scholarly journals Near-Complete Genome Assembly of the Grapevine Crown Gall Pathogen Allorhizobium vitis Strain K377

2021 ◽  
Vol 10 (39) ◽  
Author(s):  
Hangwei Xi ◽  
Maarten Ryder ◽  
Iain R. Searle
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
South Australia ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Catabolic Genes ◽  
Allorhizobium Vitis ◽  
Grapevine Crown Gall

Here, we report the annotated, near-complete genome sequence of Allorhizobium vitis K377, a phytopathogenic Rhizobiales strain isolated from a grapevine in South Australia. The assembled genome sequence is 6.40 Mb long, with 5,855 predicted protein-coding sequences, 56 tRNAs, and 12 rRNAs, and contains ttuC (tartrate metabolism; chromosomal) and nopaline synthesis, uptake, and catabolic genes (tumor-inducing plasmid-encoded).

scholarly journals Complete Genome Sequence of Allorhizobium vitis Strain K306, the Causal Agent of Grapevine Crown Gall

2020 ◽  
Vol 9 (29) ◽  
Author(s):  
Hangwei Xi ◽  
Maarten Ryder ◽  
Iain R. Searle
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Crown Gall ◽  
Complete Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Allorhizobium Vitis ◽  
Grapevine Crown Gall ◽  
Circular Chromosomes

ABSTRACT Here, we present the annotated complete genome sequence of Allorhizobium vitis K306, a phytopathogenic strain causing crown gall of grapevine. The A. vitis K306 genome is 5.79 Mb long with 5,199 predicted protein-coding genes and contains 2 circular chromosomes of 3.8 Mb and 1.1 Mb and 2 plasmids, namely, pTiK306 and pTrK306, that are 262 kb and 581 kb, respectively.

scholarly journals Complete Genome Sequence of Buffalopox Virus

2018 ◽  
Vol 6 (21) ◽  
Author(s):  
Babak Afrough ◽  
Afia Zafar ◽  
Rumina Hasan ◽  
Roger Hewson
Keyword(s):  
Phylogenetic Analysis ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virus Isolate ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

ABSTRACT The first complete genome assembly of buffalopox virus isolate Karachi 2005, with a length of 195,630 bp, is presented here. Phylogenetic analysis shows the virus to cluster within Vaccinia species, and the genome contains 177 protein-coding sequences.

scholarly journals Complete Genome Sequence of Pseudomonas sp. Strain MM213, an Isolate from a Brookside in Bielefeld, Germany

2022 ◽  
Author(s):  
Bart Verwaaijen ◽  
Özgülen Cevahir ◽  
Fabian Hitz ◽  
Jacqueline Römmich ◽  
Donat Wulf
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
Pseudomonas Sp ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Pseudomonas Mandelii

Here, we report the complete genome sequence of Pseudomonas sp. strain MM213 of the Pseudomonas mandelii group, which was isolated from a brookside in Bielefeld, Germany. The genome size is 6,746,355 bp, with a GC content of 59.4% and 6,145 predicted protein-coding sequences.

scholarly journals Complete Genome Sequence of Broad-Host-Range Staphylococcus aureus Myophage ESa1

2020 ◽  
Vol 9 (30) ◽  
Author(s):  
Roshan D’Souza ◽  
Andrey A. Filippov ◽  
Kirill V. Sergueev ◽  
Yunxiu He ◽  
Amanda M. Ward ◽  
...  
Keyword(s):  
Staphylococcus Aureus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
Illumina Miseq ◽  
Broad Host Range ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

ABSTRACT A potentially therapeutic Twort-like myophage, Esa1, with specificity toward Staphylococcus aureus was isolated from lake water. We report the complete genome sequence of ESa1, assembled using both MinION and Illumina MiSeq reads, consisting of 153,106 bp, with 30.3% GC content, 253 protein coding sequences, 4 tRNAs, and 10,437-bp direct terminal repeats.

scholarly journals Complete Genome Sequence of Leuconostoc kimchii Strain NKJ218, Isolated from Homemade Kimchi

2019 ◽  
Vol 8 (27) ◽  
Author(s):  
Ji Young Jung ◽  
Jin-Woo Jeong ◽  
Seung-Young Lee ◽  
Hyun Mi Jin ◽  
Hee Won Choi ◽  
...  
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Whole Genome ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Pacbio Rs Ii ◽  
A Genome

