Isolation and Characterization of Bacterial Species from Ain Mud Volcano, Iran

Microbiology ◽  
2018 ◽  
Vol 87 (2) ◽  
pp. 282-289
Author(s):  
E. Sepanian ◽  
A. A. Sepahy ◽  
F. Hosseini
Keyword(s):  
Bacterial Species ◽  
Mud Volcano ◽  
Isolation And Characterization

scholarly journals Isolation and characterization of bacteria residing in the oral, gut, and fecal samples of different pheasant species

2023 ◽  
Vol 83 ◽  
Author(s):  
M. Mushtaq ◽  
S. M. Bukhari ◽  
S. Ahmad ◽  
A. Khattak ◽  
M. B. Chattha ◽  
...  
Keyword(s):  
Bacterial Species ◽  
Gut Contents ◽  
Phasianus Colchicus ◽  
Gut Content ◽  
E Coli ◽  
Colony Forming Unit ◽  
Isolation And Characterization ◽  
Staphylococcus Spp ◽  
Campylobacter Spp

Abstract There is a paucity of research conducted on microbial prevalence in pheasants. The microbiota of captive birds has zoonotic significance and must be characterize. Present study is therefore planned to assess the microbiota from oral, fecal and gut content of captive avian species. It will be helpful in characterization of harmful microbes. Different samples taken from oral, gut and feces of ring-necked pheasants (Phasianus colchicus), green pheasants (Phasianus versicolor), golden pheasant (Chrysolophus pictus) and silver pheasant (Lophura nycthemera). Samples were collected, diluted, and inoculated onto different agar plates (MacConkey, SS agar, MSA and nutrient agar) for cultivation of bacterial species. Colonies of E.coli, Staphylococcus spp. Brachyspira spp. and Campylobacter spp were observed based on colony morphology. Colony forming unit showed E. coli as frequently found bacteria in fecal, oral and gut contents of all the above pheasants. The overall significance difference was found among bacterial species of golden pheasants, green pheasant, ring-necked pheasant, and silver pheasants. It was concluded that E.coli is predominant isolated from heathy pheasants followed by Campylobacter, Staphylococcus and Brachyspira.

Isolation and Characterization of Levoglucosan Metabolizing Bacteria

2021 ◽  
Author(s):  
Ajay S. Arya ◽  
Minh T. H. Hang ◽  
Mark A. Eiteman
Keyword(s):  
Recombinant Expression ◽  
Bacterial Species ◽  
Soluble Carbohydrate ◽  
Rrna Gene ◽  
Gene Products ◽  
16S Rrna Gene Sequences ◽  
E Coli ◽  
Isolation And Characterization ◽  
Charred Wood

Bacteria were isolated from wastewater and soil containing charred wood remnants based on their ability to use levoglucosan as a sole carbon source and on their levoglucosan dehydrogenase (LGDH) activity. On the basis of their 16S rRNA gene sequences, these bacteria represented diverse genera of Microbacterium, Paenibacillus , Shinella , and Klebsiella . Genomic sequencing of the isolates verified that two isolates represented novel species, Paenibacillus athensensis MEC069 T and Shinella sumterensis MEC087 T , while the remaining isolates were closely related to either Microbacterium lacusdiani or Klebsiella pneumoniae . The genetic sequence of LGDH, lgdA , was found in the genomes of these four isolates as well as Pseudarthrobacter phenanthrenivorans Sphe3. The identity of the P. phenanthrenivorans LGDH was experimentally verified following recombinant expression in E. coli . Comparison of the putative genes surrounding lgdA in the isolate genomes indicated that several other gene products facilitate the bacterial catabolism of levoglucosan, including a putative sugar isomerase and several transport proteins. Importance Levoglucosan is the most prevalent soluble carbohydrate remaining after high temperature pyrolysis of lignocellulosic biomass, but it is not fermented by typical production microbes such as Escherichia coli and Saccharomyces cerevisiae . A few fungi metabolize levoglucosan via the enzyme levoglucosan kinase, while several bacteria metabolize levoglucosan via levoglucosan dehydrogenase. This study describes the isolation and characterization of four bacterial species which degrade levoglucosan. Each isolate is shown to contain several genes within an operon involved in levoglucosan degradation, furthering our understanding of bacteria which metabolize levoglucosan.

scholarly journals Isolation and Characterization of a Genetically Tractable Photoautotrophic Fe(II)-Oxidizing Bacterium, Rhodopseudomonas palustris Strain TIE-1

2005 ◽  
Vol 71 (8) ◽  
pp. 4487-4496 ◽  
Author(s):  
Yongqin Jiao ◽  
Andreas Kappler ◽  
Laura R. Croal ◽  
Dianne K. Newman
Keyword(s):  
Bacterial Species ◽  
Rhodopseudomonas Palustris ◽  
Carbon Sources ◽  
Integral Membrane Protein ◽  
Transposition Frequency ◽  
Isolation And Characterization ◽  
Abc Transport ◽  
A Cell ◽  
Random Insertion

