scholarly journals Structure-Preserving Numerical Integrators for Hodgkin--Huxley-Type Systems

2020 ◽  
Vol 42 (1) ◽  
pp. B273-B298
Author(s):  
Zhengdao Chen ◽  
Baranidharan Raman ◽  
Ari Stern
Author(s):  
Xiaocheng Shang ◽  
Hans Christian Öttinger

We study the optimal design of numerical integrators for dissipative systems, for which there exists an underlying thermodynamic structure known as GENERIC (general equation for the nonequilibrium reversible–irreversible coupling). We present a frame-work to construct structure-preserving integrators by splitting the system into reversible and irreversible dynamics. The reversible part, which is often degenerate and reduces to a Hamiltonian form on its symplectic leaves, is solved by using a symplectic method (e.g. Verlet) with degenerate variables being left unchanged, for which an associated modified Hamiltonian (and subsequently a modified energy) in the form of a series expansion can be obtained by using backward error analysis. The modified energy is then used to construct a modified friction matrix associated with the irreversible part in such a way that a modified degeneracy condition is satisfied. The modified irreversible dynamics can be further solved by an explicit midpoint method if not exactly solvable. Our findings are verified by various numerical experiments, demonstrating the superiority of structure-preserving integrators over alternative schemes in terms of not only the accuracy control of both energy conservation and entropy production but also the preservation of the conformal symplectic structure in the case of linearly damped systems.


1997 ◽  
Vol 35 (7) ◽  
pp. 187-195 ◽  
Author(s):  
Binle Lin ◽  
K. Futono ◽  
A. Yokoi ◽  
M. Hosomi ◽  
A. Murakami

Establishing economic treatment technology for safe disposal of photo-processing waste (PW) has most recently become an urgent environmental concern. This paper describes a new biological treatment process for PW using sulfur-oxidizing bacteria (SOB) in conjunction with activated carbon (AC). Batch-type acclimation and adsorption experiments using SOB/PAC, SOB/PNAC, and SOB reactor type systems demonstrated that AC effectively adsorbs the toxic/refractory compounds which inhibit thiosulfate oxidization of SOB in PW. Thus, to further clarify the effect of AC, we performed a long-term (≈ 160 d) continuous-treatment experiment on 4- to 8-times dilution of PW using a SOB/GAC system which simulated a typical wastewater treatment system based on an aerobic activated sludge process that primarily uses acclimated SOB. The thiosulfate load and hydraulic retention time (HRT) were fixed during treatment such that they ranged from 0.8-3.7 kg S2O32-/l/d and 7.7-1.9 d, respectively. As expected, continuous treatment led to breakthrough of the adsorption effect of GAC. Renewing the GAC and continuing treatment for about 10 d demonstrated good treatment effectiveness.


Author(s):  
V. M. Es'kov ◽  
◽  
V. V. Grigorenko ◽  
N. B. Nazina ◽  
◽  
...  
Keyword(s):  

2003 ◽  
Vol 38 (1) ◽  
pp. 250-261 ◽  
Author(s):  
Gilles Barthe ◽  
Horatiu Cirstea ◽  
Claude Kirchner ◽  
Luigi Liquori
Keyword(s):  

2021 ◽  
Vol 252 (4) ◽  
pp. 453-462
Author(s):  
Sergiy Mykolayovych Bak ◽  
Galyna Mykolayivna Kovtonyuk
Keyword(s):  

2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Ning Wang ◽  
Menglu Li ◽  
Haiyan Xiao ◽  
Zhibin Gao ◽  
Zijiang Liu ◽  
...  

AbstractBand degeneracy is effective in optimizing the power factors of thermoelectric (TE) materials by enhancing the Seebeck coefficients. In this study, we demonstrate this effect in model systems of layered oxyselenide family by the density functional theory (DFT) combined with semi-classical Boltzmann transport theory. TE transport performance of layered LaCuOSe and BiCuOSe are fully compared. The results show that due to the larger electrical conductivities caused by longer electron relaxation times, the n-type systems show better TE performance than p-type systems for both LaCuOSe and BiCuOSe. Besides, the conduction band degeneracy of LaCuOSe leads to a larger Seebeck coefficient and a higher optimal carrier concentration than n-type BiCuOSe, and thus a higher power factor. The optimal figure of merit (ZT) value of 1.46 for n-type LaCuOSe is 22% larger than that of 1.2 for n-type BiCuOSe. This study highlights the potential of wide band gap material LaCuOSe for highly efficient TE applications, and demonstrates that inducing band degeneracy by cations substitution is an effective way to enhance the TE performance of layered oxyselenides.


2021 ◽  
Vol 43 (1) ◽  
pp. 1-79
Author(s):  
Colin S. Gordon

Effect systems are lightweight extensions to type systems that can verify a wide range of important properties with modest developer burden. But our general understanding of effect systems is limited primarily to systems where the order of effects is irrelevant. Understanding such systems in terms of a semilattice of effects grounds understanding of the essential issues and provides guidance when designing new effect systems. By contrast, sequential effect systems—where the order of effects is important—lack an established algebraic structure on effects. We present an abstract polymorphic effect system parameterized by an effect quantale—an algebraic structure with well-defined properties that can model the effects of a range of existing sequential effect systems. We define effect quantales, derive useful properties, and show how they cleanly model a variety of known sequential effect systems. We show that for most effect quantales, there is an induced notion of iterating a sequential effect; that for systems we consider the derived iteration agrees with the manually designed iteration operators in prior work; and that this induced notion of iteration is as precise as possible when defined. We also position effect quantales with respect to work on categorical semantics for sequential effect systems, clarifying the distinctions between these systems and our own in the course of giving a thorough survey of these frameworks. Our derived iteration construct should generalize to these semantic structures, addressing limitations of that work. Finally, we consider the relationship between sequential effects and Kleene Algebras, where the latter may be used as instances of the former.


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