ROTATIONAL BARRIERS AND VIBRATIONAL SPECTRA OF PHENYL KETENE, AZIDE, AND ISOCYANATE

2010 ◽  
Vol 09 (02) ◽  
pp. 511-529 ◽  
Author(s):  
WOLFGANG FÖRNER ◽  
HASSAN M. BADAWI

Our interest in conjugation effects in substituted phenyl compounds has turned our attention to the highly reactive compounds phenyl ketene, azide, and isocyanate, which due to their reactivity are of utmost importance in organic synthesis. We performed local density functional theory (DFT) calculations using a 6-311G** basis set to calculate the structures and potential functions of the internal rotation. Further for the minimum structures we computed the vibrational infrared and Raman spectra of the three molecules. In order to confirm that DFT works rather well in these systems we performed the geometry optimizations also using ab initio Moeller–Plesset perturbation theory of second order (MP2) in the same basis set. As expected there exist just two minimum structures for each of the molecules which both correspond to planar structures and are identical due to the symmetry of the phenyl ring. The transitions states (TS) of the internal rotations are the perpendicular ones. We expect conjugation to play no major role in these molecules since extensive conjugation effects would imply a large reduction of the aromatic character of the phenyl ring which in turn would greatly destabilize the systems. However, although the rotational barriers appear to be rather small in these systems conjugation must play at least some role in stabilizing the planar ground state. As detailed later, the relative heights of the rotational barriers can all be explained naturally. Experimental vibrational spectra could be obtained only for phenyl isocyanate and azide, but not for the ketene because of the high reactivity of this molecule. Since in the former cases the calculated spectra agree fairly well with the measured ones, we present those of the other molecule as theoretical prediction, which could be useful to detect spectroscopically in a reaction mixture residual reactant. On the basis of potential energy distribution (PED) calculations we present a complete assignment of the vibrational lines to symmetry coordinates, where, for example, ring breathing must show up with rather large intensities in the Raman spectra of the molecules.

2019 ◽  
Vol 18 (02) ◽  
pp. 1950009 ◽  
Author(s):  
Yunusa Umar ◽  
Nedal Abu-Thabit ◽  
Paul Jerabek ◽  
Ponnadurai Ramasami

The FTIR spectrum of acetanilide (ACN) is recorded and analyzed. The optimized molecular structures, harmonic vibrational wavenumbers and corresponding vibrational assignments of the ACN are computationally examined by using the B3LYP density functional theory method together with the standard 6-311[Formula: see text]G([Formula: see text],[Formula: see text]) basis set. From the calculations, the ACN is predicted to exist predominantly in trans configuration with the relative energy, rotational barrier, and population of 2.8[Formula: see text]kcal/mol, 14.8[Formula: see text]kcal/mol, and 99.5%, respectively. The optimized structure shows that the amide group (CO–NH) of trans-ACN adopts a planar peptide-like conformation. The effect of the incorporation of dispersion correction to the B3LYP on the calculated equilibrium structure and vibrational spectra of ACN is investigated. The highest occupied and the lowest unoccupied molecular orbitals, IR intensities and molecular electrostatic potential results are reported. In addition, reliable vibrational assignments have been made on the basis of Potential Energy Distribution (PED) using VEDA4 program. Simulated IR spectrum are compared with the experimental FTIR and FT-Raman spectra. Energy decomposition analysis (EDA) revealed that Pauli repulsion is responsible for the increased stability of the trans over the cis isomer.


2017 ◽  
Vol 15 (1) ◽  
pp. 225-237 ◽  
Author(s):  
Maha S. Almutairi ◽  
S. Muthu ◽  
Johanan C. Prasana ◽  
B. Chandralekha ◽  
Alwah R. Al-Ghamdi ◽  
...  

