Aphelenchoidid nematodes associated with two dominant Ficus species in Aceh, Indonesia

Nematology ◽  
2017 ◽  
Vol 19 (3) ◽  
pp. 323-331 ◽  
Author(s):  
Rina Sriwati ◽  
Yuko Takeuchi-Kaneko ◽  
J. Jauharlina ◽  
Natsumi Kanzaki

Aphelenchoidid nematodes associated with the syconia of two dominant fig species,Ficus hispidaandF. racemosa, were surveyed in Banda Aceh, Indonesia. Nematodes were isolated from sycones and pollinating wasps of these two fig species from four localities in the area, and identified based on the molecular sequences of two genetic loci, D2-D3 expansion segments of large subunit ribosomal RNA (D2-D3 LSU) and mitochondrial cytochrome oxidase subunit I (mtCOI). Molecular sequences of D2-D3 LSU and mtCOI were successfully determined for 44 and 19 individual nematodes, respectively, and these sequences were separated into four clades,i.e., types A-D of D2-D3 LSU and types I-IV of mtCOI. Phylogenetic analysis of the DNA sequences deposited in the GenBank database showed that the DNA sequences corresponded to three species, namely,Martininema baculum(type B/II),Ficophagus fleckeri(types A/I, D/IV) andF. cf.centerae(type C/III). Within these species,F. fleckeriwas separated into two clades as suggested in previous studies and thus it may possibly reflect the existence of two different taxa,F. fleckeriand a cryptic species. The IndonesianF. cf.centeraewas monophyletic with, but clearly separated from, the Chinese population ofF. centeraeand thus the Indonesian population is potentially an undescribed species. Overall, the species composition of fig-associated aphelenchoidids in the Aceh region seemed intermediate between continental Chinese and Australian species. However, further material collections followed by detailed morphological analyses are necessary to characterise or describe these fig-associated aphelenchoidids in Indonesia.

2021 ◽  
Vol 18 (1) ◽  
pp. 74
Author(s):  
I Putu Sudiarta ◽  
Dewa Gede Wiryangga Selangga ◽  
Gusti Ngurah Alit Susanta Wirya ◽  
Ketut Ayu Yuliadhi ◽  
I Wayan Susila ◽  
...  

Sycanus aurantiacus Ishikawa & Okajima, found in Bali, was first described in 2007 as a new harpactorine species based on morphological and biological characteristics; however, its genome has not yet been sequenced. In this study, we examine the mitochondrial cytochrome oxidase subunit I (MtCOI) nucleotide sequence of S. aurantiacus in order to determine whether it represents a new harpactorine species. A sample from Pancasari, Bali, Indonesia was collected at the same location S. aurantiacus was first discovered in 2007. The selected mtCOI gene (650 bp) was successfully amplified using mtCOI primer pairs LCO1490 and HCO2198, and the resulting MtCOI sequence of the S. aurantiacus sample was compared with those from other hapactorine species recorded in GenBank. This comparison revealed low genetic similarity between S. aurantiacus and most other harpactorine species worldwide, except for the Genus Sycanus (JQ888697) from USA whose mtCOI shares approximately 91% similarity with the Pancasari sample. Phylogenetic analysis indicated a close genetic relationship between Sycanus from Bali and the Genus Sycanus (JQ888697) from the USA. The mtCOI sequence of S. aurantiacus had not been recorded previously, and our comparison with existing Sycanus sequences provides support to the understanding that S. aurantiacus is indeed its own species.


Zootaxa ◽  
2021 ◽  
Vol 4933 (3) ◽  
pp. 422-434
Author(s):  
DO VAN TU ◽  
CAO THI KIM THU ◽  
THOMAS VON RINTELEN

The first stygobitic species of atyid freshwater shrimps from Vietnam is described from Cuc Phuong National Park, Northern Vietnam. Caridina thachlam sp. nov. can be distinguished from its congeners by a suite of morphological characters such as strongly reduced eyes without eyestalk, short and almost unarmed rostrum and slender pereiopods. Molecular phylogenetic data from the mitochondrial cytochrome oxidase subunit I (COI) and 16S ribosomal RNA genes also support the distinctiveness of the new species from all other species that we have examined. 


