Resistance profile and structural modeling of next-generation ROS1 tyrosine kinase inhibitors

2021 ◽  
pp. molcanther.MCT-21-0395-A.2021
Author(s):  
Clare Keddy ◽  
Pushkar Shinde ◽  
Kristen Jones ◽  
Stefanie Kaech ◽  
Romel Somwar ◽  
...  
2020 ◽  
Vol 2020 ◽  
pp. 1-8
Author(s):  
Omer Gal ◽  
Elizabeth Dudnik ◽  
Ofer Rotem ◽  
Inbar Finkel ◽  
Idit Peretz ◽  
...  

Central nervous system (CNS) metastases occur frequently in oncogene-driven non-small cell lung cancer (NSCLC). Standard treatment approaches can potentially delay systemic treatment (surgical intervention) or result in neurocognitive impairment (radiotherapy). Recently, next-generation tyrosine kinase inhibitors (TKIs) have demonstrated remarkable intracranial activity. However, most clinical trials did not enroll patients suffering neurological symptoms. Our study aimed to assess the CNS activity of targeted therapies in this patient population. We present a case series of nine NSCLC patients with either EGFR mutation or ALK rearrangement and symptomatic CNS metastases that were treated with TKIs. Clinicopathological characteristics, treatment, and outcomes were analyzed. Most patients presented with symptomatic CNS metastases at time of metastatic disease presentation (6/9). Additionally, the majority of patients had leptomeningeal disease (6/9) and multiple parenchymal metastases. Patients presented with a variety of CNS symptoms with the most common being nausea, vomiting, headache, and confusion. Most patients (6/9) responded rapidly both clinically and radiographically to the targeted treatment, with a marked correlation between systemic and intracranial radiographic response. In conclusion, upfront use of next-generation TKIs in patients with oncogene-driven NSCLC with symptomatic CNS metastases is associated with reasonable intracranial activity and represents a valuable treatment option.


2009 ◽  
Vol 33 (9) ◽  
pp. 1260-1265 ◽  
Author(s):  
Dongho Kim ◽  
Dong-Wook Kim ◽  
Byung-Sik Cho ◽  
Hyun-Gyung Goh ◽  
Soo-Hyun Kim ◽  
...  

Blood ◽  
2009 ◽  
Vol 114 (22) ◽  
pp. 3776-3776
Author(s):  
Allen Williams ◽  
Bao Nguyen ◽  
Mark Levis ◽  
Patrick Brown ◽  
Donald Small

Abstract Abstract 3776 Poster Board III-712 Mutations in the receptor tyrosine kinase FLT3 generally map to the kinase domain as point mutations or to the juxtamembrane domain as internal tandem duplications (ITDs). Both types of mutations lead to constitutive activation of the receptor and transformation of hematopoietic cell lines to cytokine independence. About 30% of acute myeloid leukemia (AML) cases harbor FLT3 mutations, which are now targets for inhibition by numerous small molecule tyrosine kinase inhibitors (TKIs). However, molecularly targeted inhibition of kinases in patients often leads to the emergence of clones that contain mutations within the targeted kinase that impair drug binding. This has been repeatedly demonstrated for BCR-ABL-directed inhibition by imatinib in chronic myeloid leukemia, in which numerous mutations have now been documented. Treatment for FLT3-driven leukemias may well follow suit as is evidenced by the detection of the N676K FLT3/ITD mutation in one patient that resulted in PKC412 resistance. In this study, we tested multiple FLT3 TKIs, some of which are currently in clinical trials for treatment of AML, against a panel of FLT3 mutations that were previously reported to confer resistance to a more limited panel of inhibitors. We also sought to identify new mutations in FLT3 that might impart some level of resistance to various inhibitors. To this end, we utilized a non-biased approach in which the XL1-Red E. coli mutator strain randomly generated mutations in the FLT3/ITD clone. After selecting cells for cytokine independence, mutants were grown in methylcellulose for two weeks in the presence of an inhibitor to select for resistance. The resulting cell clones were analyzed by Western blotting for their resistance to FLT3 inhibition as well as for increases in the IC50 to a variety of FLT3 TKIs in the MTT cell proliferation assay. After sequencing to uncover mutations within the rescued FLT3/ITD clone, site-directed mutagenesis was used to generate the mutations to confirm that they recapitulate the pattern of resistance seen in the selected resistant cell clones. BaF3 cells were nucleofected with the candidate FLT3 mutation and analyzed for their resistance profile. Our screen revealed three mutations within the drug binding cleft of FLT3/ITD, including F621L, A627P and F691L. In addition, one mutation in the second half of the kinase domain was identified, Y842C. TheY842C/ITD mutant produced high levels of resistance to sunitinib, sorafenib and AGL2043, but it retained sensitivity to CEP701 and PKC412. The F691L/ITD produced a resistance profile similar to the Y842C/ITD mutant with modest resistance to CEP701 and PKC412. The F621L mutant exhibited low levels of resistance to sunitinib and AGL2043 and was even more sensitive to inhibition by sorafenib, lestaurtinib and PKC412 than parental BaF3/ITD cells. The A627P mutant expressed lower levels of FLT3/ITD but displayed resistance to all inhibitors, similar to the resistance profile published for the A627E FLT3/ITD mutation found in one patient. Interestingly, the inhibitors that were most commonly affected by mutations were sunitinib>AGL2043>sorafenib> PKC412≥lestaurtinib. The results of our random mutagenesis screen indicate that there are still undiscovered mutations in FLT3 that confer resistance to TKIs in vitro and may arise during treatment of leukemia patients using FLT3 inhibitors. While lestaurtinib and PKC412 were more effective than the other inhibitors tested against this set of FLT3/ITD mutants, even a slight increase in their IC50 may preclude their use against some FLT3 mutants. The resistance profiles for these mutants will be presented as described in addition to other inhibitors that may soon become available. Disclosures: Levis: Cephalon: Member, clinical advisory board.


