% G+C content.

scholarly journals Draft Genome Sequence of an Isolate of Extensively Drug-Resistant Mycobacterium tuberculosis from Nepal

2020 ◽  
Vol 9 (4) ◽  
Author(s):  
Sanjay S. Gautam ◽  
Kelvin W. C. Leong ◽  
Manoj Pradhan ◽  
Y. Ibotomba Singh ◽  
Sagar K. Rajbhandari ◽  
...  
Keyword(s):  
Mycobacterium Tuberculosis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Drug Resistant ◽  
Single Nucleotide ◽  
Content Type ◽  
Extensively Drug Resistant ◽  
Drug Resistant Phenotype ◽  
First Time

Extensively drug-resistant (XDR) Mycobacterium tuberculosis has become a challenge to the treatment of tuberculosis (TB) in several countries, including Nepal. Here, we report for the first time the draft genome sequence of an isolate of XDR-TB collected in Nepal and describe single-nucleotide variations associated with its extensively drug-resistant phenotype.

scholarly journals Draft Genome Sequence of the Extensively Drug-Resistant Pseudomonas aeruginosa Clinical Isolate TUEPA7472

2018 ◽  
Vol 7 (12) ◽  
Author(s):  
Henrike Miess ◽  
Ghazaleh Jahanshah ◽  
Heike Brötz-Oesterhelt ◽  
Matthias Willmann ◽  
Silke Peter ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Genome Sequence ◽  
Draft Genome ◽  
Resistance Mechanisms ◽  
Draft Genome Sequence ◽  
Drug Resistant ◽  
Gram Negative ◽  
Content Type ◽  
Extensively Drug Resistant ◽  
Insight Into

Pseudomonas aeruginosa TUEPA7472 is extensively drug resistant (XDR) and is a representative Gram-negative rod that is multiresistant toward 4 classes of clinically relevant antibiotics (4MRGN). The 6.8-Mb draft genome sequence of this strain provides insight into these resistance mechanisms and the potential of the strain to produce virulence factors.

scholarly journals Draft Genome Sequence of Weissella viridescens UCO-SMC3, Isolated from the Slime of Helix aspersa Müller Snails

2019 ◽  
Vol 8 (11) ◽  
Author(s):  
Apolinaria Garcia-Cancino ◽  
Leonardo Albarracin ◽  
Marcela Espinoza-Monje ◽  
Jorge Campos-Martin ◽  
Valeria Garcia-Castillo ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Helix Aspersa ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Content Type

This report describes the draft genome sequence of Weissella viridescens UCO-SMC3, isolated from Helix aspersa Müller slime. The reads were generated by a whole-genome sequencing (WGS) strategy on an Illumina MiSeq sequencer and were assembled into contigs with a total estimated size of 1,612,814 bp.

scholarly journals Draft Genome Sequence of Salmonella enterica Serovar Typhi IMR_TP298/15, a Strain with Intermediate Susceptibility to Ciprofloxacin, Isolated from a Typhoid Outbreak

2017 ◽  
Vol 5 (9) ◽  
Author(s):  
Norazah Ahmad ◽  
Shirley Yi Fen Hii ◽  
Rohaidah Hashim ◽  
Rahizan Issa
Keyword(s):  
Genome Sequence ◽  
Salmonella Enterica ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Salmonella Enterica Serovar Typhi

ABSTRACT Salmonella enterica serovar Typhi with reduced susceptibility to ciprofloxacin is increasingly being reported globally. An outbreak caused by Salmonella Typhi with decreased ciprofloxacin susceptibility has not been reported before in Malaysia. We present here the annotated draft genome of a Salmonella Typhi strain involved in a typhoid outbreak.

scholarly journals Whole-Genome Sequence of Salmonella enterica subsp. diarizonae Serovar 61:k:1,5,(7) Strain 1569 (14PM0011), Isolated from German Sheep

2019 ◽  
Vol 8 (38) ◽  
Author(s):  
Anne Busch ◽  
Herbert Tomaso ◽  
Ulrich Methner
Keyword(s):  
Genome Sequence ◽  
Salmonella Enterica ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type

Here, we report the draft genome sequence of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) strain 1569, alternatively named 14PM0011, which is a common serovar in German sheep that is unrepresented in the databases and considered and described as being host adapted with low virulence.

scholarly journals Draft Genome Sequence of an Extensively Drug-Resistant Mycobacterium tuberculosis Clinical Isolate, 3485_MTB, from Nur-Sultan, Kazakhstan

2020 ◽  
Vol 9 (10) ◽  
Author(s):  
Pavel Tarlykov ◽  
Sabina Atavliyeva ◽  
Arike Alenova ◽  
Yerlan Ramankulov
Keyword(s):  
Mycobacterium Tuberculosis ◽  
Clinical Isolate ◽  
Genome Sequence ◽  
Draft Genome ◽  
Genetic Variations ◽  
Draft Genome Sequence ◽  
Drug Resistant ◽  
Content Type ◽  
Extensively Drug Resistant

Here, we report the draft genome sequence of an extensively drug-resistant Mycobacterium tuberculosis clinical isolate, 3485_MTB, from Nur-Sultan, Kazakhstan. The genome sequence is composed of 4,836,003 bp. The genome will provide more data on the genetic variations occurring in local drug-resistant isolates.

scholarly journals Draft Genome Sequence of Leptospira yasudae Strain BJ3, Isolated from the Soil of an Ex Situ Wild Animal Conservation Area

2021 ◽  
Vol 10 (39) ◽  
Author(s):  
Nadia Aqilla Shamsusah ◽  
Hani Kartini Agustar ◽  
Fairuz Amran ◽  
Rozita Hod
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Wild Animal ◽  
Ex Situ ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Animal Conservation ◽  
Conservation Area ◽  
Content Type

Previously, a novel Leptospira strain (BJ3) was isolated from the soil of an ex situ wild animal conservation area in Perak, Malaysia. Molecular identification via whole-genome sequencing confirmed that the strain was Leptospira yasudae . Here, we report the draft genome sequence of L. yasudae strain BJ3.

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