scholarly journals Long Short-Term Memory Neural Networks for RNA Viruses Mutations Prediction

2021 ◽  
Vol 2021 ◽  
pp. 1-9
Author(s):  
Takwa Mohamed ◽  
Sabah Sayed ◽  
Akram Salah ◽  
Essam H. Houssein
Keyword(s):  
Neural Network ◽  
Language Processing ◽  
Short Term Memory ◽  
Rna Viruses ◽  
Antiviral Drugs ◽  
Rna Sequences ◽  
Text Data ◽  
Dna And Rna ◽  
Proposed Model ◽  
Drug Resistant Strains

Viral progress remains a major deterrent in the viability of antiviral drugs. The ability to anticipate this development will provide assistance in the early detection of drug-resistant strains and may encourage antiviral drugs to be the most effective plan. In recent years, a deep learning model called the seq2seq neural network has emerged and has been widely used in natural language processing. In this research, we borrow this approach for predicting next generation sequences using the seq2seq LSTM neural network while considering these sequences as text data. We used hot single vectors to represent the sequences as input to the model; subsequently, it maintains the basic information position of each nucleotide in the sequences. Two RNA viruses sequence datasets are used to evaluate the proposed model which achieved encouraging results. The achieved results illustrate the potential for utilizing the LSTM neural network for DNA and RNA sequences in solving other sequencing issues in bioinformatics.

Sentence similarity evaluation using Sent2Vec and siamese neural network with parallel structure

2021 ◽  
pp. 1-10
Author(s):  
Hye-Jeong Song ◽  
Tak-Sung Heo ◽  
Jong-Dae Kim ◽  
Chan-Young Park ◽  
Yu-Seop Kim
Keyword(s):  
Neural Network ◽  
Language Processing ◽  
Short Term Memory ◽  
Parallel Structure ◽  
Short Term ◽  
Similarity Estimation ◽  
Accurate Judgment ◽  
Proposed Model ◽  
Sentence Similarity ◽  
Long Short Term Memory

Sentence similarity evaluation is a significant task used in machine translation, classification, and information extraction in the field of natural language processing. When two sentences are given, an accurate judgment should be made whether the meaning of the sentences is equivalent even if the words and contexts of the sentences are different. To this end, existing studies have measured the similarity of sentences by focusing on the analysis of words, morphemes, and letters. To measure sentence similarity, this study uses Sent2Vec, a sentence embedding, as well as morpheme word embedding. Vectors representing words are input to the 1-dimension convolutional neural network (1D-CNN) with various sizes of kernels and bidirectional long short-term memory (Bi-LSTM). Self-attention is applied to the features transformed through Bi-LSTM. Subsequently, vectors undergoing 1D-CNN and self-attention are converted through global max pooling and global average pooling to extract specific values, respectively. The vectors generated through the above process are concatenated to the vector generated through Sent2Vec and are represented as a single vector. The vector is input to softmax layer, and finally, the similarity between the two sentences is determined. The proposed model can improve the accuracy by up to 5.42% point compared with the conventional sentence similarity estimation models.

scholarly journals A Neural Network Model for Attacker Detection using GRU and Modified Kernel of SVM

2019 ◽  
Vol 8 (2) ◽  
pp. 4441-4444
Keyword(s):  
Neural Network ◽  
Language Processing ◽  
Short Term Memory ◽  
Traditional Approach ◽  
Binary Classification ◽  
Support Vector ◽  
Output Layer ◽  
Proposed Model ◽  
Prediction Time ◽  
Linear Svm

over past few decades neural network changed the way of traditional computing many different models has proposed depending upon data intensity, predictions, and recognition and so on. Among which Gated Recurrent Unit (GRU) is created for variety of long short-term memory (LSTM) unit, which is part of recurrent neural network (RNN). These models proved to be dominant for range of machine learning job such as predictions, speech recognition, sentiment analysis and natural language processing. In this proposed model, a support vector machine (SVM) with modified kernel as final output layer for prediction is used instead of traditional approach of softmax and log loss function is used to calculate the loss. Proposed technique is applied for binary classification for intrusion detection using honeypot dataset (2013) network traffic sequence of Kyoto University. Results shows a prominent change in training efficiency of ≈89.45% and testing efficiency of ≈88.15% when compared with softmax output layer. We can conclude that linear SVM with modified kernel as output layer outperform compared with softmax in prediction time.

