New World direct-developing frogs (Anura: Terrarana): Molecular phylogeny, classification, biogeography, and conservation

Zootaxa ◽  
2008 ◽  
Vol 1737 (1) ◽  
pp. 1 ◽  
Author(s):  
S. BLAIR HEDGES ◽  
WILLIAM E. DUELLMAN ◽  
MATTHEW P. HEINICKE

New World frogs recently placed in a single, enormous family (Brachycephalidae) have direct development and reproduce on land, often far away from water. DNA sequences from mitochondrial and nuclear genes of 344 species were analyzed to estimate their relationships. The molecular phylogeny in turn was used as the basis for a revised classification of the group. The 882 described species are placed in a new taxon, Terrarana, and allocated to four families, four subfamilies, 24 genera, 11 subgenera, 33 species series, 56 species groups, and 11 species subgroups. Systematic accounts are provided for all taxa above the species level. Two families (Craugastoridae and Strabomantidae), three subfamilies (Holoadeninae, Phyzelaphryninae, and Strabomantinae), six genera (Bryophryne, Diasporus, Haddadus, Isodactylus, Lynchius, and Psychrophrynella), and two subgenera (Campbellius and Schwartzius) are proposed and named as new taxa, 13 subspecies are considered to be distinct species, and 613 new combinations are formed. Most of the 100 informal groups (species series, species groups, and species subgroups) are new or newly defined. Brachycephalus and Ischnocnema are placed in Brachycephalidae, a relatively small clade restricted primarily to southeastern Brazil. Eleutherodactylidae includes two subfamilies, four genera, and five subgenera and is centered in the Caribbean region. Craugastoridae contains two genera and three subgenera and is distributed mainly in Middle America. Strabomantidae is distributed primarily in the Andes of northwestern South America and includes two subfamilies, 16 genera, and three subgenera. Images and distribution maps are presented for taxa above the species level and a complete list of species is provided. Aspects of the evolution, biogeography, and conservation of Terrarana are discussed.

2019 ◽  
Vol 186 (4) ◽  
pp. 1053-1066 ◽  
Author(s):  
Valter Weijola ◽  
Varpu Vahtera ◽  
Christer Lindqvist ◽  
Fred Kraus

Abstract We provide a geographically well-sampled, time-calibrated molecular phylogeny for the Pacific monitor lizards (Varanus: subgenus Euprepiosaurus) based on ND4 and 16S rRNA mitochondrial DNA sequences. Three well-supported clades, or species groups, are retrieved: the Varanus doreanus Group, the V. jobiensis Group and the V. indicus Group. The subgenus is estimated to have originated in the Mid-Miocene, but extant lineage diversification dates from the Late Miocene and Pliocene. A rapid and widespread radiation of the V. indicus Group into the South-West Pacific islands has occurred in the Pleistocene, but colonization onto these islands did not occur in a linear, stepping-stone fashion. Genetically distinct populations – by tradition classified as V. indicus, but seemingly representing distinct species – occur scattered on Tanimbar, several of the Solomon Islands, the Admiralty Islands, the Louisiade Archipelago, Palau and Guam. Our analyses indicate that Varanus jobiensis is a species complex with several divergent lineages that started to separate in the Pliocene and continued in the Pleistocene, the former coinciding with the uplift of the Central Dividing Range on New Guinea. We find that sympatry among species of Euprepiosaurus has not occurred until divergence times of 4.7–5.8 Myr have accrued.


Zootaxa ◽  
2009 ◽  
Vol 2259 (1) ◽  
pp. 1-159 ◽  
Author(s):  
GARY A. P. GIBSON

