scholarly journals Otto Müller’s Surirella taxa (Bacillariophyta) from East Africa, based on a historical collection kept at the Botanic Garden and Botanical Museum Berlin-Dahlem (B)

Afrika Focus ◽  
2008 ◽  
Vol 21 (1) ◽  
pp. 65-75
Author(s):  
Christine Cocquyt ◽  
Wolf-Henning Kusber ◽  
Regine Jahn

At the beginning of the 20th century, Otto Müller described over 100 new freshwater diatom taxa from algae samples, collected during the German “Nyassa-See- und Kinga-Gebirgs-Expedition” in East Africa. He published valuable drawings and wrote detailed descriptions of these microalgae, but subsequent authors regarded many of these African taxa to be synonyms or infraspecific of European species. In the last two decades renewed attention to the diatom flora of East Africa has made it evident that Müller’s taxa have to be reinvestigated, in terms of both light as well as scanning electron microscopy, in order to evaluate possible new or endemic species. This was recently done for his Surirella taxa, a typical component of the African Great Lakes diatom flora of which many species are endemic to this area. Additional data, originating from material of later periods in the same region (e.g. Lakes Tanganyika, Malawi, Victoria, Edward), was incorporated in the investigation to study the variability in valve morphology and the African distribution of each species. Otto Müller’s samples thus provide the means to study historical African diatom diversity as a baseline for modern biodiversity assessment Type information and the English description for taxon have been published in international journals and online at the AlgaTerra Information System [www.algaterra.org], a site developed and updated by the Botanic Garden and Botanical Museum Berlin-Dahlem (BGBM). High resolution digital photographs of the Surirella taxa will also be available in the future on the API website [www.aluka.org.

Afrika Focus ◽  
2008 ◽  
Vol 21 (1) ◽  
Author(s):  
Christine Cocquyt ◽  
Wolf-Henning Kusber ◽  
Regine Jahn

At the beginning of the 20th century, Otto Müller described over 100 new freshwater diatom taxa from algae samples, collected during the German “Nyassa-See– und Kinga-Gebirgs-Expedition” in East Africa. He published valuable drawings and wrote detailed descriptions of these micro-algae, but subsequent authors regarded many of these African taxa to be synonyms or infraspecific of European species. In the last two decades renewed attention to the diatom flora of East Africa has made it evident that Müller’s taxa have to be reinvestigated, in terms of both light as well as scanning electron microscopy, in order to evaluate possible new or endemic species. This was recently done for his Surirella taxa, a typical component of the African Great Lakes diatom flora of which many species are endemic to this area. Additional data, originating from material of later periods in the same region (e.g. Lakes Tanganyika, Malawi, Victoria, Edward), was incorporated in the investigation to study the variability in valve morphology and the African distribution of each species. Otto Müller’s samples thus provide the means to study historical African diatom diversity as a baseline for modern biodiversity assessment. Type information and the English description for taxon have been published in international journals and online at the AlgaTerra Information System [www.algaterra.org], a site developed and updated by the Botanic Garden and Botanical Museum Berlin-Dahlem (BGBM). High resolution digital photographs of the Surirella taxa will also be available in the future on the API website [www.aluka.org]. Key words: Algae, Diatoms, Historic Collections, East Africa 


2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Danying Shao ◽  
Nabeel Ahmed ◽  
Nishant Soni ◽  
Edward P. O’Brien

