Crystal chemistry of tetraradial species. Part 8. Mix and match: cation geometry, ion packing, hydrogen bonding, and π–π interactions in cis-2,2′-bipyridinium(1+) and 1,10-phenanthrolinium(1+) tetraphenylborates — and what about proton sponges?

1996 ◽  
Vol 74 (2) ◽  
pp. 201-220 ◽  
Author(s):  
Pradip K. Bakshi ◽  
T. Stanley Cameron ◽  
Osvald Knop

The crystal structures at −20 °C of cis-2,2′-bipyridinium(1+) (BPTB, P21/n, a = 9.249(3), b = 14.093(7), c = 20.285(3) Å, β = 92.86(2)°, Z = 4) and 1,10-phenanthrolinium(1+) (PTB, P21/c, a = 11.194(2), b = 13.837(3), c = 18.303(3) Å, β = 107.82(1)°, Z = 4) tetraphenylborates have been determined. Inasmuch as 1,10-phenanthroline is an aromatically bridged cis-2,2′-bipyridine, monoprotonation results, in both systems, in the formation of an intra-cation N—H … N′ hydrogen bond, the geometric and spectroscopic properties of which we have investigated. The cation skeleton in PTB is planar to 0.03(2) Å; in BPTB the dihedral angle between the two cation ring planes is 5.2°. In the pale yellow PTB there are significant π–π stacking interactions that persist into solution. The effect of protonation on the geometry of the 2,2′-bipyridine and 1,10-phenanthroline systems is examined in considerable detail and compared with the corresponding effects in the paraquat(2+) and similar cations. On both geometric and spectroscopic (infrared spectra between 10 and 295 K) evidence, the N—H … N′ hydrogen-bonding interaction is stronger in BPTB; in PTB this interaction is among the weakest reported in crystals, the ν(NH) stretching frequency at 10 K being as high as 3279 cm−1. A detailed comparison of the geometries of the intra-cation N—H … N′ bonds in BPTB and PTB with those in classical and modified proton-sponge cations has led to the formulation of criteria useful in predicting the occurrence of proton-sponge-like properties. Key words: bipyridinium ions, hydrogen bonding, phenanthrolinium ions, proton sponges, tetraphenylborates.

1998 ◽  
Vol 76 (5) ◽  
pp. 583-611 ◽  
Author(s):  
Katherine N Robertson ◽  
Pradip K Bakshi ◽  
Susanne D Lantos ◽  
T Stanley Cameron ◽  
Osvald Knop

In organoammonium cations containing two or more N atoms, the H(N) atom introduced by the protonation may engage in an N→H(N)...Y bond to an external acceptor (anion or solvent molecule); in an intra-cation (intra-annular) N→H(N)...N' bond; or in a branched N→H(N)...N',Y bond(s), simultaneously intra-cation and to one or more external acceptors. The outcome of the competition for these bond types is determined by various factors, e.g., the size of the ring to be closed by insertion of the H(N) atom, steric accessibility of H(N), and the H-bond-forming strength of Y. Some of these are discussed in considerable detail and are exemplified by the hitherto unreported crystal structures of the tetraphenylborates (solvated or unsolvated) of the 2,2':6',2"-terpyridinium (1), 2,3-bis(2-pyridyl)pyrazinium (2), 2,2'-dipyridylammonium (3), 6,7-dihydro[b,j][1,10]phenanthrolinium (9), 2,4,7-triamino-6-pteridinium (triamterenium, 10), proton-sponge (1-Me2N-8-Me2NH-naphthalene, 11, 12), and 9-amino-1,2,3,4-tetrahydroacridinium (tacrinium, 13) cations. The crystal structures of the comparison compounds 2,3-bis(2-pyridyl)pyrazine (4) and its mono- (2A) and diprotonated (3) chlorides, and of 2-phenylpyridinium (6) and 7,8-benzoquinolinium (7, 8) tetraphenylborates, have also been determined. The many interesting features of these crystal structures, such as the X→H(X)...phenyl bonding (X = N, O, C), are commented upon and crystallographic comparisons with numerous literature compounds are offered. Included in the discussion are the monoprotonated intrabridgehead cations of the bicyclic diamines of Alder et al., the N-H(N)-N' angle of which has been shown, analytically, to be dominated by the size of the smallest of the rings in these tricyclic systems.Key words: crystal structures, hydrogen bonding, intrabridgehead cations, proton sponges, tetraphenylborates.