Spalangia Latreille and Playaspalangia Yoshimoto, the only two genera classified in Spalangiinae (Chalcidoidea: Pteromalidae) are revised for the New World. Thirty-one species of Spalangia and a single species of Playaspalangia, P. rothi Yoshimoto, are recognized from the New World. One further name, Spalangia tarsalis Brèthes, is treated as a nomen dubium. European species of Spalangia not yet known from the New World are also discussed and illustrated relative to regional species, but are not treated formally. The following new synonymies are proposed: Spalangia erythromera brachyceps Bouček under Spalangia erythromera Förster n. syn., Spalangia bakeri Kieffer under Spalangia chontalensis Cameron n. syn., and Spalangia lanaiensis Ashmead under Spalangia impunctata Howard n. syn. Spalangia simplex Perkins is newly recorded from the New World and the following 13 species are described as new: Spalangia alyxia n. sp., Spalangia flavicrus n. sp., Spalangia imitator n. sp., Spalangia innuba n. sp., Spalangia leiopleura n. sp., Spalangia masneri n. sp., Spalangia nigroides n. sp., Spalangia noyesi n. sp., Spalangia plaumanni n. sp., Spalangia rugosifrons n. sp., Spalangia stictocephala n. sp., Spalangia stictocyla n. sp., and Spalangia xanthoscapa n. sp. The 2 genera and the 32 regional species of Spalangiinae are keyed, described and illustrated, and regional hosts and distributions are summarized for each species. Distribution maps document the known range of each of the species in the New World. For purposes of comparison of morphologically similar species, 7 informal species groups are recognized in Spalangia to include 29 of the 31 New World species: the attae-group (S. attae Burks, S. rugosifrons, S. stictocyla and S. stictocephala), the cameroni-group (S. cameroni Perkins, S. longepetiolata Bouček and S. gemina Bouček), the drosophilae- group (S. bethyloides Bouček, S. drosophilae Ashmead, S. flavicrus, S. impunctata, S. innuba, S. leiopleura and S. plaumanni), the endius group (S. endius Walker and S. nigripes), the nigra-group (S. alyxia, S. chontalensis, S. masneri, S. nigra Latreille, S. nigroides and S. nigroaenea Curtis), the noyesi-group (S. noyesi and S. xanthoscapa), and the subpunctata-group (S. erythromera, S. fuscipes, S. haematobiae Ashmead, S. imitator and S. subpunctata Förster).


Zootaxa ◽  
2012 ◽  
Vol 3370 (1) ◽  
pp. 1
Author(s):  
OWEN LONSDALE ◽  
STEPHEN A. MARSHALL

Sobarocephala Czerny is divided into nine newly erected species groups: the S. archisobarocephala (4 spp.), S. erwini (3spp.), S. flava (8 New World spp.; 2 Old World spp.), S. flaviseta (86 New World spp.; 1 Old World sp.), S. interrupta (86spp.), S. isla (25 spp.), S. latipennis (16 spp.), S. plumicornis (9 Old World spp.), and S. ruebsaameni (11 spp.) groups; 1species (S. setulocetra spec. nov.) remains unplaced. There are 240 species of Sobarocephala in the New World, including17 Nearctic (2 extend into the Neotropical Region) and 170 new species, some of which were previously considered va-rieties of S. humeralis Melander & Argo. The Neotropical fauna is here described, illustrated, keyed, and placed in a phy-logenetic context. Sobarocephala peruana Soós stat. nov., formerly a subspecies of S. nigronota Melander & Argo, israised to the species level, S. imitans Curran syn. nov. and S. diversipes Curran syn. nov. are synonymized with S. liturataMelander & Argo, S. annulata albiventris Soós syn. nov. is synonymized with S. annulata Melander & Argo, S. albitarsisCzerny syn. nov. is synonymized with S. humeralis, and S. pruinosa pallidor Steyskal syn. n. is synonymized with S. pru-inosa Soós. Lectotypes are designated for S. bistrigata (Kertesz) , S. lumbalis Williston, S. plumicornis Lamb and S. variegata Melander & Argo. The egg of S. uberis spec. nov. is described.


2020 ◽  
Vol 4 (6) ◽  
Author(s):  
Stephen M Baca ◽  
Andrew E Z Short

Abstract Notomicrinae (Coleoptera: Noteridae) is a subfamily of minute and ecologically diverse aquatic beetles distributed across the Southeast Asia, Oceania, and the Americas. We investigate the evolution of Notomicrinae and construct the first species-level phylogeny within Noteridae using five nuclear and mitochondrial gene fragments. We focus on the genus Notomicrus Sharp (Coleoptera: Noteridae), sampling 13 of the 17 known Notomicrus species and an additional 11 putative undescribed species. We also include Phreatodytes haibaraensis Uéno (Coleoptera: Noteridae). Datasets are analyzed in Maximum Likelihood and Bayesian frameworks. With these, we 1) estimate divergence times among notomicrine taxa and reconstruct the biogeographical history of the group, particularly testing the hypothesis of Gondwanan vicariance between Old World and New World Notomicrus; 2) additionally, we assess ecological plasticity within Notomicrinae in the context of the phylogeny; and 3) finally, we test the monophyly of tentative species groups within Notomicrus and place putative new taxa. We recover a monophyletic Notomicrinae, with Phreatodytes sister to Notomicrus. We estimate the crown age of Notomicrinae to be ca. 110 Mya. The crown age of Notomicrus is recovered as ca. 75 Mya, there diverging into reciprocally monophyletic Old and New World clades, suggesting Gondwanan vicariance. Our phylogenetic estimate indicates a strong degree of ecological plasticity within Notomicrinae, with habitat switching occurring in recently diverging taxa. Finally, we recover five main species groups in Notomicrus, one Old World, Four New World, with tentative affirmation of the placement of undescribed species.


