scholarly journals Lithophyllum species from Brazilian coast: range extension of Lithophyllum margaritae and description of Lithophyllum atlanticum sp. nov. (Corallinales, Corallinophycidae, Rhodophyta)

Phytotaxa ◽  
2014 ◽  
Vol 190 (1) ◽  
pp. 355 ◽  
Author(s):  
Talita Vieira-Pinto ◽  
Mariana C. Oliveira ◽  
Janayna Bouzon ◽  
Marina Sissini ◽  
Joseph L. Richards ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Cell Walls ◽  
Molecular Data ◽  
Systematic Position ◽  
Coralline Algae ◽  
Brazilian Coast ◽  
Coast Range ◽  
Southern Brazil ◽  
Anatomical Studies ◽  
Anatomical Features

Coralline algae (Corallinophycidae, Rhodophyta) are primarily characterized by the impregnation of calcium carbonate (calcite) in their cell walls. To determine the systematic position of genera and species, researchers are increasingly combining anatomical studies with comparisons of DNA sequences. In the present study we have described the main representatives of the genus Lithophyllum in intertidal and subtidal habitats from the southern coast of Brazil based on anatomical studies, supported by molecular markers. Analyses were conducted on specimens collected from five sites along the coast of southern Brazil. Anatomical studies were carried out by light and scanning electron microscopy. Molecular studies were based on DNA barcoding markers (cox1; UPA) and SSU rDNA. Using comparative anatomical features, corroborated by the molecular data, we identified two taxonomic entities from the Brazilian coast: Lithophyllum margaritae, and we propose the new species Lithophyllum atlanticum.

Gelidium guimaraesiae sp. nov. (Gelidiaceae, Rhodophyta) from the Western Atlantic segregated from G. floridanum by morphological and molecular evidence

Phytotaxa ◽  
2019 ◽  
Vol 388 (4) ◽  
pp. 275 ◽  
Author(s):  
BEATRIZ BRUNELLI ◽  
DANIELA MILSTEIN ◽  
SUNG M. BOO ◽  
MUTUE T. FUJII
Keyword(s):  
Dna Sequences ◽  
Sequence Divergence ◽  
Molecular Data ◽  
Brazilian Coast ◽  
Molecular Evidence ◽  
Similar Species ◽  
Western Atlantic ◽  
Gelidium Floridanum ◽  
Morphological And Molecular Data ◽  
A New Species

The Gelidium species are susceptible to a great phenotypic plasticity. In this genus, studies integrating morphological and molecular data have been increasingly used to define species. To date nine Gelidium species are reported along the Brazilian coast. Gelidium floridanum is the most frequently recorded species in Brazilian but it is also often confused with morphologically similar species, especially in the field or when reproductive structures are absent. In this study we analyzed specimens from Brazil previously identified as G. floridanum based on the morphological and molecular data (cox1 and rbcL DNA sequences). Newly collected specimens from Brazil showed a DNA sequence divergence from G. floridanum in the order of 1.0–1.4% for rbcL and 4.2% for cox1, enough to be considered a new species, here described as Gelidium guimaraesiae sp. nov.

scholarly journals Sporolithon franciscanum sp. nov. (Sporolithales, Rhodophyta), a New Rhodolith-Forming Species from Northeast Brazil

Diversity ◽  
2020 ◽  
Vol 12 (5) ◽  
pp. 199 ◽  
Author(s):  
Luis Alfredo S. Leão ◽  
Ricardo G. Bahia ◽  
Michel B. Jesionek ◽  
Walter H. Adey ◽  
Gabriel Johnson ◽  
...  
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
Drainage Basin ◽  
River Mouth ◽  
Coralline Algae ◽  
Northeast Brazil ◽  
Anatomical Features ◽  
Sao Francisco River ◽  
São Francisco River ◽  
The World

This paper describes Sporolithon franciscanum, a new rhodolith-forming species of non-geniculate coralline algae found at depths between 47–52 m near the São Francisco river mouth, the second largest and the most extensive drainage basin in Brazil, and also at the Abrolhos Bank, in the world´s largest rhodolith beds. DNA sequences from plastidial psbA and rbcL markers indicate that the species is unique compared to all other Sporolithon species that have thus far been sequenced. Since morpho-anatomical features of the new species are shared with some other Sporolithon species, its identification was only confirmed by DNA sequences.