AbstractFourier transform infrared (FT-IR) and FT-Raman spectra of 1-acetyl-1H-indole-2,3-dione (N-acetylisatin) were recorded in the solid phase and analyzed. The molecular geometry, vibrational frequencies, infrared intensities, Raman activities and atomic charges were calculated using density functional theory (DFT/B3LYP) calculations with a standard 6-311++G(d,p) basis set. The fundamental vibrational modes of N-acetylisatin were analyzed and fully assigned with the aid of the recorded FT-IR and FT-Raman spectra. The simulated FT-IR and FT-Raman spectra showed good agreement with the experimental spectra. The stability of the molecule, arising from hyper-conjugative interactions and charge delocalization, was analyzed using natural bond orbital (NBO) analysis. The dipole moment (µ), polarization (α) and hyperpolarization (β) values of N-acetylisatin were also computed. The potential energy distribution (PED) was computed for the assignment of unambiguous vibrational fundamental modes. The HOMO and LUMO energy gap illustrated the chemical activity of N-acetylisatin. The energy and oscillator strength were calculated by DFT. Gauge–including atomic orbital NMR (1H and 13C) chemical shift calculations were performed and compared with the experimental values. Thermodynamic properties (heat capacity, entropy and enthalpy) of the compound at different temperatures were also calculated.


2015 ◽  
Vol 8 (3) ◽  
pp. 2197-2221
Author(s):  
Theraviyum Chithambarathanu ◽  
M. Darathi ◽  
J. DaisyMagdaline ◽  
S. Gunasekaran

The molecular vibrations of Trichloro isocyanuric acid (C3Cl3N3O3) and Trithio cyanuric acid (C3H3N3S3) have been investigated in polycrystalline sample at room temperature by Fourier Transform Infrared (FT-IR) and FT-Raman spectroscopies in the region 4000-450 cm-1 and 4000-50 cm-1 respectively, which provide a wealth of structural information about the molecules. The spectra are interpreted with the aid of normal co-ordinate analysis following full structure optimization and force field calculations based on density functional theory   (DFT) using standard B3LYP / 6-311++ G (d, p) basis set for investigating the structural and spectroscopic properties. The vibrational frequencies are calculated and the scaled values are compared with experimental FT-IR and FT-Raman spectra. The scaled theoretical wave numbers shows very good agreement with experimental ones. The complete vibrational assignments are performed on the basis of potential energy distribution (PED) of vibrational modes, calculated with scaled quantum (SQM) method. Stability of the molecule arising from hyper conjugative interactions, charge delocalization has been analyzed using natural bond orbital (NBO) analysis. The results show that change in electron density (ED) in σ* and π* anti-bonding orbitals and second order delocalization   energy (E2) confirm the occurrence of Intra molecular Charge Transfer (ICT) within the molecule. The thermodynamic properties like heat capacity, entropy, enthalpy and zero point energy have been calculated for the molecule. The frontier molecular orbitals have been visualized and the HOMO-LUMO energy gap has been calculated. The Molecular Electrostatic Potential (MEP) analysis reveals the sites for electrophilic attack and nucleophilic reactions in the molecule.


1999 ◽  
Vol 579 ◽  
Author(s):  
Naoto Uimezawa ◽  
Susumu Saito

ABSTRACTWe study tile optical absorption spectra of Na clusters using the time-dependent density-functional theory with gradient correction. A jellium-sphere background model, which is free from basis-set incompleteness error and is suitable for the comparison of various theoretical methods, is adopted. For energies of surface-plasinon excitations governing profiles of photoabsorption spectra with huge oscillator strengths., the gradient correction by van Leeiiwen and Baerends with correct asymptotic behavior of the effective potential is found to show considerable improvement over the time-dependent local-density approximation.