Zootaxa ◽  
2019 ◽  
Vol 2714 (1) ◽  
pp. 1 ◽  
Author(s):  
BONNIE B. BLAIMER

The taxonomy of the Malagasy Crematogaster (Decacrema) is revised and a total of six distinct species and one species-complex are recognized. Malagasy Decacrema are widespread ants in Madagascar that nest almost exclusively arboreally, either in carton nests or inside dead twigs or branches, and often tend Coccoidea. Four species are newly described here: Crematogaster mahery sp. nov., C. malala sp. nov., C. sabatra sp. nov. and C. sisa sp. nov.. The species status of Crematogaster grevei Forel 1891 is confirmed by the study, and one described subspecies, C. hova nosibeensis Forel 1891 is raised to species level (C. nosibeensis stat. nov.) and a neotype designated. Crematogaster hova latinoda Forel 1891 is synonymised under C. hova Forel 1887, and the taxonomic status of C. hova, C. ensifera Forel 1910 and C. schencki Forel 1891 is further investigated, but could not be resolved with methods employed here. The C. hova-complex, a species-complex consisting of five morphological forms, is hence defined and the three described species above are associated with these morphotypes. Full descriptions including natural history information are presented for all species and the species-complex, as well as images, distribution maps and a species-identification key to the workers of Malagasy Decacrema. A diagnosis of the Malagasy Decacrema and identification keys to the subgenera of the ant genus Crematogaster in the Malagasy region are also provided.


ZooKeys ◽  
2020 ◽  
Vol 943 ◽  
pp. 145-155
Author(s):  
Ricardo Palacios-Aguilar ◽  
Uri Omar García-Vázquez

The genus Rhadinaea is a diverse clade of New World dipsadid snakes, with 22 species arranged in six recognized species groups. The most recently described species, Rhadinaea eduardoi, was described based on a unique specimen collected in the Santa Catarina Juquila municipality in the Sierra Madre del Sur of southern Oaxaca, Mexico. Here, based on a reexamination of the holotype and the results of a phylogenetic analysis of the holotype of Rhadinaea eduardoi and representatives of several genera closely related to Rhadinaea, we reassessed the generic assignment of Rhadinaea eduardoi. In our phylogenetic hypothesis, R. eduardoi was nested within a strongly supported clade of Coniophanes fissidens samples, thus making Rhadinaea paraphyletic with respect to Coniophanes. Additionally, our reexamination of the holotype of Rhadinaea eduardoi revealed that the alleged presence of a subpreocular scale is only true on the right side of the head, and that this scale appears to be a malformed preocular scale; also, a reduction in dorsal scale rows is present; and posterior enlarged maxillary teeth are grooved. Herein we consider that Rhadinaea eduardoi should be placed in the synonymy of Coniophanes fissidens. Consequently, we recognized only five species groups within the genus Rhadinaea.


Zootaxa ◽  
2020 ◽  
Vol 4888 (1) ◽  
pp. 1-84
Author(s):  
AUSTIN J. BAKER ◽  
JOHN M. HERATY

A key is provided to 16 recognized species groups, plus several species not assigned to species group, of Orasema Cameron (Eucharitidae), a widespread New World genus of myrmicine ant (Formicidae: Myrmicinae) parasitoids ranging from northern Argentina to southern Canada. Eight of the species groups are revised, of which five are newly established; keys are given to the species of each treated group, 22 species are newly described, and detailed life histories of several well-documented species are discussed. Revised are the Orasema coloradensis group (four species: O. coloradensis Wheeler, O. iridescens n. sp., O. scaura n. sp., and O. violacea Ashmead), the Orasema bakeri group (six species: O. bablyi n. sp., O. bakeri Gahan, O. dubitata n. sp., O. polymyrmex n. sp., O. taii Chien & Heraty, and O. texana Gahan), the Orasema tolteca group (two species: O. castilloae n. sp. and O. tolteca Mann), the Orasema sixaolae group (newly established, with four species: O. brachycephala n. sp., O. nebula n. sp., O. sixaolae Wheeler & Wheeler, and O. tinalandia n. sp.), the Orasema acuminata group (newly established, with two species: O. acuminata n. sp. and O. cerulea n. sp.), the Orasema peraltai group (newly established, with two species: O. chrysozona n. sp. and O. peraltai n. sp.), the Orasema johnsoni group (newly established, with two species: O. johnsoni n. sp. and O. spyrogaster n. sp.), and the Orasema heacoxi group (newly established, with two species: O. heacoxi n. sp. and O. masonicki n. sp.). Newly described or treated species not placed to species group are O. brasiliensis (Bréthes), O. cirrhocnemis n. sp., O. monstrosa n. sp., O. mutata n. sp., O. psarops n. sp., and O. roppai n. sp. Species concepts and relationships are based on morphology and a recently published molecular phylogeny. 