First assessment of the diversity of coralline species forming maerl and rhodoliths in Guadeloupe, Caribbean using an integrative systematic approach

Phytotaxa ◽  
2014 ◽  
Vol 190 (1) ◽  
pp. 190 ◽  
Author(s):  
Viviana Peña Freire ◽  
Florence Rousseau ◽  
Bruno De Reviers ◽  
Line Le Gall
Keyword(s):  
Systematic Approach ◽  
Molecular Data ◽  
Coralline Algae ◽  
Anatomical Features ◽  
Anatomical Data ◽  
Distinct Lineage ◽  
Reproductive Material ◽  
The Caribbean ◽  
Taxonomic Approach ◽  
Study Species

The present study documents species of coralline algae that form maerl and rhodoliths in Guadeloupe, Caribbean using an integrative systematic approach of combining molecular (COI-5P, psbA) and morphological/anatomical data. Maerl and rhodoliths were collected by SCUBA and dredging from six localities in Guadeloupe during the Karubenthos Expedition, which was coordinated by the Parc National de la Guadeloupe and the Muséum National d´Histoire Naturelle. Of the twelve maerl and rhodolith specimens collected and sequenced, eight specific entities were delimitated based on the analysis of molecular data: Lithothamnion cf. ruptile, five species of the genus Lithothamnion, one species of the genus Spongites, and the remaining one was either assigned to the genus Lithoporella or Mastophora. Morphological/anatomical data are presented for each of these species. Molecular analyses revealed that Lithothamnion. cf ruptile and other four species (Lithothamnion spp.1–4) were resolved in a distinct lineage than the other Lithothamnion species examined. Nevertheless, these five species were provisionally remained in the genus Lithothamnion based on the presence of flared epithallial cells. Previously, only three species of Lithothamnion have been cited in the Caribbean. Till this study species belonging to the genus Spongites have not been hitherto reported for this region. The specimen identified as either Lithoporella or Mastophora shared anatomical features with both genera. Further examination of reproductive material is required to identify this specimen to a lower taxonomical rank. This study is the first to report the occurrence of maerl and rhodoliths belonging to the genus Lithothamnion at 110 m depth; this record being the deepest for the genus in the Caribbean Sea. Our results have revealed that species diversity of Caribbean maerl has been underestimated and further surveys coupled with an integrative taxonomic approach on this biodiversity hotspot are necessary.

scholarly journals Visualising Silicon in Plants: Histochemistry, Silica Sculptures and Elemental Imaging

Cells ◽  
2020 ◽  
Vol 9 (4) ◽  
pp. 1066 ◽  
Author(s):  
Gea Guerriero ◽  
Ian Stokes ◽  
Nathalie Valle ◽  
Jean-Francois Hausman ◽  
Christopher Exley
Keyword(s):  
Cell Walls ◽  
Mass Spectrometry Imaging ◽  
Spatial Information ◽  
Cannabis Sativa ◽  
Essential Element ◽  
Molecular Data ◽  
Plant Vigour ◽  
X Ray ◽  
Imaging Approach ◽  
General Improvement

Silicon is a non-essential element for plants and is available in biota as silicic acid. Its presence has been associated with a general improvement of plant vigour and response to exogenous stresses. Plants accumulate silicon in their tissues as amorphous silica and cell walls are preferential sites. While several papers have been published on the mitigatory effects that silicon has on plants under stress, there has been less research on imaging silicon in plant tissues. Imaging offers important complementary results to molecular data, since it provides spatial information. Herein, the focus is on histochemistry coupled to optical microscopy, fluorescence and scanning electron microscopy of microwave acid extracted plant silica, techniques based on particle-induced X-ray emission, X-ray fluorescence spectrometry and mass spectrometry imaging (NanoSIMS). Sample preparation procedures will not be discussed in detail, as several reviews have already treated this subject extensively. We focus instead on the information that each technique provides by offering, for each imaging approach, examples from both silicifiers (giant horsetail and rice) and non-accumulators (Cannabis sativa L.).