2020 ◽  
Author(s):  
Robson de Farias

<p> The present work is another contribution to a better understanding of the chemical bond in C<sub>2</sub>. Several density functional approach/basis set provided calculated IR and Raman spectra with simultaneous active bands. Hence, the hypothesis of electronic asymmetry in C<sub>2</sub> [1] was reinforced. </p>


2020 ◽  
Author(s):  
Peter Banks ◽  
Zihui Song ◽  
Michael Ruggiero

The low-frequency (terahertz) dynamics of condensed phase materials provide valuable insight into numerous bulk phenomena. However, the assignment and interpretation of experimental results requires computational methods due to the complex mode-types that depend on weak intermolecular forces. Solid-state density functional theory has been used in this regard with great success, yet the selection of specific computational parameters, namely the chosen basis set and density functional, has a profound influence on the accuracy of predicted spectra. In this work, the role of these two parameters is investigated in a series of organic molecular crystals, in order to assess the ability of various methods to reproduce intermolecular forces, and subsequently experimental terahertz spectra. Specifically, naphthalene, oxalic acid, and thymine were chosen based on the varied intermolecular interactions present in each material. The results highlight that unconstrained geometry optimizations can be used as an initial proxy for the accuracy of interatomic forces, with errors in the calculated geometries indicative of subsequent errors in the calculated low-frequency vibrational spectra, providing a powerful metric for the validation of theoretical results. Finally, the origins of the observed shortcomings are analyzed, providing a basic framework for further studies on related materials.


2011 ◽  
Vol 66 (1) ◽  
pp. 69-76 ◽  
Author(s):  
Wolfgang Förner ◽  
Hassan M. Badawi

We have performed density functional calculations with the B3LYP functional and a 6-311G** basis set to obtain the vibrational spectra in harmonic approximation of the anti-leprosy drug Dapsone and the parent compound diphenylsulfone. Although the chemical difference between the two molecules is not that pronounced (Dapsone has amino groups in the para positions in the phenyl rings), Dapsone is an active drug, while to our knowledge diphenylsulfone shows no medical activity. We compared the theoretical results to experimental vibrational spectra found in the literature. With the help of the program GAUSSVIEW we were able to assign the experimentally found spectral lines to specific atomic motions. The remarkable difference between the two molecules, regarding their structural behavior, is that the drug Dapsone has a more flexible structure of the phenyl ring than the parent molecule has. This might contribute to a greater ability of the drug to fit into receptor sites in a cell membrane although one has to be well aware that this plays most propably only a minor role in the drug activity of Dapsone


2004 ◽  
Vol 82 (6) ◽  
pp. 987-997 ◽  
Author(s):  
P J.G Goulet ◽  
R F Aroca

In this work, surface-enhanced vibrational spectroscopy and normal vibrational spectroscopy as well as density functional theory (DFT) computational methods have been employed to investigate the nature of the chemical adsorption and orientation of the surface species generated from salicylic acid at silver surfaces. The structure of salicylic acid and its IR and Raman spectra are determined at the B3LYP/6-311+G(d,p) level of theory. These results are used in the assignment of the vibrational spectra. Surface-enhanced Raman scattering (SERS) spectra obtained from silver island films thinly coated with salicylic acid confirm chemical adsorption on the Ag nanostructures. To probe the nature of this surface complex, the optimized geometries and IR and Raman spectra of two model salicylate-silver complexes (Ag1 and Ag2) were calculated at the B3LYP/Lanl2DZ level of theory. It was found that good agreement exists between experimentally observed SERS spectra and the simulated SERS spectra of a complex with the salicylate monoanion bound to a Ag+ ion through its carboxylate group (Ag1). The carboxylate silver salt of salicylic acid (essentially the Ag1 complex) was also prepared, and its IR and Raman spectra were recorded for comparison with the surface-enhanced vibrational spectra. These results, along with the application of surface selection rules, suggest that salicylic acid is deprotonated at silver surfaces, interacting through its carboxylate group alone, and is preferentially in a tilted head-on orientation.Key words: chemisorption, salicylic acid, silver, density functional theory, surface-enhanced Raman scattering, reflection-absorption IR spectroscopy, surface-enhanced IR absorption.


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