2018 ◽  
Vol 71 (11) ◽  
pp. 890
Author(s):  
Wenguang Wei ◽  
Yao Jin ◽  
Tao Han ◽  
Bin Du ◽  
Xiujuan Zhi ◽  
...  

A C3-symmetrical 4,4″,4⁗-nitrilotris(2′-methyl-[1,1′-biphenyl]-3-carboxylic acid) (4) derived from nitrilotriacetic acid (NTA) was found to selectively bind Zinc(ii) ions both in DMSO or MeOH. A synergistic effect of the anionic counter ion SO42− on the sensing behaviour of 4 to metal ions was clearly observed in DMSO. Interestingly, 4 showed a rapid hypochromatic shift in emission ascribed to the deprotonation and the concomitant formation of a 4–metal complex upon the addition of Zn2+ ions, instead of the bathochromic shift and emission enhancement attributed to the SO42−-involved hydrogen-bonding interaction for Ni2+, Li+, Mg2+, and Na+ ions at ratios below 1:1 in DMSO. The observed sensing process of sulfate salts associated with the SO42−-involved hydrogen-bonding interaction, deprotonation, and the concomitant complexation can also be clearly monitored by titration methods utilising UV-vis, fluorescence, and NMR spectroscopy in solution. In comparison with 4, compound 1 showed an obvious difference in the binding interaction with zinc sulfate in MeOH, probably owing to the decreased acidity. Anion-induced hydrogen-bonding interactions and deprotonation of the COOH protons in the excited state also endowed 4 versatile spectroscopic properties. The addition of F− and SO42− anions resulted in a remarkable enhancement probably related with a rigidifying effect. 2,2′,2″-Nitrilotribenzoic acid can be utilised as a potential scaffold to build a series of conjugated fluorescent sensors by its chelation effect owing to the rigid cavity pre-organised by the triphenylamine moiety and the carboxylic groups and the conjugation extension in the 4,4′,4″ positions.


IUCrData ◽  
2021 ◽  
Vol 6 (8) ◽  
Author(s):  
Elliott B. Newman ◽  
Andrei V. Astashkin ◽  
Daniel R. Albert ◽  
Edward Rajaseelan

A new triazole-based N-heterocyclic carbene iridium(I) cationic complex with a tetrafluoridoborate counter-anion, [Ir(C10H11N3)(C8H12)(C18H15P)]BF4, has been synthesized and structurally characterized. The cationic complex exhibits a distorted square-planar environment around the IrI ion. One significant non-standard hydrogen-bonding interaction exists between a hydrogen atom on the N-heterocyclic carbene ligand and a fluorine atom from the counter-ion, BF4 −. In the crystal, π–π stacking interactions are observed between one of the phenyl rings and the triazole ring. Both intermolecular and intramolecular C—H...π(ring) interactions are also observed.


2020 ◽  
Author(s):  
Hossein Khalilian ◽  
Gino A. DiLabio

Here, we report an exquisite strategy that the B12 enzymes exploit to manipulate the reactivity of their radical intermediate (Adenosyl radical). Based on the quantum-mechanic calculations, these enzymes utilize a little known long-ranged through space quantum Coulombic effect (QCE). The QCE causes the radical to acquire an electronic structure that contradicts the Aufbau Principle: The singly-occupied molecular orbital (SOMO) is no longer the highest-occupied molecular orbital (HOMO) and the radical is unable to react with neighbouring substrates. The dynamic nature of the enzyme and its structure is expected to be such that the reactivity of the radical is not restored until it is moved into close proximity of the target substrate. We found that the hydrogen bonding interaction between the nearby conserved glutamate residue and the ribose ring of Adenosyl radical plays a crucial role in manipulating the orbital ordering


2020 ◽  
Author(s):  
Hossein Khalilian ◽  
Gino A. DiLabio

Here, we report an exquisite strategy that the B12 enzymes exploit to manipulate the reactivity of their radical intermediate (Adenosyl radical). Based on the quantum-mechanic calculations, these enzymes utilize a little known long-ranged through space quantum Coulombic effect (QCE). The QCE causes the radical to acquire an electronic structure that contradicts the Aufbau Principle: The singly-occupied molecular orbital (SOMO) is no longer the highest-occupied molecular orbital (HOMO) and the radical is unable to react with neighbouring substrates. The dynamic nature of the enzyme and its structure is expected to be such that the reactivity of the radical is not restored until it is moved into close proximity of the target substrate. We found that the hydrogen bonding interaction between the nearby conserved glutamate residue and the ribose ring of Adenosyl radical plays a crucial role in manipulating the orbital ordering


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