Phylogenetic and morphological circumscription of the Orbilia aurantiorubra group 

Phytotaxa ◽  
2014 ◽  
Vol 175 (1) ◽  
pp. 1 ◽  
Author(s):  
Luis Quijada ◽  
HANS-OTTO BARAL ◽  
RUTH JAEN-MOLINA ◽  
MICHAEL WEISS ◽  
JULI CAUJAPé-Castells ◽  
...  

The phylogeny of Orbilia aurantiorugra and related species is inferred from ITS sequence data. Orbilia aurantiorubra is redefined according to vital taxonomy. Integrated analyses of molecular and morphological data, and ecological (e.g. substrate) and geographical origin suggest the existence of three new species, which are described in this paper: Orbilia xanthoguttulata from Europe, O. succulenticola from the Canary Islands, and O. jugulospora from Ethiopia (Africa) and Taiwan (Southeast Asia).

Phytotaxa ◽  
2016 ◽  
Vol 280 (2) ◽  
pp. 116 ◽  
Author(s):  
HUILI LI ◽  
XUELAN MA ◽  
PETER E. MORTIMER ◽  
SAMANTHA C. KARUNARATHNA ◽  
JIANCHU XU ◽  
...  

Four specimens of Phallus were collected during surveys in a Pinus armandii forest in Baoshan, Yunnan Province, China. Macro- and micro-characteristics, together with Internal Transcribed Spacer (ITS) sequence data, showed that the four specimens belong to a new species, here named Phallus haitangensis. The ITS phylogenetic analyses, morphological descriptions, color photographs, and line drawings are provided, and compared with closely related species in the genus.


2020 ◽  
Vol 45 (1) ◽  
pp. 46-67 ◽  
Author(s):  
S. Bien ◽  
C. Kraus ◽  
U. Damm

Strains with a yeast-like appearance were frequently collected in two surveys on the biodiversity of fungi in Germany, either associated with necroses in wood of Prunus trees in orchards in Saxony, Lower Saxony and Baden-Württemberg or captured in spore traps mounted on grapevine shoots in a vineyard in Rhineland-Palatinate. The morphology of the strains was reminiscent of the genus Collophorina: all strains produced aseptate conidia on integrated conidiogenous cells directly on hyphae, on discrete phialides, adelophialides and by microcyclic conidiation, while in some strains additionally endoconidia or conidia in conidiomata were observed. Blastn searches with the ITS region placed the strains in the Leotiomycetes close to Collophorina spp. Analyses based on morphological and multi-locus sequence data (LSU, ITS, EF-1α, GAPDH) revealed that the 152 isolates from wood of Prunus spp. belong to five species including C. paarla, C. africana and three new species. A further ten isolates from spore traps belonged to seven new species, of which one was isolated from Prunus wood as well. However, a comparison with both LSU and ITS sequence data of these collophorina-like species with reference sequences from further Leotiomycetes revealed the genus Collophorina to be polyphyletic and the strains to pertain to several genera within the Phacidiales. Collophorina paarla and C. euphorbiae are transferred to the newly erected genera Pallidophorina and Ramoconidiophora, respectively. The new genera Capturomyces, Variabilispora and Vexillomyces are erected to accommodate five new species isolated from spore traps. In total nine species were recognised as new to science and described as Collophorina badensis, C. germanica, C. neorubra, Capturomyces funiculosus, Ca. luteus, Tympanis inflata, Variabilispora flava, Vexillomyces palatinus and V. verruculosus.


Zootaxa ◽  
2018 ◽  
Vol 4524 (5) ◽  
pp. 501 ◽  
Author(s):  
ISHAN AGARWAL ◽  
STEPHEN MAHONY ◽  
VARAD B. GIRI ◽  
R. CHAITANYA ◽  
AARON M. BAUER

We use mitochondrial sequence data to identify divergent lineages within the gekkonid genus Cyrtodactylus in northeast India and use morphological data to describe six new species from within the Indo-Burma clade of Cyrtodactylus. The new species share an irregular colour pattern but differ from described species from the region in morphology and mitochondrial sequence data (>11 % uncorrected pairwise sequence divergence). Three new species are from along the Brahmaputra River and three are from mountains south of the Brahmaputra, including the largest Cyrtodactylus from India and the fifth gecko to be described from a major Indian city, Guwahati. 