ABSTRACT Leuconostoc kimchii strain NKJ218 was isolated from homemade kimchi in South Korea. The whole genome was sequenced using the PacBio RS II and Illumina NovoSeq 6000 platforms. Here, we report a genome sequence of strain NKJ218, which consists of a 1.9-Mbp chromosome and three plasmid contigs. A total of 2,005 coding sequences (CDS) were predicted, including 1,881 protein-coding sequences.

scholarly journals Complete Genome Sequence of Megamonas funiformis JCM 14723T

2020 ◽  
Vol 9 (16) ◽  
Author(s):  
Dieter M. Tourlousse ◽  
Mitsuo Sakamoto ◽  
Takamasa Miura ◽  
Koji Narita ◽  
Akiko Ohashi ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Trna Genes ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

We announce the complete genome sequence of Megamonas funiformis JCM 14723T (YIT 11815T). The genome consists of a circular chromosome (2,522,577 bp, 31.5% G+C content) and a plasmid of 46,189 bp (29.4% G+C content). The genome was predicted to contain 6 rRNA operons, 53 tRNA genes, and 2,440 protein-coding sequences.

scholarly journals Complete Genome Sequence of Blautia producta JCM 1471T

2020 ◽  
Vol 9 (17) ◽  
Author(s):  
Dieter M. Tourlousse ◽  
Mitsuo Sakamoto ◽  
Takamasa Miura ◽  
Koji Narita ◽  
Akiko Ohashi ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Rrna Genes ◽  
Trna Genes ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Single Circular Chromosome

We report a complete genome sequence of Blautia producta JCM 1471T. The genome consists of a single circular chromosome of 6,197,116 bp with a G+C content of 45.7%. The genome was annotated as containing 5 complete sets of rRNA genes, 70 tRNA genes, and 5,516 protein-coding sequences.

scholarly journals Sequence Analysis of a Jumbo Bacteriophage, Xoo-sp14, That Infects Xanthomonas oryzae pv. oryzae

2020 ◽  
Vol 9 (48) ◽  
Author(s):  
Amina Nazir ◽  
Zhaoxia Dong ◽  
Jin Liu ◽  
Xianglilan Zhang ◽  
Rana Adnan Tahir ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Xanthomonas Oryzae ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Dsdna Molecule ◽  
Double Stranded Dna

ABSTRACT A jumbo bacteriophage, Xoo-sp14, infecting Xanthomonas oryzae pv. oryzae was isolated from rice fields in China. Here, we report the complete genome sequence of this phage, revealing that it had a linear double-stranded DNA (dsDNA) molecule 232,104 bp long, with a G+C content of 58%. It has 251 annotated protein-coding sequences.

scholarly journals Complete Genome Sequence of Halomonas meridiana Strain Slthf1, Isolated from a Deep-Sea Thermal Vent

2020 ◽  
Vol 9 (16) ◽  
Author(s):  
Yuka Takahashi ◽  
Haruno Takahashi ◽  
Josephine Galipon ◽  
Kazuharu Arakawa
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Deep Sea ◽  
Complete Genome ◽  
Negative Bacterium ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Halomonas meridiana strain Slthf1 (ATCC BAA-801) is a Gram-negative bacterium that was isolated from a thermal vent in 1998. Here, we report the complete genome sequence of this strain, which has a 3.6-Mbp genome, containing 3,400 protein-coding sequences.

scholarly journals Complete Genome Sequence of Weissella cibaria Strain BM2, Isolated from Korean Kimchi

2020 ◽  
Vol 9 (34) ◽  
Author(s):  
Jang-In Shin ◽  
Sang Gi Oh ◽  
Man-Seok Bang ◽  
Hee-Won Jeong ◽  
Yea-Jin Lee ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Broad Spectrum ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Health Benefits ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Weissella Cibaria

ABSTRACT Weissella cibaria appears to have broad-spectrum health benefits. Here, we report the genome sequence of Weissella cibaria strain BM2, which was isolated from homemade kimchi; it consists of one circular chromosome of 2,462,443 bp and one plasmid of 11,067 bp. A total of 2,337 coding sequences were predicted, including 2,117 protein-coding sequences and a G+C content of 45.06%.

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