scholarly journals Morphological and Genetic Structure of Two Equivalent Astyanax Species (Characiformes: Characidae) in the Region of Paranaíba Arc

2019 ◽  
Vol 2019 ◽  
pp. 1-8 ◽  
Author(s):  
Renan Rodrigues Rocha ◽  
Rosana de Mesquita Alves ◽  
Rubens Pasa ◽  
Karine Frehner Kavalco
Keyword(s):  
Geometric Morphometrics ◽  
River Basin ◽  
Dna Sequences ◽  
Haplotype Network ◽  
River Basins ◽  
Molecular Data ◽  
The Body ◽  
Present Species ◽  
Body Depth ◽  
Geometric Morphometric

The Astyanax scabripinnis complex is composed of a large number of almost morphological indistinguishable species, including Astyanax paranae and Astyanax rivularis, which exist in the Paraná and São Francisco Basins, respectively, and sometimes are considered subspecies of the A. scabripinnis group or even are cited just as A. scabripinnis. The two river basins are separated by the Upper Paranaíba Arc, likely the main cause of the isolation of these species. We used geometric morphometric tools and DNA analyses of populations of both species to identify the differences between them. Geometric morphometrics separated the two species into distinct groups, whose main difference was the body depth. This is generally related to the speed of the water flow in the river basins. The maximum likelihood phylogram based on mitochondrial DNA sequences formed two main clades: one composed of the population of A. rivularis and the other, of A. paranae. In the haplotype network, the species were similarly separated into two groups from the same ancestral haplotype, with A. rivularis dispersing into two lineages in the São Francisco River Basin. The distribution of A. paranae is a consequence of a secondary dispersion event in the Paraná River Basin. It forms two lineages from a haplotype derived from the ancestor. The vicariant effect of separate basins, through the elevation of the Upper Paranaíba Arc, led to the allopatric speciation of the populations originating the present species. The results of geometric morphometrics and molecular data of the fish show the importance of this geological event in the biogeography and evolutionary history of the ichthyofauna of the region and indicate that the isolation of these species seems to be effective.

Systematic status of Campydora Cobb, 1920 (Nematoda: Campydorina)

Nematology ◽  
2003 ◽  
Vol 5 (5) ◽  
pp. 699-711 ◽  
Author(s):  
Peter Mullin ◽  
Timothy Harris ◽  
Thomas Powers
Keyword(s):  
Maximum Likelihood ◽  
Ribosomal Dna ◽  
Dna Sequences ◽  
Maximum Parsimony ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Systematic Position ◽  
Nominal Species ◽  
Competing Hypotheses ◽  
Small Subunit Ribosomal Dna

AbstractThe systematic position of Campydora Cobb, 1920, which possesses many unique morphological features, especially in pharyngeal structure and stomatal armature, has long been a matter of uncertainty with the 'position of the Campydorinae' (containing only Campydora) being questionable. A review of the morphology of C. demonstrans, the only nominal species of Campydora concluded that the species warranted placement as the sole member of a monotypic suborder, Campydorina, in the order Dorylaimida. Others placed Campydorina in the order Enoplida. We conducted phylogenetic analyses, using 18s small subunit ribosomal DNA sequences generated from a number of taxa in the subclasses Enoplia and Dorylaimia, to evaluate these competing hypotheses. Although precise taxonomic placement of the genus Campydora and the identity of its closest living relatives is in need of further investigation, our analyses, under maximum parsimony, distance, and maximum likelihood criteria, unambiguously indicate that Campydora shares a common, more recent, ancestry with genera such as Alaimus, Pontonema, Tripyla and Ironus (Enoplida), rather than with any members of Dorylaimida, Mononchida or Triplonchida.