Phytotaxa ◽  
2018 ◽  
Vol 369 (4) ◽  
pp. 241 ◽  
Author(s):  
CHUAN-GEN LIN ◽  
ERIC H. C. MCKENZIE ◽  
DARBHE J. BHAT ◽  
JIAN-KUI LIU ◽  
KEVIN D. HYDE ◽  
...  

A new species, Pseudodactylaria brevis, is described, illustrated and compared with other Pseudodactylaria and Dactylaria-like taxa. Evidence for the new species is provided by morphological comparison and sequence data analyses. Pseudodactylaria brevis can be distinguished from other Pseudodactylaria and Dactylaria-like species by its short hyaline conidiophores and fusiform, 1-septate hyaline conidia. Phylogenetic analysis of LSU and ITS sequence data was carried out to determine the phylogenetic placement of the species and confirm the taxonomic status of Pseudodactylariaceae.


PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e9352
Author(s):  
Barbara Maria Patoleta ◽  
Joanna Gardzińska ◽  
Marek Żabka

The study is based on new material from the collections of the Naturalis Biodiversity Centre in Leiden (RNHM) and the Hungarian Natural History Museum (HNHM) and addresses issues in two genera: Epeus Peckham & Peckham, 1886 and Ptocasius Simon, 1885 from Thailand. Both genera are of Asian/Indomalayan origin, the latter with a diversity hotspot in the subtropical valleys of the Himalayas. Based on morphological data, we propose three new species of Epeus (Epeus daiqini sp. nov. (♂♀), Epeus pallidus sp. nov. (♀), Epeus szirakii sp. nov. (♀)) and two new species of Ptacasius (Ptocasius metzneri sp. nov. (♂♀) and Ptocasius sakaerat sp. nov. (♀)). Additionally, we redescribed E. tener (Simon, 1877) and added photographs of morphological characters. The genus Ptocasius is redefined due to the inclusion of 37 species, previously included in Yaginumaella Prószyński, 1979. Relationships and distribution of both genera are discussed in reference to molecular, morphological and distributional data, published by other authors in recent years.


Phytotaxa ◽  
2014 ◽  
Vol 186 (1) ◽  
pp. 51 ◽  
Author(s):  
Qiu-Xiang Chen ◽  
Gui-Zhen Chen ◽  
Ming-He Li ◽  
Shi-Pin Chen

In this study, we describe a new orchid species, Goodyera malipoensis, from Yunnan, China. We have performed morphological and molecular analyses on this new species. A detailed comparison between the newly discovered orchid and other members of Goodyera was conducted. The new plant is characterized by having a dense brownish green pubescence on the peduncle. Its ovate-lanceolate petal is unique in Goodyera genus. The hypochile is deeply concave-saccate, and inside there are two papillose rows on each side. These features distinguish the new orchid from all other known species of Goodyera. The molecular study based on nuclear ribosomal ITS sequence data and morphological differences support G. malipoensis as a distinct species.


Zootaxa ◽  
2017 ◽  
Vol 4362 (2) ◽  
pp. 294
Author(s):  
PONGSAK LAUDEE ◽  
KRIENGKRAI SEETAPAN ◽  
HANS MALICKY

Three new species of Ceraclea (Leptoceridae) from Southeast Asia are described and illustrated: Ceraclea (Athripsodina) trisdikooni n. sp. from Myanmar, C. (A.) thongnooi n. sp. from Thailand and Myanmar and C. (A.) thongpongi n. sp. from Laos. Ceraclea trisdikooni n. sp. is distinguished from other species by its inferior appendages recurved ventrad nearly 180° apically. The apex of the basal segment of each inferior appendage is more pointed. In ventral view, each inferior appendage of the new species has an obvious basoventral lobe with numerous long setae. Ceraclea thongnooi n. sp. is distinguished from those by inferior appendages that are each shaped like a seahorse head both in lateral view and ventral view. Ceraclea thongpongi n. sp. is distinguished from other species by the rectangular preanal appendages. In dorsal view, the apical end of segment X is oval and notched apically; in ventral view, the subapicodorsal lobe of each inferior appendage is rounded and straight. 


