Isolation and characterization of bacteria residing in the oral, gut, and fecal samples of different pheasant species

There is a paucity of research conducted on microbial prevalence in pheasants. The microbiota of captive birds has zoonotic significance and must be characterize. Present study is therefore planned to assess the microbiota from oral, fecal and gut content of captive avian species. It will be helpful in characterization of harmful microbes. Different samples taken from oral, gut and feces of ring-necked pheasants (Phasianus colchicus), green pheasants (Phasianus versicolor), golden pheasant (Chrysolophus pictus) and silver pheasant (Lophura nycthemera). Samples were collected, diluted, and inoculated onto different agar plates (MacConkey, SS agar, MSA and nutrient agar) for cultivation of bacterial species. Colonies of E.coli, Staphylococcus spp. Brachyspira spp. and Campylobacter spp were observed based on colony morphology. Colony forming unit showed E. coli as frequently found bacteria in fecal, oral and gut contents of all the above pheasants. The overall significance difference was found among bacterial species of golden pheasants, green pheasant, ring-necked pheasant, and silver pheasants. It was concluded that E.coli is predominant isolated from heathy pheasants followed by Campylobacter, Staphylococcus and Brachyspira.

Metabarcoding analysis of trophic sources and linkages in the plankton community of the Kuroshio and neighboring waters

Trophic sources and pathways supporting early life stages are crucial for survival of forage fishes recruiting around the oligotrophic and unproductive Kuroshio. However, information is limited for the Kuroshio planktonic food web and its trophodynamics because of its high biodiversity. Here, we explore trophic sources and linkages in the Kuroshio plankton community using metabarcoding analysis of gut-content DNA for 22 mesozooplankton groups. The major prey was dinoflagellates and calanoids for omnivorous groups, and calanoids and gelatinous organisms for carnivorous groups. Larvaceans and hydrozoans were the most frequently appeared prey for both omnivores and carnivores, whereas they were minor constituents of the available prey in water samples. Although calanoids overlapped as major prey items for both omnivores and carnivores because they were the most available, contributions from phytoplankton and gelatinous prey differed among taxonomic groups. Further analysis of the metabarcoding data showed that in addition to omnivorous copepods like calanoids, gelatinous groups like larvaceans and hydrozoans were important hubs in the planktonic food web with their multiple trophic linkages to many components. These findings suggest that gelatinous organisms are important as supplementary prey and provide evidence of niche segregation on trophic sources among mesozooplankton groups in the Kuroshio.

Gut Content Analysis of Labeo Calbasu at Different Seasons in Dekhar Haor, Sunamgonj, Bangladesh

This research was conducted to find out the seasonal (monsoon and post monsoon) variation in gut contents of Labeo calbasu from June to November, 2016 in Dekhar haor of Sunamgonj district, Bangladesh. Three orders of phytoplankton were identified from the gut content viz. Bacillariophyceae (11 genera), Chlorophyceae (9 genera), and Cyanophyceae (4 genera). Bacillariophyceae (6.98±1.61×103cell/L) were identified as the most dominant phytoplankton group. Two types of zooplankton viz. crustacean (5 genera) and rotifer (5 genera) were identified. Crustaceans (0.88±0.4×103cell/L) were identified as the dominant group among zooplankton. Feeding intensity (average index of fullness, Gastrosomatic index) was higher in the post monsoon season compared with the monsoon season. The findings concluded that L. calbasu prefers phytoplankton over zooplankton, and the plankton consumption was slightly higher in the post-monsoon season than in the monsoon season. This research is expected to be crucial in the management and conservation of endangered L. calbasu in open waters, as well as provide baseline work for future research and open the path for captive aquaculture.

Galactooligosaccharides and Xylo-oligosaccharides Altering the Caecal Microbiome, Metabolome, and Transcriptome of Chickens Revealed by a Multi-Omics Analysis

Backgroud Studies have shown that prebiotics could affect meat quality, but the underlying mechanism are poorly understood. This study aimed to investigate whether prebiotics affect chicken’s meat quality through gut microbiome and metabolome. Methods The gut content were collected from chickens fed with or without prebiotics (galactooligosaccharides or xylo-oligosaccharides) and subjected to microbiome and metabolome analyses, and chicken breast was performed transcriptome sequencing. Results The prebiotics altered proportions of microbiota in gut contents at different levels, especially microbiota in the phylum of Bacteroidetes and Firmicutes, such as genus of Alistipes, Bacteroides, and Faecalibacterium. The prebiotics also altered contents of caecal metabolites such as lysophosphatidylcholine (lysoPC), intramuscular fat and flavor compound (Benzaldehyde and myristic acid). Differentially expressed genes (DEGs) induced by prebiotics were significantly involved in regulation of lipolysis inadipocytes and adipocytokine signaling pathway. Changes in gut microbiota and metabolites were remarkably correlated such as Bacteroidetes and Firmicutes was respectively positively and negatively correlated with lysoPC. DEGs were also interacted with caecal metabolites. Conclusion These findings integrated and incorporated link among gut microbiota, metabolites and transcriptome, which proposed prebiotics may affect meat quality and flavor of chickens.