Sinalliaria, a new genus of Brassicaceae from eastern China, based on morphological and molecular data

Phytotaxa ◽  
2014 ◽  
Vol 186 (4) ◽  
pp. 188 ◽  
Author(s):  
Ying-Ying Zhou ◽  
HONG-WEI ZHANG ◽  
JIANG-QIN HU ◽  
Xiao-Feng Jin
Keyword(s):  
Dna Sequences ◽  
New Genus ◽  
Eastern China ◽  
Distinct Group ◽  
Morphological Characters ◽  
Molecular Data ◽  
New Combinations ◽  
The Family ◽  
Morphological And Molecular Data ◽  
Seed Testa

Sinalliaria is described here as a new genus of the family Brassicaceae from eastern China, based on the morphological characters and molecular sequences. Sinalliaria differs from the related genus Orychophragmus in having basal leaves petiolate, simple or rarely with 1‒3 lateral lobes (not pinnatisect); cauline leaves petiolate, cordate at base (not sessile, auriculate or amplexicaul at base); petals obovate to narrowly obovate, claw inconspicuous (not broadly obovate, with a claw as along as sepal); siliques truncate (not long-beaked) at apex. The microscopic characters of seed testa also show significant differences between Sinalliaria and Orychophragmus. Phylogenetic evidence from DNA sequences of nuclear ribosomal ITS and plastid region trnL-trnF indicates that Sinalliaria is a distinct group related to Orychophragmus and Raphanus, but these three genera do not form a clade. The new genus Sinalliaria is endemic to eastern China and has only one species and one variety. The new combinations, S. limprichtiana (Pax) X. F. Jin, Y. Y. Zhou & H. W. Zhang and S. limprichtiana var. grandifolia (Z. X. An) X. F. Jin, Y. Y. Zhou & H. W. Zhang are proposed here.

Reevaluation of the systematic position of some southern Brazilian Discocyrtus (Gonyleptidae:Roeweriinae), with the reinstatement of Bunopachylus

2021 ◽  
Author(s):  
Rafael N. Carvalho ◽  
Adriano B. Kury ◽  
Marcos R. Hara
Keyword(s):  
Phylogenetic Analysis ◽  
Maximum Parsimony ◽  
Type Species ◽  
Morphological Characters ◽  
Systematic Position ◽  
Southern Brazil ◽  
Taxonomic Changes

During a study of Discocyrtus Holmberg, 1878 and related genera, several species of alleged Pachylinae, mostly Discocyrtus, from southern Brazil were suspected of belonging in Roeweriinae. Herein, a maximum parsimony phylogenetic analysis of morphological characters was performed to test this hypothesis. Accordingly, the following taxonomic changes are herein proposed: the genus Bunopachylus Roewer, 1943 (currently in Pachylinae) is herein revalidated from synonymy with Discocyrtus, transferred to the Roeweriinae and now includes three species: B. armatissimus comb. nov. (for Discocyrtus armatissimus Roewer, 1913), B. orientalis comb. nov. (for Pachyloides orientalis Roewer, 1913) and B. occultus sp. nov. (which had been misidentified in the literature). A total of five new synonymies are proposed here: Discocyrtus milloti Roewer, 1943 = Discocyrtus coronatus Mello-Leitão, 1935 = Paradiscocyrtus trochanteralis Roewer, 1929 = Discocyrtus calcarifer Roewer, 1917 = Pachyloides orientalis Roewer, 1913, and Bunopachylus magnicalcar Roewer, 1943 (the type-species of Bunopachylus) = Discocyrtus armatissimus Roewer, 1913.