PLoS ONE ◽  
2021 ◽  
Vol 16 (1) ◽  
pp. e0244653
Author(s):  
Natsumi Kanzaki ◽  
Taisuke Ekino ◽  
Keiko Hamaguchi ◽  
Yuko Takeuchi-Kaneko

A preliminary survey of Seinura spp. was conducted in the Kyoto area, Western Japan. The survey yielded four new strains of Seinura spp., including two strains of S. caverna, a strain of S. italiensis, and a strain of an undescribed species. Molecularly, the two strains of S. caverna were nearly identical to the type strain but showed some minor variations, particularly in the mitochondrial cytochrome oxidase subunit I gene. The small subunit and D2-D3 large subunit sequences of the Japanese strain of S. italiensis were nearly identical and identical to its original description, respectively, and the difference in the small subunit was due to mis-reading of the sequences. The new species, S. shigaensis n. sp., was phylogenetically close to S. caverna and S. persica, although these three species were clearly different phylogenetically. The new species was typologically similar or nearly identical to several other Seinura spp., including S. chertkovi, S. christiei, S. italiensis, S. steineri, and S. tenuicaudata, but it can be distinguished from those species by the morphometric values. Because the new species is phylogenetically very close to S. caverna, it could be a good comparative system for S. caverna as a potential satellite model for the predatory nematode.


PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6371 ◽  
Author(s):  
Jan Vicente ◽  
Jaime Andrés Ríos ◽  
Sven Zea ◽  
Robert J. Toonen

Neopetrosia proxima(Porifera: Demospongiae: Haplosclerida) is described as a morphologically variable sponge common on shallow reefs of the Caribbean. However, the range of morphological and reproductive variation within putativeN. proximaled us to hypothesize that such variability may be indicative of cryptic species rather than plasticity. Using DNA sequences and morphological characters we confirmed the presence of three previously undescribed species ofNeopetrosia. Morphological differences of each new congener were best resolved by partial gene sequences of the mitochondrial cytochrome oxidase subunit 1 over nuclear ones (18S rRNA and 28S rRNA). Several new characters forNeopetrosiawere revealed by each new species. For example,N. dendrocrevaceasp. nov. andN. cristatasp. nov. showed the presence of grooves on the surface of the sponge body that converge at the oscula, and a more disorganized skeleton than previously defined for the genus.N. sigmaferasp. nov. adds the (1) presence of sigma microscleres, (2) significantly wider/longer oxeas (>200 μm), and (3) the presence of parenchymella larvae. Sampling of conspecifics throughout several locations in the Caribbean revealed larger spicules in habitats closer to the continental shelf than those in remote island locations. Our study highlights the importance of integrating molecular and morphological systematics for the discrimination of newNeopetrosiaspp. despite belonging to one of several polyphyletic groups (families, genera) within the current definition of the order Haplosclerida.


2020 ◽  
Vol 69 (3) ◽  
pp. 283-288
Author(s):  
Miloš Černý ◽  
Jiří Kocián ◽  
Jan Ševčík

Abstract A male of Chromatomyia aizoon (Hering, 1932) (Diptera: Agromyzidae) was reared from a leaf mine at Saxifraga paniculata collected in Štramberk (Northern Moravia, Czech Republic). Partial sequence of the mitochondrial cytochrome oxidase subunit I (COI barcode region, 658 bp) is also provided.


Crustaceana ◽  
2021 ◽  
Vol 94 (10) ◽  
pp. 1201-1220
Author(s):  
Qinghua Chen ◽  
Wenjian Chen ◽  
Yuanwei Hu ◽  
Ka Yan Ma ◽  
Zhaoliang Guo

Abstract This study dealt with three species of ornamental palaemonid freshwater prawns of the genus Macrobrachium, based on morphological and molecular analysis. Macrobrachium pentazona He, Gao & Guo, 2009; M. laevis Zheng, Chen & Guo, 2019; and M. bilineare sp. nov. are distinguishable from closely related species by segmental ratios, spination of the second pereiopods and the slender scaphocerite. Macrobrachium bilineare sp. nov. can easily be recognized in the field by its bright colour pattern. Molecular evidence of mitochondrial cytochrome oxidase subunit I (COI), also supports the characterization of this new species, raising the total number of Macrobrachium spp. known from China to 41. Detailed description, illustrations, colour photographs, habitat information, distribution maps and features of conservation significance are also briefly discussed.


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