scholarly journals Complete Genome Assembly of Yersinia pestis subsp. pestis bv. Medievalis SCPM-O-B-6530, a Proline-Dependent Strain Isolated from the Central-Caucasian High-Mountain Plague Focus in Kabardino-Balkar Republic (Russia)

2022 ◽  
Author(s):  
Angelina A. Kislichkina ◽  
Elizaveta M. Mazurina ◽  
Mikhail E. Platonov ◽  
Yury P. Skryabin ◽  
Angelika A. Sizova ◽  
...  
Keyword(s):  
Yersinia Pestis ◽  
Genome Assembly ◽  
Complete Genome ◽  
Phylogenetic Group ◽  
High Mountain ◽  
Content Type ◽  
Dependent Strain ◽  
Group 2

We report the complete genome assembly of Yersinia pestis subsp. pestis bv. Medievalis SCPM-O-B-6530, a strain belonging to the most ancient phylogenetic group (group 2.MED0) of Y. pestis subsp. pestis bv. Medievalis. This proline-dependent strain, carrying an additional plasmid (pCKF), was isolated from the Central-Caucasian high-mountain plague focus in Kabardino-Balkar Republic, Russia.

scholarly journals Complete Genome Assembly of Yersinia pseudotuberculosis IP2666pIB1

2019 ◽  
Vol 8 (7) ◽  
Author(s):  
Adam Zoubeidi ◽  
Leah Schwiesow ◽  
Victoria Auerbuch ◽  
Hanh N. Lam
Keyword(s):  
Yersinia Pestis ◽  
Genome Assembly ◽  
Complete Genome ◽  
Yersinia Pseudotuberculosis ◽  
Model Organism ◽  
Genomic Analysis ◽  
Bacterial Pathogenesis ◽  
Bacterial Virulence ◽  
Human Pathogen ◽  
Content Type

Yersinia pseudotuberculosis, closely related to Yersinia pestis, is a human pathogen and model organism for studying bacterial pathogenesis. To aid in genomic analysis and understanding bacterial virulence, we sequenced and assembled the complete genome of the human pathogen Yersinia pseudotuberculosis IP2666pIB1.

scholarly journals Complete Genome Sequencing of 10 Brucella abortus Biovar 3 Strains Isolated from Water Buffalo

2018 ◽  
Vol 6 (16) ◽  
pp. e00180-18 ◽  
Author(s):  
Rubina Paradiso ◽  
Massimiliano Orsini ◽  
Daniela Criscuolo ◽  
Rosanna Borrelli ◽  
Ornella Valvini ◽  
...  
Keyword(s):  
Latin America ◽  
Central Asia ◽  
Genome Sequencing ◽  
Genome Assembly ◽  
Brucella Abortus ◽  
Complete Genome ◽  
Water Buffalo ◽  
Mediterranean Area ◽  
Campania Region ◽  
Content Type

ABSTRACT Brucellosis is a zoonotic disease that affects both humans and animals. Its distribution is global, concentrated in the Mediterranean area, India, Central Asia, and Latin America. Here, we present a complete genome assembly of 10 Brucella abortus strains isolated from water buffaloes farmed in the Campania region of Italy.

scholarly journals Complete Genome Sequence of Bacillus velezensis Strain DKU_NT_04, Isolated from a Traditional Korean Food Made from Soybeans (Cheonggukjang)

2020 ◽  
Vol 9 (24) ◽  
Author(s):  
Man-Seok Bang ◽  
Hee-Won Jeong ◽  
Yea-Jin Lee ◽  
Sang-Cheol Lee ◽  
Gi Soo Lee ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bacillus Velezensis ◽  
Coding Sequences ◽  
Content Type ◽  
Fermented Soybean ◽  
Soybean Paste ◽  
Korean Food

ABSTRACT In the present work, we report the complete genome sequence of Bacillus velezensis DKU_NT_04, isolated from cheonggukjang, which is a traditional Korean fermented soybean paste. The final genome assembly consists of a 4.328-Mbp chromosome with 4,134 coding sequences and a G+C content of 45.21%.

scholarly journals Complete Genome Sequence of Buffalopox Virus

2018 ◽  
Vol 6 (21) ◽  
Author(s):  
Babak Afrough ◽  
Afia Zafar ◽  
Rumina Hasan ◽  
Roger Hewson
Keyword(s):  
Phylogenetic Analysis ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virus Isolate ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

ABSTRACT The first complete genome assembly of buffalopox virus isolate Karachi 2005, with a length of 195,630 bp, is presented here. Phylogenetic analysis shows the virus to cluster within Vaccinia species, and the genome contains 177 protein-coding sequences.

scholarly journals Telomere-to-Telomere Genome Assembly of Bursaphelenchus okinawaensis Strain SH1

2020 ◽  
Vol 9 (43) ◽  
Author(s):  
Simo Sun ◽  
Ryoji Shinya ◽  
Mehmet Dayi ◽  
Akemi Yoshida ◽  
Paul W. Sternberg ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bursaphelenchus Xylophilus ◽  
Laboratory Model ◽  
Content Type

