scholarly journals Inferring excitation-inhibition dynamics using a maximum entropy model unifying brain structure and function

2021 ◽  
pp. 1-55
Author(s):  
Igor Fortel ◽  
Mitchell Butler ◽  
Laura E. Korthauer ◽  
Liang Zhan ◽  
Olusola Ajilore ◽  
...  

Abstract Neural activity coordinated across different scales from neuronal circuits to large-scale brain networks gives rise to complex cognitive functions. Bridging the gap between micro- and macro-scale processes, we present a novel framework based on the maximum entropy model to infer a hybrid resting state structural connectome, representing functional interactions constrained by structural connectivity. We demonstrate that the structurally informed network outperforms the unconstrained model in simulating brain dynamics; wherein by constraining the inference model with the network structure we may improve the estimation of pairwise BOLD signal interactions. Further, we simulate brain network dynamics using Monte Carlo simulations with the new hybrid connectome to probe connectome-level differences in excitation-inhibition balance between apolipoprotein E (APOE)-ε4 carriers and noncarriers. Our results reveal sex differences among APOE-ε4 carriers in functional dynamics at criticality; specifically, female carriers appear to exhibit a lower tolerance to network disruptions resulting from increased excitatory interactions. In sum, the new multimodal network explored here enables analysis of brain dynamics through the integration of structure and function, providing insight into the complex interactions underlying neural activity such as the balance of excitation and inhibition.

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Arian Ashourvan ◽  
Preya Shah ◽  
Adam Pines ◽  
Shi Gu ◽  
Christopher W. Lynn ◽  
...  

AbstractA major challenge in neuroscience is determining a quantitative relationship between the brain’s white matter structural connectivity and emergent activity. We seek to uncover the intrinsic relationship among brain regions fundamental to their functional activity by constructing a pairwise maximum entropy model (MEM) of the inter-ictal activation patterns of five patients with medically refractory epilepsy over an average of ~14 hours of band-passed intracranial EEG (iEEG) recordings per patient. We find that the pairwise MEM accurately predicts iEEG electrodes’ activation patterns’ probability and their pairwise correlations. We demonstrate that the estimated pairwise MEM’s interaction weights predict structural connectivity and its strength over several frequencies significantly beyond what is expected based solely on sampled regions’ distance in most patients. Together, the pairwise MEM offers a framework for explaining iEEG functional connectivity and provides insight into how the brain’s structural connectome gives rise to large-scale activation patterns by promoting co-activation between connected structures.


2018 ◽  
Author(s):  
Arian Ashourvan ◽  
Preya Shah ◽  
Adam Pines ◽  
Shi Gu ◽  
Christopher W. Lynn ◽  
...  

ABSTRACTA major challenge in systems neuroscience is to understand how the brain’s structural architecture gives rise to its complex functional dynamics. Here, we address this challenge by examining the inter-ictal activity of five patients with medically refractory epilepsy during ∼ 15 hours of multi-channel intracranial recording. By constructing a pairwise maximum entropy model (MEM) of the observed neural dynamics, we seek to uncover the fundamental relationship between functional activity and its underlying structural substrate. Despite only incorporating the pairwise correlations in the observed neural activity, we find that the pairwise MEM robustly fits large-scale patterns of inter-ictal power dynamics across a wide range of frequency bands, notably displaying time-invariance and cross-frequency similarity. Furthermore, across all frequency bands, we demonstrate that the pairwise MEM accurately identifies the structural white matter connections between brain regions, outperforming other common model-free measures of functional connectivity. Together, our findings show that a simple pairwise MEM, which is explicitly ignorant of higher-order correlations between three or more brain regions, not only captures complex spatiotemporal patterns of neural activity across the frequency spectrum, but also suggests that the network of structural connections in the human brain is a plausible scaffold capable of supporting observed wide-band neural dynamics.


2005 ◽  
Vol 6 (S1) ◽  
pp. 47-52
Author(s):  
Li-juan Qin ◽  
Yue-ting Zhuang ◽  
Yun-he Pan ◽  
Fei Wu

2017 ◽  
Vol 24 (3) ◽  
pp. 277-293 ◽  
Author(s):  
Selen Atasoy ◽  
Gustavo Deco ◽  
Morten L. Kringelbach ◽  
Joel Pearson

A fundamental characteristic of spontaneous brain activity is coherent oscillations covering a wide range of frequencies. Interestingly, these temporal oscillations are highly correlated among spatially distributed cortical areas forming structured correlation patterns known as the resting state networks, although the brain is never truly at “rest.” Here, we introduce the concept of harmonic brain modes—fundamental building blocks of complex spatiotemporal patterns of neural activity. We define these elementary harmonic brain modes as harmonic modes of structural connectivity; that is, connectome harmonics, yielding fully synchronous neural activity patterns with different frequency oscillations emerging on and constrained by the particular structure of the brain. Hence, this particular definition implicitly links the hitherto poorly understood dimensions of space and time in brain dynamics and its underlying anatomy. Further we show how harmonic brain modes can explain the relationship between neurophysiological, temporal, and network-level changes in the brain across different mental states ( wakefulness, sleep, anesthesia, psychedelic). Notably, when decoded as activation of connectome harmonics, spatial and temporal characteristics of neural activity naturally emerge from the interplay between excitation and inhibition and this critical relation fits the spatial, temporal, and neurophysiological changes associated with different mental states. Thus, the introduced framework of harmonic brain modes not only establishes a relation between the spatial structure of correlation patterns and temporal oscillations (linking space and time in brain dynamics), but also enables a new dimension of tools for understanding fundamental principles underlying brain dynamics in different states of consciousness.


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