Blood ◽  
2014 ◽  
Vol 124 (21) ◽  
pp. 5510-5510
Author(s):  
Tomasz Stoklosa ◽  
Anna Deregowska ◽  
Joanna Drzewinska-Chanko ◽  
Joanna Barankiewicz ◽  
Machnicki M Marcin ◽  
...  

Abstract Introduction of tyrosine kinase inhibitors (TKI) to the therapy of chronic myeloid leukemia (CML) remains one of the most remarkable achievements in oncology. Five TKI are currently approved to treat patients with CML. While imatinib revolutionized the treatment of BCR/ABL1-positive leukemias and represents first-in-class selective inhibitor of ABL1 kinase, the place of next generation TKI in CML therapy is being a matter of an intensive debate. Dasatinib and nilotinib, both 2nd generations TKI, are approved as first or second line treatment, while bosutinib (2nd generation TKI) and ponatinib (3rdgeneration TKI) are restricted for patients resistant to the former ones. Recent reports, demonstrating unexpected side effects, including serious cardiovascular events, caused by next-generation TKIs, underscored that mechanism of TKI action is not fully understood and require further studies. The aim of the present study was to examine the possible role of different TKI in telomere-mediated chromosomal instability in CML cells. We employed human BCR-ABL1-positive cells (K562), and BCR-ABL1-negative cells (HL60), as well as murine myeloid 32Dcl3 cells with 32Dcl3 BCR-ABL1-positive counterparts. Additionally, CD34+ primary cells isolated from peripheral blood leukocytes of CML patients at various stages of the disease (chronic and blastic phase) were used. Blood samples were taken after informed consent. TKI concentrations were ranging from 1nM to 1uM for each TKI used in this study (imatinib, dasatinib, nilotinib, bosutinib and ponatinib), relevant to concentrations observed in patients in clinics. Upon incubation with different TKI, cells were subjected to micronuclei (MN) generation analysis by fluorescent in-situ hybridization (FISH) with pan-human centromere probe. FISH analysis was applied to centromere visualization in nuclei and micronuclei to reveal the generation of micronuclei (MN) and to determine if centromere fragments are present within MN. Analysis was performed at 24 and 48h time points. In BCR-ABL1-positive cells, highest (3-fold) change in MN frequency was observed after longer (48h) incubation with 100 nM imatinib, as compared to the control growth conditions. Less pronounced increase in MN generation with centromeric signals was observed in cells treated with next-generation TKI (dasatinib, nilotinib, bosutinib and ponatinib), which may indicate that different TKIs may exert different aneugenic effects. Such effects may be BCR-ABL1 kinase-independent, since we have also observed an increase in the frequency of MN in HL60 cells treated with 100 nM imatinib, as compared to control ones. It is widely accepted that genomic instability may be provoked, when the length of telomeres is affected, which, in turn, may induce the generation of micronuclei leading to aneuploidy or chromothripsis. To verify, if observed increase in MN generation after some TKI is caused by dysfunction of telomeres, maintenance of telomeres in BCR-ABL1-positive and negative cells treated with TKI was investigated. Enzymatic activity of telomerase was measured immunoenzymatically, length of telomeres was determined by Southern blotting and expression of TERT and TERC, the subunits of telomerase, were examined by qPCR. No significant changes in the length of telomeres and enzymatic activity of telomerase were observed upon treatment with different TKIs in K562 and HL60 cells as well as in murine leukemic cells. Neither expression of TERT nor TERC was affected by TKI. In conclusion, we postulate that BCR-ABL1- positive cells may activate the alternative lengthening of telomeres pathway and this might be affected by different TKI in a different manner by mechanisms which require additional studies. Disclosures No relevant conflicts of interest to declare.


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