Evaluation of Impact of Neural Networks in Text Classification

2021 ◽  
Vol 23 (07) ◽  
pp. 1279-1292
Author(s):  
Meghana S ◽  
◽  
Jagadeesh Sai D ◽  
Dr. Krishna Raj P. M ◽  
◽  
...  
Keyword(s):  
Neural Network ◽  
Convolutional Neural Network ◽  
Language Processing ◽  
Recurrent Neural Network ◽  
Short Term Memory ◽  
Confusion Matrix ◽  
British Broadcasting Corporation ◽  
Text Data ◽  
N Gram ◽  
The Impact

One of the most trending and major areas of research in Natural Language Processing (NLP) is the classification of text data. This necessarily means that the category that the text belongs to is determined by the content of the text. Various algorithms such as Recurrent Neural Network along with its variation which is Long Short-Term Memory, Hierarchical Attention Networks and also Convolutional Neural Network have been used to analyse how the context of the text can be determined from the text data which in available in terms of datasets. These algorithms each have a special characteristic of their own. While Recurrent Neural Network maintains the structural sequence of the contexts, the Convolutional Neural Network manages to obtain the n-gram feature and the Hierarchical Attention Network manages the hierarchy of the documents or data. The above said algorithms have been implemented on the British Broadcasting Corporation News datasets. Various parameters such as recall, precision, accuracy etc. have been considered along with standards such as F1-score, confusion matrix etc. to deduce the impact.

scholarly journals Identifying protein subcellular localisation in scientific literature using bidirectional deep recurrent neural network

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Rakesh David ◽  
Rhys-Joshua D. Menezes ◽  
Jan De Klerk ◽  
Ian R. Castleden ◽  
Cornelia M. Hooper ◽  
...  
Keyword(s):  
Neural Network ◽  
Language Processing ◽  
Data Dissemination ◽  
Short Term Memory ◽  
Biological Data ◽  
Experimental Methodology ◽  
Subcellular Localisation ◽  
Crop Species ◽  
Deep Recurrent Neural Network ◽  
Functional Features

AbstractThe increased diversity and scale of published biological data has to led to a growing appreciation for the applications of machine learning and statistical methodologies to gain new insights. Key to achieving this aim is solving the Relationship Extraction problem which specifies the semantic interaction between two or more biological entities in a published study. Here, we employed two deep neural network natural language processing (NLP) methods, namely: the continuous bag of words (CBOW), and the bi-directional long short-term memory (bi-LSTM). These methods were employed to predict relations between entities that describe protein subcellular localisation in plants. We applied our system to 1700 published Arabidopsis protein subcellular studies from the SUBA manually curated dataset. The system combines pre-processing of full-text articles in a machine-readable format with relevant sentence extraction for downstream NLP analysis. Using the SUBA corpus, the neural network classifier predicted interactions between protein name, subcellular localisation and experimental methodology with an average precision, recall rate, accuracy and F1 scores of 95.1%, 82.8%, 89.3% and 88.4% respectively (n = 30). Comparable scoring metrics were obtained using the CropPAL database as an independent testing dataset that stores protein subcellular localisation in crop species, demonstrating wide applicability of prediction model. We provide a framework for extracting protein functional features from unstructured text in the literature with high accuracy, improving data dissemination and unlocking the potential of big data text analytics for generating new hypotheses.

scholarly journals Multi-Transformer: A New Neural Network-Based Architecture for Forecasting S&P Volatility

Mathematics ◽  
2021 ◽  
Vol 9 (15) ◽  
pp. 1794
Author(s):  
Eduardo Ramos-Pérez ◽  
Pablo J. Alonso-González ◽  
José Javier Núñez-Velázquez
Keyword(s):  
Neural Network ◽  
Language Processing ◽  
Short Term Memory ◽  
Risk Measures ◽  
Hybrid Models ◽  
Stock Volatility ◽  
Management Actions ◽  
Equity Risk ◽  
Hedging Strategies ◽  
Volatility Models

Events such as the Financial Crisis of 2007–2008 or the COVID-19 pandemic caused significant losses to banks and insurance entities. They also demonstrated the importance of using accurate equity risk models and having a risk management function able to implement effective hedging strategies. Stock volatility forecasts play a key role in the estimation of equity risk and, thus, in the management actions carried out by financial institutions. Therefore, this paper has the aim of proposing more accurate stock volatility models based on novel machine and deep learning techniques. This paper introduces a neural network-based architecture, called Multi-Transformer. Multi-Transformer is a variant of Transformer models, which have already been successfully applied in the field of natural language processing. Indeed, this paper also adapts traditional Transformer layers in order to be used in volatility forecasting models. The empirical results obtained in this paper suggest that the hybrid models based on Multi-Transformer and Transformer layers are more accurate and, hence, they lead to more appropriate risk measures than other autoregressive algorithms or hybrid models based on feed forward layers or long short term memory cells.