ABSTRACT We report the isolation and characterization of a phototrophic ferrous iron [Fe(II)]-oxidizing bacterium named TIE-1 that differs from other Fe(II)-oxidizing phototrophs in that it is genetically tractable. Under anaerobic conditions, TIE-1 grows photoautotrophically with Fe(II), H2, or thiosulfate as the electron donor and photoheterotrophically with a variety of organic carbon sources. TIE-1 also grows chemoheterotrophically in the dark. This isolate appears to be a new strain of the purple nonsulfur bacterial species Rhodopseudomonas palustris, based on physiological and phylogenetic analysis. Fe(II) oxidation is optimal at pH 6.5 to 6.9. The mineral products of Fe(II) oxidation are pH dependent: below pH 7.0 goethite (α-FeOOH) forms, and above pH 7.2 magnetite (Fe3O4) forms. TIE-1 forms colonies on agar plates and is sensitive to a variety of antibiotics. A hyperactive mariner transposon is capable of random insertion into the chromosome with a transposition frequency of ∼10−5. To identify components involved in phototrophic Fe(II) oxidation, mutants of TIE-1 were generated by transposon mutagenesis and screened for defects in Fe(II) oxidation in a cell suspension assay. Among approximately 12,000 mutants screened, 6 were identified that are specifically impaired in Fe(II) oxidation. Five of these mutants have independent disruptions in a gene that is predicted to encode an integral membrane protein that appears to be part of an ABC transport system; the sixth mutant has an insertion in a gene that is a homolog of CobS, an enzyme involved in cobalamin (vitamin B12) biosynthesis.

Microflore hétérotrophe impliquée dans le procédé simultané de biolixiviation des métaux et de digestion des boues d'épuration

2001 ◽  
Vol 28 (1) ◽  
pp. 158-174 ◽  
Author(s):  
M Gamache ◽  
J F Blais ◽  
R D Tyagi ◽  
N Meunier
Keyword(s):  
Sewage Sludge ◽  
Heterotrophic Bacteria ◽  
Bacterial Species ◽  
Microbial Populations ◽  
Primary Sludge ◽  
Sludge Digestion ◽  
Isolation And Characterization ◽  
Secondary Sludge ◽  
Blastoschizomyces Capitatus

Until now, some microbiological studies have made it possible to highlight the role and identification of certain chimiolithotroph microorganisms directly involved in the simultaneous sewage sludge digestion and metal leaching (SSDML process). Moreover, some other studies have established the performance of the SSDML process for the destruction of pathogens. However, until now no study has been carried out to define the equilibrium of the heterotrophic microbial populations during the sludge acidification occurring during the operation of the SSDML process. Hence, the SSDML process was studied in batch and continuous mode employing different types of sludges (Communauté Urbaine de Québec (CUQ)-East primary sludge, Beauceville secondary sludge, and mixture of primary and secondary Valcartier sludge). The equilibrium of heterotrophic microbial populations was investigated along with sludge acidification and solids degradation. The results obtained during the SSDML process on different sludges showed a decrease followed by the destruction of a majority of heterotrophic bacterial species found in fresh sludges. The isolation and characterization of different microbial species showed that only two types of microorganisms persisted: the yeast Blastoschizomyces capitatus and an unidentified fungus.Key words: sewage sludge, simultanous bioleaching and digestion, heterotrophic bacteria, Blastoschizomyces capitatus, fungi.

scholarly journals Isolation and Characterization of Xenobiotic Pesticide Degrading Bacterial Species in Flower Farms Around Lake Naivasha, Kenya

2018 ◽  
Vol 1 (1) ◽  
Keyword(s):  
Biochemical Characterization ◽  
Bacterial Species ◽  
Rhodococcus Erythropolis ◽  
Soil Samples ◽  
Lake Naivasha ◽  
Organophosphate Pesticide ◽  
Lower Growth ◽  
Isolation And Characterization ◽  
Cell Counts

Certain microorganisms especially bacteria and fungi are able to use xenobiotic organic compounds as their carbon and nitrogen source for metabolism. Flower farms around lake Naivasha basin uses several agrochemicals especially pesticides to control pests and improve flower production. The aim of this study was to isolate and characterize morphologically and biochemically the main bacterial species that are able to grow and tolerate the pesticide contaminated farm soils. Soil samples were collected from randomly selected five greenhouses from each five flower farms namely Crescent, Elsamere, Karuturi, Malewa and Sewage farms around Lake Naivasha basin. The collected samples were processed for bacterial isolation using the nutrient agar, mac’ Conkey agar, blood agar, Luria-Bertani and Minimum Salt Media nutrient media. The conventional methods of swabbing and streaking were used. Pure colonies of isolates organisms were identified and characterized using standard microbiological technique. Morphological, cultural and biochemical characterization of bacterial species isolated from the flower farm soil samples identified mainly Pseudomonas auriginosa, Escherichia coli, Rhodococcus erythropolis and Bacillus subtilis species. Bacterial growth in pesticide consortia was quantified by monitoring colony growth of the species in liquid culture over time. The viable cell counts were determined turbidimetrically at O.D696nm. All the isolated bacterial species were able to grow in flower farm soil contaminated with organochloride and organophosphate pesticide residues. B. subtilis recorded the highest growth at 1.77±0.07 O.D696nm in pesticide mixture consortia. There was lower growth in organochloride pesticide consortia as compared to organophosphate pesticide consortia.