Gut content analysis of cattle egrets (Bubulcus ibis) in Asam Kumbang Crocodile Park, North Sumatra

Cattle egret (Bubulcus ibis) is a widespread avian species inhabiting a variety of natural and artificial sites. Asam Kumbang Crocodile Park is one of establishments that occupied some portions of B. ibis habitat with no recent information on the food resource and prey availability for the viability of B. ibis. To this aim, we collected 10 random individuals of B. ibis to be sacrificed for gut content analysis of prey species. A total of 19 taxa was found as prey items in the gut of B. ibis with the dominant group from insects (Orthoptera, Scolopendromorpha). The diversity of prey species was categorized as moderate with intraspecific diet variation which formed four guilds that fed on specific taxa namely Group 1 (Haplotaxida, Lepidoptera, Anurans), Group 2 (Blattodea, Coleoptera, Araneae), Group 3 (Orthoptera, Scolopendromorpha); and Group 4 (Dermaptera, Squamata). Oxya chinensis and Oxya velox are important rice grasshopper pests that were also found in the gut of B. ibis reflecting their potential function as biological control agent.

Earthworm Depuration: Analysis of Coprophagy and Light Impacts

Earthworms are used as biomarkers to determine the bioavailability of contaminants. As such, their uptake of contaminants has been studied extensively. Protocols have been established to ensure that laboratory-obtained data are valid and comparable. However, the method of removing the organism’s gut content (depuration) before assessing the contaminant in the tissue is not standardized. The aim of this research project is to investigate some parameters for earthworm depuration: light conditions and coprophagy prevention. Eisenia fetida were depurated for 48 hours in two separate studies according to guidelines ASTM-E1676 and OECD Test No. 317. In one study, 2 frequencies of egesta removal were employed during depuration to prevent coprophagy and compared to the control (egesta and worms removed after 48 hours). In another study, the subjects and material egested were assessed under conditions of continuous darkness and the control (continuous light). The depuration methods that included egesta removal every 12 and 24 hours resulted in 62% and 10% more egested material per mg of earthworm than the control (filter paper disc change after 48 hours), respectively. The earthworms depurated in continuous darkness egested 94% more material per mg of earthworm than the control. The results indicate that depuration would be more total under continuous darkness and employing a coprophagy prevention method. These findings could lead to more efficient depuration methods.

A Multi Omics Approach Unravels Metagenomic and Metabolic Alterations of a Probiotic and Synbiotic Additive in Rainbow Trout (Oncorhynchus Mykiss)

BackgroundAnimal protein production is increasingly looking towards microbiome associated services such as the design of new and better probiotic solutions to further improve gut health and production sustainability. Here, we investigate the functional effects of bacteria based pro- and synbiotic feed additives on microbiome associated functions in relation to growth performance in the commercially important rainbow trout (Oncorhynchus mykiss). We combine complementary insights from multiple omics datasets from gut content samples, including 16S bacterial profiling, whole metagenomes, and untargeted metabolomics, to investigate bacterial metagenomic assembled genomes (MAGs) and their molecular interactions with host metabolism.ResultsOur findings reveal, that (I) feed additives changed the microbiome and that rainbow trout reared with feed additives had a significantly reduced relative abundance of the salmonid related Candidatus Mycoplasma salmoninae in both the mid and distal gut content, (II) genome resolved metagenomics revealed that alterations of microbial arginine biosynthesis and terpenoid backbone synthesis pathways were directly associated with presence of Candidatus Mycoplasma salmoninae, (III) differences in the composition of intestinal microbiota among feed types were directly associated with significant changes of the metabolomic landscape, including lipids and lipid-like metabolites, amino acids, bile acids, and steroid-related metabolites.ConclusionOur results demonstrate how use of multi-omics to investigate complex host-microbiome interactions enable us to better evaluate the functional potential of probiotics compared to studies that only measure overall growth performance or that only characterise the microbial composition in intestinal environments.