Adaptive particle swarm optimization algorithm based long short-term memory networks for sentiment analysis

2021 ◽  
pp. 1-17
Author(s):  
J. Shobana ◽  
M. Murali
Keyword(s):  
Particle Swarm Optimization ◽  
Sentiment Analysis ◽  
Language Processing ◽  
Short Term Memory ◽  
Contextual Information ◽  
Particle Swarm ◽  
Pso Algorithm ◽  
Swarm Optimization ◽  
Adaptive Particle Swarm Optimization ◽  
Proposed Model

Text Sentiment analysis is the process of predicting whether a segment of text has opinionated or objective content and analyzing the polarity of the text’s sentiment. Understanding the needs and behavior of the target customer plays a vital role in the success of the business so the sentiment analysis process would help the marketer to improve the quality of the product as well as a shopper to buy the correct product. Due to its automatic learning capability, deep learning is the current research interest in Natural language processing. Skip-gram architecture is used in the proposed model for better extraction of the semantic relationships as well as contextual information of words. However, the main contribution of this work is Adaptive Particle Swarm Optimization (APSO) algorithm based LSTM for sentiment analysis. LSTM is used in the proposed model for understanding complex patterns in textual data. To improve the performance of the LSTM, weight parameters are enhanced by presenting the Adaptive PSO algorithm. Opposition based learning (OBL) method combined with PSO algorithm becomes the Adaptive Particle Swarm Optimization (APSO) classifier which assists LSTM in selecting optimal weight for the environment in less number of iterations. So APSO - LSTM ‘s ability in adjusting the attributes such as optimal weights and learning rates combined with the good hyper parameter choices leads to improved accuracy and reduces losses. Extensive experiments were conducted on four datasets proved that our proposed APSO-LSTM model secured higher accuracy over the classical methods such as traditional LSTM, ANN, and SVM. According to simulation results, the proposed model is outperforming other existing models.

scholarly journals Part-of-Speech Tagging via Deep Neural Networks for Northern-Ethiopic Languages

2020 ◽  
Vol 49 (4) ◽  
pp. 482-494
Author(s):  
Jurgita Kapočiūtė-Dzikienė ◽  
Senait Gebremichael Tesfagergish
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Language Processing ◽  
Deep Neural Networks ◽  
Short Term Memory ◽  
Parameter Tuning ◽  
Feed Forward Neural Network ◽  
Pos Tagging ◽  
Part Of Speech ◽  
Pos Tagger

Deep Neural Networks (DNNs) have proven to be especially successful in the area of Natural Language Processing (NLP) and Part-Of-Speech (POS) tagging—which is the process of mapping words to their corresponding POS labels depending on the context. Despite recent development of language technologies, low-resourced languages (such as an East African Tigrinya language), have received too little attention. We investigate the effectiveness of Deep Learning (DL) solutions for the low-resourced Tigrinya language of the Northern-Ethiopic branch. We have selected Tigrinya as the testbed example and have tested state-of-the-art DL approaches seeking to build the most accurate POS tagger. We have evaluated DNN classifiers (Feed Forward Neural Network – FFNN, Long Short-Term Memory method – LSTM, Bidirectional LSTM, and Convolutional Neural Network – CNN) on a top of neural word2vec word embeddings with a small training corpus known as Nagaoka Tigrinya Corpus. To determine the best DNN classifier type, its architecture and hyper-parameter set both manual and automatic hyper-parameter tuning has been performed. BiLSTM method was proved to be the most suitable for our solving task: it achieved the highest accuracy equal to 92% that is 65% above the random baseline.

scholarly journals Enhancing the performance of cancer text classification model based on cancer hallmarks