Isolation and characterization of bacterial diversity from soils supplemented with electrical transformer fluids

2011 ◽  
Vol 1 (2) ◽  
pp. 107-113
Author(s):  
Nwinyi Obinna C ◽  
Alade Adetutu ◽  
Leo‐ Akpan Imaobong R ◽  
Oladele Bolaji.O
Keyword(s):  
Optical Density ◽  
Culture Medium ◽  
Agricultural Land ◽  
Agricultural Soils ◽  
Bacterial Species ◽  
Minimal Salt Medium ◽  
Isolation And Characterization ◽  
The Mean ◽  
Biomass Increase

Repetitive enrichment of soils samples from an agricultural land and newly marked dumpsite on electrical transformer fluid yielded six bacterial species that have the capacity to utilize electrical transformer fluids (askarel) as carbon and energy source. Bacterial species namely: Micrococcus, Arthrobacter, Pseudomonas putida, Pseudomonas spp, Norcadia and Corynebacterium were identified using morphological and biochemical characteristics. The abilities of these bacterial species to utilize the electrical transformer fluids as carbon source in minimal salt medium (MSM); sub cultured in concentrations of 5, 10, 15 and 20μL of electrical transformer fluids were investigated for twenty‐one days period. Physiological changes in terms of biomass increase were monitored by measuring the pH and optical density of the culture medium. From the results obtained, there was observed a general decrease in the pH and  increase in Optical density (O.D). The mean pH and O.D. readings ranged between (4.34‐6.13 and 0.073‐0.386) respectively. The decreased pH could justify for the acidic metabolites produced in the course of utilization of askarel as growth substrates. This study suggested that, the tropical ecosystems can provide exotic bacterial species that are capable of degrading or mineralizing polychlorinated biphenyls and their derivatives from dumpsites and agricultural soils.

Isolation and characterization of a novel violacein-like pigment producing psychrotrophic bacterial species Janthinobacterium svalbardensis sp. nov

2012 ◽  
Vol 103 (4) ◽  
pp. 763-769 ◽  
Author(s):  
Jerneja Ambrožič Avguštin ◽  
Darja Žgur Bertok ◽  
Rok Kostanjšek ◽  
Gorazd Avguštin
Keyword(s):  
Bacterial Species ◽  
Isolation And Characterization

scholarly journals Characterization of a Diffusible Signaling Factor from Xylella fastidiosa

mBio ◽  
2013 ◽  
Vol 4 (1) ◽  
Author(s):  
Ellen D. Beaulieu ◽  
Michael Ionescu ◽  
Subhadeep Chatterjee ◽  
Kenji Yokota ◽  
Dirk Trauner ◽  
...  
Keyword(s):  
Cell Signaling ◽  
Unsaturated Fatty Acids ◽  
Xylella Fastidiosa ◽  
Bacterial Species ◽  
Content Type ◽  
Isolation And Characterization ◽  
High Level ◽  
Diffusible Signaling Factor ◽  
Cell Cell

ABSTRACTCell-cell signaling inXylella fastidiosahas been implicated in the coordination of traits enabling colonization in plant hosts as well as insect vectors. This cell density-dependent signaling has been attributed to a diffusible signaling factor (DSF) produced by the DSF synthase RpfF. DSF produced by related bacterial species are unsaturated fatty acids, but that ofX. fastidiosawas thought to be different from those of other taxa. We describe here the isolation and characterization of anX. fastidiosaDSF (XfDSF) as 2(Z)-tetradecenoic acid. This compound was isolated both from recombinantErwinia herbicolaexpressingX. fastidiosa rpfFand from anX. fastidiosa rpfCdeletion mutant that overproduces DSF. Since anrpfFmutant is impaired in biofilm formation and underexpresses the hemagglutinin-like protein-encoding geneshxfAandhxfB, we demonstrate that these traits can be restored by ca. 0.5 µMXfDSF but not by myristic acid, the fully saturated tetradecenoic acid. AphoA-basedX. fastidiosabiosensor that assesses DSF-dependent expression ofhxfAorhxfBrevealed a high level of molecular specificity of DSF signaling.IMPORTANCEX. fastidiosacauses diseases in many important plants, including grape, where it incites Pierce’s disease. Virulence ofX. fastidiosafor grape is coordinated by cell-cell signaling molecules, designated DSF (Diffusible Signaling Factor). Mutants blocked in DSF production are hypervirulent for grape, suggesting that virulence is suppressed upon DSF accumulation and that disease could be controlled by artificial elevation of the DSF level in plants. In this work, we describe the isolation of the DSF produced byX. fastidiosaand the verification of its biological activity as an antivirulence factor. We also have developedX. fastidiosaDSF biosensors to evaluate the specificity of cell-cell signaling to be investigated.

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