scholarly journals Draft Genome Sequence of Mycolicibacterium sp. Strain NCC-Tsukiji, Isolated from Blood Culture of a Patient with Malignant Lymphoma

2019 ◽  
Vol 8 (14) ◽  
Author(s):  
Hanako Fukano ◽  
Mitsunori Yoshida ◽  
Michi Shouji ◽  
Shunsuke Hatta ◽  
Dai Maruyama ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Blood Culture ◽  
Malignant Lymphoma ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Multilocus Sequence Analysis ◽  
Lymphoma Patient ◽  
Content Type

A nonidentifiable mycolicibacterium was isolated from a malignant lymphoma patient treated with intensive chemoimmunotherapy. Multilocus sequence analysis showed that this isolate was close to “Mycolicibacterium (Mycobacterium) ratisbonense,” but the details of this species were still unknown.

scholarly journals Draft Genome Sequence of Neisseria mucosa Strain HSUH001, Isolated from an Aggressive Periodontal Lesion

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Masatoshi Yamashita ◽  
Toshiyuki Nagasawa ◽  
Satsuki Kato ◽  
Hiroshi Miyakawa ◽  
Mari Fujita ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Multilocus Sequence Analysis ◽  
Content Type ◽  
Total Length ◽  
Neisseria Mucosa

ABSTRACT We report the draft genome sequence (143 contigs, with a total length of 2,424,805 bp and an N50 value of 36,066 bp) of a bacterium isolated from an aggressive periodontal lesion in a patient. We assigned strain HSUH001 to Neisseria mucosa through a multilocus sequence analysis.

scholarly journals Draft Genome Sequence of a Chryseobacterium indologenes Strain Isolated from a Blood Culture of a Hospitalized Child in Antananarivo, Madagascar

2019 ◽  
Vol 8 (35) ◽  
Author(s):  
Mamitina Alain Noah Rabenandrasana ◽  
Lala Fanomezantsoa Rafetrarivony ◽  
Lalainasoa Odile Rivoarilala ◽  
Vincent Enouf ◽  
Annick Lalaina Robinson ◽  
...  
Keyword(s):  
Antibiotic Resistance ◽  
Blood Culture ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Content Type ◽  
Chryseobacterium Indologenes

We report here the draft genome sequence of a Chryseobacterium indologenes strain, isolated from a blood culture of a 2.2-year-old child admitted to the hospital for vomiting and coughing. The genome was composed of 5,063,674 bp and had 37.04% GC content. We detected 4,796 genes with predicted protein-coding functions, including those associated with antibiotic resistance.

scholarly journals Draft Genome Sequence of Actinomyces massiliensis Strain 4401292T

2012 ◽  
Vol 194 (18) ◽  
pp. 5121-5121 ◽  
Author(s):  
Véronique Roux ◽  
Catherine Robert ◽  
Grégory Gimenez ◽  
Reem Gharbi ◽  
Didier Raoult
Keyword(s):  
Blood Culture ◽  
Genome Sequence ◽  
Anaerobic Bacterium ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Insertion Sequences ◽  
Content Type ◽  
Associated Proteins

ABSTRACTA draft genome sequence ofActinomyces massiliensis, an anaerobic bacterium isolated from a patient's blood culture, is described here. CRISPR-associated proteins, insertion sequences, and toxin-antitoxin loci were found on the genome.

scholarly journals Draft Genome Sequence of the Intimin-Positive Enteropathogenic Escherichia albertii Strain MBT-EA1, Isolated from Lettuce

2018 ◽  
Vol 6 (15) ◽  
pp. e00255-18
Author(s):  
Gregor Fiedler ◽  
Erik Brinks ◽  
Christina Böhnlein ◽  
Gyu-Sung Cho ◽  
Sabrina Koberg ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Protein Encoding ◽  
Encoding Genes

ABSTRACT The genome of the intimin (eae)-harboring Escherichia albertii strain MBT-EA1, isolated from lettuce in Germany, was sequenced. Sequence analysis showed the assembled draft genome size to be 4,560,948 bp, containing a predicted total of 4,414 protein-encoding genes, 11 rRNAs, and 82 tRNAs. Furthermore, three plasmid sequences were found.

scholarly journals Draft Genome Sequence of the Luminescent Strain Vibrio campbellii LB102, Isolated from a Black Tiger Shrimp (Penaeus monodon) Broodstock Rearing System

2017 ◽  
Vol 5 (20) ◽  
Author(s):  
Sujeet Kumar ◽  
Ashok Kumar Jangam ◽  
V. Akhil ◽  
Vidya Rajendran ◽  
Vinaya Kumar Katneni ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Yersinia Pestis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Penaeus Monodon ◽  
Draft Genome Sequence ◽  
Secretion Systems ◽  
Content Type ◽  
Black Tiger Shrimp ◽  
Vibrio Campbellii