ABSTRACT Bursaphelenchus okinawaensis is a self-fertilizing, hermaphroditic, fungus-feeding nematode used as a laboratory model for the genus Bursaphelenchus, which includes the important pathogen Bursaphelenchus xylophilus. Here, we report the nearly complete genome sequence of B. okinawaensis. The 70-Mbp assembly contained six scaffolds (>11 Mbp each) with telomere repeats on their ends, indicating complete chromosomes.

scholarly journals Complete Genome Assembly of Myxococcus xanthus Strain DZ2 Using Long High-Fidelity (HiFi) Reads Generated with PacBio Technology

2021 ◽  
Vol 10 (28) ◽  
Author(s):  
Rikesh Jain ◽  
Bianca H. Habermann ◽  
Tâm Mignot
Keyword(s):  
Genome Assembly ◽  
Complete Genome ◽  
Reference Genome ◽  
Myxococcus Xanthus ◽  
High Fidelity ◽  
High Quality ◽  
Microbial Ecosystem ◽  
Gram Negative ◽  
Content Type

Myxococcus xanthus is a Gram-negative social bacterium belonging to the order Myxococcales of the class Deltaproteobacteria . It is a facultative social predator found in soils across the globe and is thought to be crucial for the microbial ecosystem. Here, we report a complete high-quality reference genome of the M. xanthus strain DZ2.

scholarly journals Whole-Genome Assembly of Yersinia pestis 231, the Russian Reference Strain for Testing Plague Vaccine Protection

2021 ◽  
Vol 10 (5) ◽  
Author(s):  
Angelina A. Kislichkina ◽  
Ekaterina A. Krasil’nikova ◽  
Mikhail E. Platonov ◽  
Yury P. Skryabin ◽  
Angelika A. Sizova ◽  
...  
Keyword(s):  
Yersinia Pestis ◽  
Genome Sequencing ◽  
Genome Assembly ◽  
Reference Strain ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Vaccine Protection ◽  
Content Type ◽  
Oxford Nanopore ◽  
Plague Vaccine

ABSTRACT We report the whole-genome sequence of Yersinia pestis subsp. pestis bv. Antiqua strain 231 belonging to the 0.ANT3 phylogroup, the reference strain for testing plague vaccine protection in Russia. Genome sequencing was completed using the Oxford Nanopore MinION and Illumina platforms.

scholarly journals Complete Genome Assembly of Multidrug-Resistant Yersinia enterocolitica Y72, Isolated in Sweden

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Philip A. Karlsson ◽  
Tifaine Hechard ◽  
Cecilia Jernberg ◽  
Helen Wang
Keyword(s):  
Antibiotic Resistance ◽  
Yersinia Enterocolitica ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genetic Relatedness ◽  
Multidrug Resistant ◽  
Clinical Strain ◽  
Content Type ◽  
Future Studies

ABSTRACT Here, we report the complete genome sequence of a Swedish clinical strain of Yersinia enterocolitica, Y72. With emerging Yersinia outbreaks circulating in Nordic countries, the Y72 genome will provide more insights on the genetic relatedness and antibiotic resistance dissemination in future studies.

scholarly journals Complete Genome Sequence of Bacillus mycoides TH26, Isolated from a Permafrost Thaw Gradient

2019 ◽  
Vol 8 (24) ◽  
Author(s):  
Tracie Haan ◽  
Scout McDougall ◽  
Devin M. Drown
Keyword(s):  
Boreal Forest ◽  
Forest Soil ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Library Preparation ◽  
Bacillus Mycoides ◽  
Content Type ◽  
Permafrost Thaw ◽  
Long Read

Here, we describe the complete genome assembly of a Bacillus mycoides isolate collected from a boreal forest soil associated with permafrost thaw. Using only long-read Nanopore sequences and VolTRAX library preparation, we assembled two circular contigs totaling 5,789,722 bp (N 50, 5,306,036), a complete chromosome with one plasmid.

scholarly journals Draft Genome Sequence of Leishmania tarentolae Parrot Tar II, Obtained by Single-Molecule Real-Time Sequencing

2020 ◽  
Vol 9 (21) ◽  
Author(s):  
Yasuyuki Goto ◽  
Akihiro Kuroki ◽  
Kengo Suzuki ◽  
Junya Yamagishi
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Genome Assembly ◽  
Complete Genome ◽  
Draft Genome ◽  
Protozoan Parasite ◽  
Leishmania Tarentolae ◽  
Content Type ◽  
Genome Information

ABSTRACT Leishmania tarentolae is a protozoan parasite of lizards and is nonpathogenic to mammals. Genome information for the nonpathogenic species will facilitate an understanding of the pathology caused by species pathogenic to mammals. Here, we report resequencing of the L. tarentolae genome with a single-molecule real-time (SMRT) sequencer to provide a more complete genome assembly.

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