Abstract Background Translation is a fundamental process in gene expression. Ribosome profiling is a method that enables the study of transcriptome-wide translation. A fundamental, technical challenge in analyzing Ribo-Seq data is identifying the A-site location on ribosome-protected mRNA fragments. Identification of the A-site is essential as it is at this location on the ribosome where a codon is translated into an amino acid. Incorrect assignment of a read to the A-site can lead to lower signal-to-noise ratio and loss of correlations necessary to understand the molecular factors influencing translation. Therefore, an easy-to-use and accurate analysis tool is needed to accurately identify the A-site locations. Results We present RiboA, a web application that identifies the most accurate A-site location on a ribosome-protected mRNA fragment and generates the A-site read density profiles. It uses an Integer Programming method that reflects the biological fact that the A-site of actively translating ribosomes is generally located between the second codon and stop codon of a transcript, and utilizes a wide range of mRNA fragment sizes in and around the coding sequence (CDS). The web application is containerized with Docker, and it can be easily ported across platforms. Conclusions The Integer Programming method that RiboA utilizes is the most accurate in identifying the A-site on Ribo-Seq mRNA fragments compared to other methods. RiboA makes it easier for the community to use this method via a user-friendly and portable web application. In addition, RiboA supports reproducible analyses by tracking all the input datasets and parameters, and it provides enhanced visualization to facilitate scientific exploration. RiboA is available as a web service at https://a-site.vmhost.psu.edu/. The code is publicly available at https://github.com/obrien-lab/aip_web_docker under the MIT license.


Phytotaxa ◽  
2021 ◽  
Vol 480 (3) ◽  
pp. 284-290
Author(s):  
QI LIU ◽  
JIAJIA LI ◽  
QUANXI WANG ◽  
JOHN PATRICK KOCIOLEK Patrick Kociolek ◽  
Shulian Xie

A new species, Encyonema oblonga Liu & Xie, is collected during a survey of the freshwater diatom flora of Manghe River, Shanxi, China. The valves of this new species are oblong with rounded apices and have the features typical of Encyonema, including complex areolae. We compare the new species with the most similar taxa, E. leei, E. leei var. sinensis and E. appalachianum and consider that  E. leei var. sinensis is the valid name.  The morphology of E. oblonga is documented with light and scanning electron microscopy.


PeerJ ◽  
2016 ◽  
Vol 4 ◽  
pp. e1705 ◽  
Author(s):  
Sergi Pla-Rabés ◽  
Paul B. Hamilton ◽  
Enric Ballesteros ◽  
Maria Gavrilo ◽  
Alan M. Friedlander ◽  
...  

We examined diatom assemblages from 18 stream and pond samples in the Franz Josef Land Archipelago (FJL), the most northern land of Eurasia. More than 216 taxa were observed, revealing a rich circumpolar diatom flora, including many undescribed taxa. Widely distributed taxa were the most abundant by cell densities, while circumpolar taxa were the most species rich. Stream and pond habitats hosted different assemblages, and varied along a pH gradient.Diatoma tenuiswas the most abundant and ubiquitous taxon. However, several circumpolar taxa such asChamaepinnularia gandrupii, Cymbella botellus, Psammothidiumsp. andHumidophila laevissimawere also found in relatively high abundances. Aerophilic taxa were an important component of FJL diatom assemblages (Humidophilaspp.,Caloneisspp. andPinnulariaspp.), reflecting the large and extreme seasonal changes in Arctic conditions. We predict a decrease in the abundance of circumpolar taxa, an increase in local (α-) freshwater diatom diversity, but a decrease in regional diversity (circumpolar homogenization) as a result of current warming trends and to a lesser extent the increasing human footprint in the region.


2015 ◽  
Vol 65 (Pt_1) ◽  
pp. 23-29 ◽  
Author(s):  
Dominique Gueule ◽  
Gérard Fourny ◽  
Elisabeth Ageron ◽  
Anne Le Flèche-Matéos ◽  
Mathias Vandenbogaert ◽  
...  

Six isolates recovered from coffee seeds giving off a potato-like flavour were studied. Gene sequencing (rrs and rpoB) showed they belong to the genus Pantoea . By DNA–DNA hybridization, the isolates constituted a genomic species with less than 17 % relatedness to 96 strains representing enterobacterial species. Multilocus sequence analysis (gyrB, rpoB, atpD and infB genes) showed the isolates to represent a discrete species of the genus Pantoea . Nutritional versatility of the novel species was poor. The novel species is proposed as Pantoea coffeiphila sp.nov. and its type strain is Ca04T ( = CIP 110718T = DSM 28482T).