2021 ◽  
Vol 10 (2) ◽  
pp. 316
Author(s):  
Noha Ali ◽  
Ahmed H. AbuEl-Atta ◽  
Hala H. Zayed
Keyword(s):  
Neural Network ◽  
Language Processing ◽  
Text Classification ◽  
State Of The Art ◽  
Classification Model ◽  
Biomedical Text ◽  
Cancer Hallmarks ◽  
Embedding Technique ◽  
Proposed Model ◽  
Biomedical Text Classification

<span id="docs-internal-guid-cb130a3a-7fff-3e11-ae3d-ad2310e265f8"><span>Deep learning (DL) algorithms achieved state-of-the-art performance in computer vision, speech recognition, and natural language processing (NLP). In this paper, we enhance the convolutional neural network (CNN) algorithm to classify cancer articles according to cancer hallmarks. The model implements a recent word embedding technique in the embedding layer. This technique uses the concept of distributed phrase representation and multi-word phrases embedding. The proposed model enhances the performance of the existing model used for biomedical text classification. The result of the proposed model overcomes the previous model by achieving an F-score equal to 83.87% using an unsupervised technique that trained on PubMed abstracts called PMC vectors (PMCVec) embedding. Also, we made another experiment on the same dataset using the recurrent neural network (RNN) algorithm with two different word embeddings Google news and PMCVec which achieving F-score equal to 74.9% and 76.26%, respectively.</span></span>

Production Forecasting with the Interwell Interference by Integrating Graph Convolutional and Long Short-Term Memory Neural Network

2021 ◽  
pp. 1-17
Author(s):  
Enda Du ◽  
Yuetian Liu ◽  
Ziyan Cheng ◽  
Liang Xue ◽  
Jing Ma ◽  
...  
Keyword(s):  
Neural Network ◽  
Short Term Memory ◽  
Short Term ◽  
Term Memory ◽  
Production Forecasting ◽  
Temporal Correlations ◽  
Proposed Model ◽  
The Mean ◽  
Long Short Term Memory ◽  
The Impact

Summary Accurate production forecasting is an essential task and accompanies the entire process of reservoir development. With the limitation of prediction principles and processes, the traditional approaches are difficult to make rapid predictions. With the development of artificial intelligence, the data-driven model provides an alternative approach for production forecasting. To fully take the impact of interwell interference on production into account, this paper proposes a deep learning-based hybrid model (GCN-LSTM), where graph convolutional network (GCN) is used to capture complicated spatial patterns between each well, and long short-term memory (LSTM) neural network is adopted to extract intricate temporal correlations from historical production data. To implement the proposed model more efficiently, two data preprocessing procedures are performed: Outliers in the data set are removed by using a box plot visualization, and measurement noise is reduced by a wavelet transform. The robustness and applicability of the proposed model are evaluated in two scenarios of different data types with the root mean square error (RMSE), the mean absolute error (MAE), and the mean absolute percentage error (MAPE). The results show that the proposed model can effectively capture spatial and temporal correlations to make a rapid and accurate oil production forecast.

scholarly journals Chinese Text Classification Model Based on Deep Learning

2018 ◽  
Vol 10 (11) ◽  
pp. 113 ◽  
Author(s):  
Yue Li ◽  
Xutao Wang ◽  
Pengjian Xu
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Language Processing ◽  
Chinese Text ◽  
Text Classification ◽  
Short Term Memory ◽  
Classification Model ◽  
Short Term ◽  
Term Memory ◽  
Long Short Term Memory

Text classification is of importance in natural language processing, as the massive text information containing huge amounts of value needs to be classified into different categories for further use. In order to better classify text, our paper tries to build a deep learning model which achieves better classification results in Chinese text than those of other researchers’ models. After comparing different methods, long short-term memory (LSTM) and convolutional neural network (CNN) methods were selected as deep learning methods to classify Chinese text. LSTM is a special kind of recurrent neural network (RNN), which is capable of processing serialized information through its recurrent structure. By contrast, CNN has shown its ability to extract features from visual imagery. Therefore, two layers of LSTM and one layer of CNN were integrated to our new model: the BLSTM-C model (BLSTM stands for bi-directional long short-term memory while C stands for CNN.) LSTM was responsible for obtaining a sequence output based on past and future contexts, which was then input to the convolutional layer for extracting features. In our experiments, the proposed BLSTM-C model was evaluated in several ways. In the results, the model exhibited remarkable performance in text classification, especially in Chinese texts.

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