2014 ◽  
Vol 46 (3) ◽  
pp. 441-453 ◽  
Author(s):  
Christian PRINTZEN

AbstractThe lichen genus Biatora comprises inconspicuous crustose lichens that are typically found on organic substrata such as tree bark, bryophytes and detritus. During the last 20 years many new species have been added to the genus making its delimitation more and more difficult. The infrageneric relationships of the 42 species have never been investigated thoroughly. Using DNA sequences from three gene loci (ITS, RPB2, mrSSU) and 59 OTUs, an attempt was made to reconstruct the phylogenetic relationships of Biatora and its infrageneric groups. Cliostomum appears to be the closest relative of Biatora. The position of Mycobilimbia in the Lecania-clade is confirmed. Phylogenetic relationships within Biatora are poorly supported, but six different species groups that are also phenotypically distinguished are more or less well supported: the vernalis-, meiocarpa-, hertelii-, ocelliformis-, beckhausii- and rufidula- groups. The analysis also confirms the presence of several undescribed taxa. Biatora subduplex as currently circumscribed appears to be heterogeneous, as does B. helvola. Based on the phylogeny, the distributional range of B. alaskana is extended to Japan. The new combinations Biatora ementiens (Nyl.) Printzen and Biatora hemipolia (Nyl.) S. Ekman & Printzen are made and both names are typified.


PhytoKeys ◽  
2020 ◽  
Vol 169 ◽  
pp. 137-175
Author(s):  
Cassio A. P. Toledo ◽  
Vinicius Castro Souza ◽  
Eve J. Lucas

The pantropical genus Rourea Aubl. (Connaraceae) is composed of ca. 70 species, most of which occur in the Neotropics. Rourea is currently subdivided into three subgenera, with the American taxa included in Rourea subgen. Rourea. Forero (1976) recognised six sections for the species of the New World, with Rourea subgen. R. sect. Multifoliolatae being exclusive to Brazil, characterised by multifoliolate leaves, relatively small leaflets and the staminal tube (0.8–)1–1.5 mm long. Following Forero’s (1976) treatment, additional botanical collections have become available in Brazilian herbaria, allowing re-evaluation of species concepts. This work recognises and revises 12 species in this section, mainly restricted to southeastern Brazil and southern Bahia. A nomenclatural and taxonomic study of these species is here presented, including an identification key, morphological descriptions, illustrations and geographic distribution maps. A new species is also described.


Author(s):  
Bonnie B. Blaimer ◽  
Brian L. Fisher

We revise the species-level taxonomy of the Crematogaster (Crematogaster) degeeri-species-assemblage, a group of related ants occuring in Madagascar and the wider Malagasy region, and further provide an identification key to all species-groups of the genus Crematogaster in this region. Within the C. degeeri-assemblage, we recognize twelve species based upon morphological data from worker, queen and male ants, as well as genetic data from the barcode region of cytochrome oxidase I. Seven new species are described: Crematogaster alafara Blaimer sp. nov., C. bara Blaimer sp. nov., C. mafybe Blaimer sp. nov., C. maina Blaimer sp. nov., C. malahelo Blaimer sp. nov., C. masokely Blaimer sp. nov., C. ramamy Blaimer sp. nov. Crematogaster tricolor Gerstäcker, 1859 (stat. rev.) and C. dentata Dalla Torre, 1893 (stat. nov.) are raised to species level, and the following new synonymies are proposed: Crematogaster degeeri lunaris Santschi, 1928 as a synonym of C. degeeri Forel, 1886; Crematogaster sewelli improba Forel, 1907 and C. sewelli mauritiana Forel, 1907 as synonyms of C. dentata Dalla Torre, 1893, and C. pacifica Santschi, 1919 as a synonym of C. lobata Emery, 1895. Species descriptions, images, and distribution maps and identification keys based on worker ants, as well as on queen ants where available, are presented for all twelve species. In addition, we present a molecular gene tree for cytochrome oxidase I and summarize levels of sequence divergence within and between species of the C. degeeri-species-assemblage. Our findings are discussed in the light of previous work on Malagasy Crematogaster ants.


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