Phytotaxa ◽  
2014 ◽  
Vol 189 (1) ◽  
pp. 186 ◽  
Author(s):  
JOEL A. MERCADO-DÍAZ ◽  
ROBERT LÜCKING ◽  
SITTIPORN PARNMEN

Two new genera and twelve new species of Graphidaceae are described from Puerto Rico. The two new genera, Borinquenotrema and Paratopeliopsis, are based on a combination of molecular sequence data and phenotype characters. Borinquenotrema, with the single new species B. soredicarpum, features rounded ascomata developing beneath and persistently covered with soralia and with an internal anatomy reminescent of Carbacanthographis; it is close to the  tribe Ocellularieae. Paratopeliopsis, including the single new species P. caraibica, resembles a miniature Topeliopsis but differs in the distinctly farinose thallus and the small, brown ascospores; it is not closely related to the latter genus but belongs in tribe Thelotremateae. The other ten new species belong in the genera Acanthotrema, Clandestinotrema, Compositrema, Fissurina, Ocellularia, and Thalloloma. Acanthotrema alboisidiatum is closely related to A. brasilianum but differs in the short, white isidia resembling insect eggs. Clandestinotrema portoricense has a unique ascospore type with a longitudinal septum only in the proximal cell. Compositrema borinquense resembles a species of Stegobolus but belongs in Compositrema based on sequence data, and is characterized by ascomata with a unique columella composed of thick, irregularly radiating strands. The second new species in this genus, C. isidiofarinosum, differs by its ecorticate, farinose thallus with scattered, corticate isidia and by its small ascomata with inconspicuous columella. The three new species of Fissurina all have 3-septate ascospores and are otherwise characterized by an isidiate thallus and stellate, orange-yellow lirellae (F. aurantiacostellata), a verrucose thallus strongly encrusted with calcium oxalate crystals and white, irregularly branched lirellae (F. crystallifera), and myriotremoid ascomata arranged in short lines (F. monilifera). Ocellularia portoricensis belongs in the core group of Ocellularia and differs from O. cavata in the white medulla and the larger ascospores becoming brown, whereas O. vulcanisorediata produces prominent soralia and immersed ascomata with apically carbonized excipulum and columella and small, transversely septate, hyaline ascospores; it is closely related to O. conformalis. Finally, Thalloloma rubromarginatum resembles T. haemographum in the brownish lirellae with bright red margin but differs from that and other species in the corticate thallus and the norstictic acid chemistry. The new combination Ampliotrema rimosum (Hale) Mercado-Díaz, Lücking & Parnmen is also proposed. Considering the current biodiversity knowledge on this family, the high level of endemism observed in other groups of organisms in the island, and the relatively high number of Graphidaceae described, it is highly likely that at least some of these new taxa are endemic to the island. This view is further supported by the unique features of several of the new species, representing novel characters in the corresponding genera.


Phytotaxa ◽  
2016 ◽  
Vol 253 (3) ◽  
pp. 179 ◽  
Author(s):  
DAN ZHU ◽  
ZONG-LONG LUO ◽  
DARBHE JAYARAMA BAHT ◽  
ERIC.H.C. MCKENZIE ◽  
ALI H. BAHKALI ◽  
...  

Helminthosporium species from submerged wood in streams in Yunnan Province, China were studied based on morphology and DNA sequence data. Descriptions and illustrations of Helminthosporium velutinum and a new species H. aquaticum are provided. A combined phylogenetic tree, based on SSU, ITS and LSU sequence data, place the species in Massarinaceae, Pleosporales. The polyphyletic nature of Helminthosporium species within Massarinaceae is shown based on ITS sequence data available in GenBank.


Phytotaxa ◽  
2018 ◽  
Vol 362 (2) ◽  
pp. 187 ◽  
Author(s):  
MING-JIE WEI ◽  
HUANG ZHANG ◽  
WEI DONG ◽  
SARANYAPHAT BOONMEE ◽  
DI ZHANG

During our ongoing investigations of freshwater fungi in Thailand, three new chaetosphaeriaceous species, Chloridium aquaticum, Chloridium aseptatum and Dictyochaeta aquatica, were found on submerged wood in freshwater habitats. To determine their placement, a phylogenetic analysis of combined LSU and ITS sequence data was performed. Chloridium aquaticum is the only species having proliferating conidiophores and holoblastic conidiogenous cell in Chloridium. A detailed description and illustrations of the taxa is provided and phylogenetic relationship between the new taxa and their relatives are compared and discussed.


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