ABSTRACT We report here the genome sequence of Vibrio campbellii LB102, isolated from the broodstock rearing system of a shrimp hatchery in India. Sequence analysis revealed the presence of effector toxins of the type III (YopT, sharing 39% identity with Yersinia pestis) and type VI (VgrG-3 and hemolysin coregulated protein of V. cholerae) secretion systems.

scholarly journals Draft Genome Sequence of the Naturally Competent Bacillus simplex Strain WY10

2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Eric C. Keen ◽  
Valery V. Bliskovsky ◽  
Sankar L. Adhya ◽  
Gautam Dantas
Keyword(s):  
Sequence Analysis ◽  
Soil Sample ◽  
Genome Sequence ◽  
Bacterial Isolate ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Dna Uptake ◽  
Content Type ◽  
Sample Sequence ◽  
Bacillus Simplex

ABSTRACT We sequenced a naturally competent bacterial isolate, WY10, cultured from a Wyoming soil sample. Sequence analysis revealed that WY10 is a novel strain of Bacillus simplex. To our knowledge, WY10 is the first B. simplex strain to be characterized as naturally competent for DNA uptake by transformation.

scholarly journals Draft Genome Sequence of Massilia sp. Strain ONC3, a Novel Bacterial Species of the Oxalobacteraceae Family Isolated from Garden Soil

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Vincent Peta ◽  
Rachel Raths ◽  
Heike Bücking
Keyword(s):  
Sequence Analysis ◽  
Genome Size ◽  
Genome Sequence ◽  
Bacterial Species ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Garden Soil ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

From garden soil, we isolated and sequenced Massilia sp. strain ONC3, a new member of the Oxalobacteraceae within the Massilia genus. Sequence analysis showed an assembled genome size of 5,622,601 bp, with a predicted total of 5,104 protein-coding sequences, 3,194 functionally assigned genes, 2 rRNA operons, and 56 tRNAs.

scholarly journals Draft Genome Sequence of a Metronidazole-Resistant Bacteroides fragilis Strain Isolated in Ecuador

2019 ◽  
Vol 8 (49) ◽  
Author(s):  
Jeannete Zurita ◽  
Gabriela Sevillano ◽  
Ariane Paz y Miño ◽  
Francisco Flores ◽  
Marcela Bovera
Keyword(s):  
Blood Culture ◽  
Genome Sequence ◽  
Draft Genome ◽  
Bacteroides Fragilis ◽  
Resistant Bacterium ◽  
Draft Genome Sequence ◽  
Medical Institution ◽  
Content Type ◽  
Metronidazole Resistance ◽  
New Variant

Here, we report the draft genome sequence of Bacteroides fragilis strain Z&Z143, a metronidazole-resistant bacterium isolated from a blood culture from an Ecuadorian patient hospitalized in a medical institution in Quito, Ecuador. We describe a new variant of the nim genes, which is associated with metronidazole resistance.

scholarly journals Draft Genome Sequence of the Mercury-Resistant Strain Acinetobacter baumannii I43

2018 ◽  
Vol 6 (15) ◽  
pp. e00283-18
Author(s):  
Kátia Aparecida de Siqueira ◽  
Ivani Souza Mello ◽  
William Pietro-Souza ◽  
Tiago Antônio de Oliveira Mendes ◽  
Marcos Antônio Soares
Keyword(s):  
Sequence Analysis ◽  
Acinetobacter Baumannii ◽  
Genome Sequence ◽  
Resistant Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
A Genome

ABSTRACT Here, we report the draft genome sequence of the Acinetobacter baumannii strain I43, which is highly resistant to mercury. The Illumina-based sequence analysis revealed a genome of approximately 4,520,353 bp composed of 4,091 coding sequences.

scholarly journals Draft Genome Sequence of Candida pseudohaemulonii Isolated from the Blood of a Neutropenic Patient

2018 ◽  
Vol 6 (14) ◽  
Author(s):  
Ratna Mohd Tap ◽  
Nur Amalina Kamarudin ◽  
Stephanie Jane Ginsapu ◽  
Ahmed Rafezzan Ahmed Bakri ◽  
Norazah Ahmad ◽  
...  
Keyword(s):  
Blood Culture ◽  
Amphotericin B ◽  
Genome Sequence ◽  
Neutropenic Patient ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type

ABSTRACT Candida pseudohaemulonii is phylogenetically close to the C. haemulonii complex and exhibits resistance to amphotericin B and azole agents. We report here the draft genome sequence of C. pseudohaemulonii UZ153_17 isolated from the blood culture of a neutropenic patient. The draft genome is 3,532,003,666 bp in length, with 579,838 reads, 130 contigs, and a G+C content of 47.15%.

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