2019 ◽  
Vol 152 (2) ◽  
pp. 385-391
Author(s):  
Valeria Casa ◽  
Gabriela Mataloni ◽  
Bart Van de Vijver

Background and aims – A few years ago, a new survey started of the freshwater diatom flora from peatbogs of Tierra del Fuego (southern Argentina). During this survey, an unknown fragilarioid diatom belonging to the genus Distrionella that could not be identified using the currently available literature was discovered. Methods – Using both Light Microscopical and Scanning Electron Microscopical techniques, the morphology of the unknown Distrionella species has been analysed. The new taxon is properly described, illustrated and compared with all other possible similar Distrionella taxa, known worldwide. Key results – Distrionella coxiana possesses a unique combination of morphological features that excludes conspecificity with all other members of the genus; it is characterized in having narrow, linear valves with small, capitate apices. Transapical ribs, a typical feature of the genus Distrionella, are only weakly developed. One rimoportula is observed close to the apices. Both apices have well-developed apical porefields. The girdle bands bear one complete row of poroids often accompanied by a second, incomplete row of small poroids. Notes on the occurrence and ecology of the new taxon are added.


2001 ◽  
Vol 13 (1) ◽  
pp. 28-36 ◽  
Author(s):  
Bart Van De Vijver ◽  
Pieter Ledeganck ◽  
Louis Beyens

A limited sampling campaign on the main island of Îles Kerguelen revealed 170 freshwater diatom taxa, belonging to 29 genera. Four different communities were distinguished in two major groups, being determined principally by habitat type. The Fragilaria vaucheriae–Fragilaria germainii assemblage occurs exclusively in running waters. The three other communities, observed in standing waterbodies, are separated by their geographical position on the island with the Fragilaria exigua–Aulacoseira alpigena and the Fragilaria exigua–Fragilaria vaucheriae assemblages, mainly found in the Lac Studer area and the Fragilaria pinnata var. pinnata assemblage, recorded near the coastal line and the research station. Analysis of different waterbody types revealed the habitat preference of the various diatom taxa and identified a diatom flora for running waters and one preferring stagnant waterbodies.


2016 ◽  
Vol 46 (2-3) ◽  
pp. 158-186
Author(s):  
Felicitas Becker

This paper offers a close examination of statements on patriarchal masculinity from three widely traded sermon recordings produced in Zanzibar, Tanzania. It sets them in the context of Islamic reform, Muslim political discontent, and the consumption of sermon recordings in East Africa. Despite similar assertions on the need for men to protect and control women, in close reading the three preachers offer quite divergent characterisations of the patriarch’s methods, obligations, and entitlements within the household. The sermons show that Islamic reform in Zanzibar cannot be reduced to political discontent, and that it hearkens back to longstanding regional history. They also suggest that the concept of patriarchy is more relevant to the understanding of asymmetrical gender relations than recent discussion of Western gender relations has allowed, and highlight the centrality of bearing and rearing children as a site for both assertion and failure of patriarchal control. Lastly, they indicate the failure of sermon preachers and listeners to coalesce into a coherent counterpublic.


Author(s):  
Sean Andrew Wempe

Chapter 2 looks at memory and imperial identity among former German settlers, those repatriated to Germany from East Africa after the First World War. Many former settlers, both those who had been repatriated and those who remained in Africa in the new mandates controlled by Britain and South Africa, sought naturalization in other European empires or petitioned the new international system in hopes of autonomous rule for a German-African state that would answer only to the League of Nations itself. Like Pieter Judson’s ethnic communities in the Habsburg borderlands and Tara Zahra’s “nationally indifferent” Germans in the Bohemian lands, German settlers in and from Africa mercurially adapted their understandings of nationality in pursuit of their own self-interests. This chapter analyzes the ways in which the colony became the preferred locus of German identity for civilians who had lived in Germany’s largest settler colonies, German East Africa. The author focuses on memoirs of repatriated settlers who spent seven years or more in East Africa in order to demonstrate how the colony became a site of memory that served as a foil to what they viewed as the decaying German nation in Europe. Narratives of individuals from the German settlements of Morogoro, Tanga, Iringa, and Dar Es Salaam feature in this section, offering a balance of interior and coastal settings. The sample includes male and female settlers, taking into account a number of occupations and varying durations of settlement in the colonies.


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