Transition state dynamics and a QM/MM model for the Cl– + C2H5Cl SN2 reaction

2004 ◽  
Vol 82 (6) ◽  
pp. 891-899 ◽  
Author(s):  
Lipeng Sun ◽  
Eunkyung Chang ◽  
Kihyung Song ◽  
William L Hase

A MP2/6-31G* direct dynamics simulation is used to study the dynamics of the central barrier [Cl-C2H5-Cl]– for the Cl– + C2H5 SN2 reaction. The majority of the trajectories move off the central barrier to form the Cl––C2H5Cl complex and appear to undergo efficient IVR as assumed by RRKM theory. However, some of the trajectories move directly to products without forming the complex, a non-RRKM result. A hydrogen atom link-atom QM/MM model is described for studying the dynamics of [X-CH2R-Y]– central barriers with the -R substituent. The model is used to calculate vibrational frequencies for the [Cl-C2H5-Cl]– central barrier.Key words: SN2 reaction dynamics, RRKM theory, QM/MM model, central barrier dynamics, direct dynamics classical trajectories.


2006 ◽  
Vol 05 (01) ◽  
pp. 51-57 ◽  
Author(s):  
YAN QI ◽  
XIAO-FANG CHEN ◽  
KE-LI HAN

Direct dynamics within the framework of DFT has been used to study the reaction between Boron trichloride and H radical. Two sets of trajectories amounting to a total of 40 were simulated for different collision sites and initial velocities. Two reactive channels have been found. One is a Cl atom abstraction channel and the other is a Cl atom elimination channel. The detailed mechanisms of both reactive channels were depicted by sampling trajectories. For the first channel, the reaction mechanism proposed by ab initio calculations was represented. For the second channel, transition state was mapped out after the dynamics simulation.



Author(s):  
Subhasish Mallick ◽  
Pradeep Kumar

The present study investigates the mode specificity in microsolvated OH • (H 2 O) + HCl re- action using on-the-fly direct dynamics simulation. To the best of our knowledge, this...



2018 ◽  
Vol 20 (16) ◽  
pp. 10895-10905
Author(s):  
Prajakta Rajaram Parab ◽  
K. Alexander Heufer ◽  
Ravi Xavier Fernandes

The formation of the transition state for the H-abstraction reaction from isopentanol by the HO2˙ radical.



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