A new riparian species of Ramalina (Ramalinaceae) from Brazil, with a key to neotropical saxicolous species

2018 ◽  
Vol 50 (5) ◽  
pp. 541-553 ◽  
Author(s):  
Emerson Luiz GUMBOSKI ◽  
Sionara ELIASARO ◽  
Mayara Camila SCUR ◽  
Aline Pedroso LORENZ-LEMKE ◽  
Rosa Mara BORGES DA SILVEIRA
Keyword(s):  
New Species ◽  
Ribosomal Dna ◽  
Habitat Preference ◽  
Molecular Data ◽  
Genetic Distances ◽  
Integrative Approach ◽  
Chemical Variation ◽  
Southern Brazil ◽  
Riparian Species ◽  
High Altitude Grasslands

AbstractThe new species Ramalina fleigiae from Brazil is described growing on rocks in riverbeds in high altitude grasslands of southern Brazil. It grows in areas with constant water flow, sometimes almost immersed, and always in exposed habitats. Through an integrative approach, the detailed description of R. fleigiae includes morphological, anatomical, ecological, chemical and molecular data. Ribosomal DNA-based phylogenies suggest that R. fleigiae is more closely related to a species that shares its habitat preference (R. laevigata) than to the morphologically and chemically similar R. exiguella and R. gracilis. Ramalina fleigiae and R. laevigata can be distinguished by thallus morphology (irregularly flat branches in R. fleigiae vs. flat to canaliculate in R. laevigata) and pattern of chondroid tissue, as genetic distances between them are compatible with the interspecific range. It is possible that many species of Ramalina still remain hidden within the morphological or chemical variation of currently accepted species. Combining ecological, anatomical and molecular data will improve our future understanding of this genus.

scholarly journals Effects of light and temperature on Mg uptake, growth, and calcification in the proxy climate archive <i>Clathromorphum</i> <i>compactum</i>

2018 ◽  
Vol 15 (19) ◽  
pp. 5745-5759 ◽  
Author(s):  
Siobhan Williams ◽  
Walter Adey ◽  
Jochen Halfar ◽  
Andreas Kronz ◽  
Patrick Gagnon ◽  
...  
Keyword(s):  
Sea Ice ◽  
Cell Walls ◽  
Natural Habitat ◽  
Algal Growth ◽  
High Light ◽  
Coralline Algae ◽  
Growth Increments ◽  
Environmental Controls ◽  
Wall Calcification ◽  
Ice Conditions

Abstract. The shallow-marine benthic coralline alga Clathromorphum compactum is an important annual- to sub-annual-resolution archive of Arctic and subarctic environmental conditions, allowing reconstructions going back > 600 years. Both Mg content, in the high-Mg calcitic cell walls, and annual algal growth increments have been used as a proxy for past temperatures and sea ice conditions. The process of calcification in coralline algae has been debated widely, with no definitive conclusion about the role of light and photosynthesis in growth and calcification. Light received by algal specimens can vary with latitude, water depth, sea ice conditions, water turbidity, and shading. Furthermore, field calibration studies of Clathromorphum sp. have yielded geographically disparate correlations between MgCO3 and sea surface temperature. The influence of other environmental controls, such as light, on Mg uptake and calcification has received little attention. We present results from an 11-month mesocosm experiment in which 123 wild-collected C. compactum specimens were grown in conditions simulating their natural habitat. Specimens grown for periods of 1 and 2 months in complete darkness show that the typical complex of anatomy and cell wall calcification develops in new tissue without the presence of light, demonstrating that calcification is metabolically driven and not a side effect of photosynthesis. Also, we show that both light and temperature significantly affect MgCO3 in C. compactum cell walls. For specimens grown at low temperature (2 ∘C), the effects of light are smaller, with a 1.4 mol % MgCO3 increase from low-light (mean = 17 lx) to high-light conditions (mean = 450 lx). At higher (10 ∘C) temperature there was a 1.8 mol % MgCO3 increase from low to high light. It is therefore concluded that site- and possibly specimen-specific temperature calibrations must be applied, to account for effects of light when generating Clathromorphum-derived temperature calibrations.

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