Quantitative Structure-Property Relationships Modeling to Predict In Vitro and In Vivo Binding of Drugs to the Bile Sequestrant, Colesevelam (Welchol)

2009 ◽  
Vol 49 (10) ◽  
pp. 1185-1195 ◽  
Author(s):  
Joseph R. Walker ◽  
Karen Brown ◽  
Shashank Rohatagi ◽  
Mohinder S. Bathala ◽  
Chao Xu ◽  
...  
2020 ◽  
Author(s):  
kegang Liu ◽  
xueya wang ◽  
Xiaochun Li-Blatter ◽  
Marc P. Wolf ◽  
Patrick Hunziker

<div>Nanomaterials are suitable for numerous applications in medicine. Building on their design versatility, they enable construction of novel targeted therapies, including personalized medicine. However, the freedom of design entails a multitude of parameters, which have to be optimized for application in nanomedicine. <br></div><div>Currently,nonamaterial assortment is mainly anecdotal, non-systematic and non-representative. In contrast to the mostly oligo-disciplinary nature of many publications, we here present a systematic and comprehensive multidisciplinary approach to chemical synthesis, physicochemical characterization, computer modeling, and in vitro and in vivo exploration of nanomaterials that may be suited for medical application. Specially, we design and synthesize a library of amphiphilic oxazoline/siloxane block co-polymers with varying chain lengths and different end groups. In this regard, the computer modeling of the current polymer library is contributing to further optimization of these nanomaterials in a fast and reliable, and efficient way. In conclusion, these outstandingly versatile and non-toxic polymers can be synthesized rapidly and easily and self-assemble to polymeric micelles in aqueous solutions, thus rendering them amenable for numerous medical diagnostic and therapeutic applications <br></div><div></div>


2020 ◽  
Author(s):  
kegang Liu ◽  
xueya wang ◽  
Xiaochun Li-Blatter ◽  
Marc P. Wolf ◽  
Patrick Hunziker

<div>Nanomaterials are suitable for numerous applications in medicine. Building on their design versatility, they enable construction of novel targeted therapies, including personalized medicine. However, the freedom of design entails a multitude of parameters, which have to be optimized for application in nanomedicine. <br></div><div>Currently,nonamaterial assortment is mainly anecdotal, non-systematic and non-representative. In contrast to the mostly oligo-disciplinary nature of many publications, we here present a systematic and comprehensive multidisciplinary approach to chemical synthesis, physicochemical characterization, computer modeling, and in vitro and in vivo exploration of nanomaterials that may be suited for medical application. Specially, we design and synthesize a library of amphiphilic oxazoline/siloxane block co-polymers with varying chain lengths and different end groups. In this regard, the computer modeling of the current polymer library is contributing to further optimization of these nanomaterials in a fast and reliable, and efficient way. In conclusion, these outstandingly versatile and non-toxic polymers can be synthesized rapidly and easily and self-assemble to polymeric micelles in aqueous solutions, thus rendering them amenable for numerous medical diagnostic and therapeutic applications <br></div><div></div>


2019 ◽  
Vol 97 (10) ◽  
pp. 1125-1132 ◽  
Author(s):  
Zahid Iqbal ◽  
Adnan Aslam ◽  
Muhammad Ishaq ◽  
Muhammad Aamir

In many applications and problems in material engineering and chemistry, it is valuable to know how irregular a given molecular structure is. Furthermore, measures of the irregularity of underlying molecular graphs could be helpful for quantitative structure property relationships and quantitative structure-activity relationships studies, and for determining and expressing chemical and physical properties, such as toxicity, resistance, and melting and boiling points. Here we explore the following three irregularity measures: the irregularity index by Albertson, the total irregularity, and the variance of vertex degrees. Using graph structural analysis and derivation, we compute the above-mentioned irregularity measures of several molecular graphs of nanotubes.


2017 ◽  
Vol 14 (7) ◽  
pp. 442 ◽  
Author(s):  
Tom M. Nolte ◽  
Willie J. G. M. Peijnenburg

Environmental contextTo aid the transition to sustainable chemistry there is a need to improve the degradability of chemicals and limit the use of organic solvents. Singlet oxygen, 1O2, is involved in organic synthesis and photochemical degradation; however, information on its aqueous-phase reactivity is limited. We developed cheminformatics models for photooxidation rate constants that will enable accurate assessment of aquatic photochemistry without experimentation. AbstractTo aid the transition to sustainable and green chemistry there is a general need to improve the degradability of chemicals and limit the use of organic solvents. In this study we developed quantitative structure–property relationships (QSPRs) for aqueous-phase photochemical reactions by singlet (a1Δg) oxygen. The bimolecular singlet oxygen reaction rate constant can be reliably estimated (R2 = 0.73 for naphtalenes and anthracenes, R2 = 0.86 for enes and R2 = 0.88 for aromatic amines) using the energy of the highest occupied molecular orbital (EHOMO). Additional molecular descriptors were used to characterise electronic and steric factors influencing the rate constant for aromatic enes (R2 = 0.74), sulfides and thiols (R2 = 0.72) and aliphatic amines. Mechanistic principles (frontier molecular orbital, perturbation and transition state theories) were applied to interpret the QSPRs developed and to corroborate findings in the literature. Depending on resonance, the speciation state (through protonation and deprotonation) can heavily influence the oxidation rate constant, which was accurately predicted. The QSPRs can be applied in synthetic photochemistry and for estimating chemical fate from photolysis or advanced water treatment.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Magnus Röding ◽  
Zheng Ma ◽  
Salvatore Torquato

Abstract Quantitative structure–property relationships are crucial for the understanding and prediction of the physical properties of complex materials. For fluid flow in porous materials, characterizing the geometry of the pore microstructure facilitates prediction of permeability, a key property that has been extensively studied in material science, geophysics and chemical engineering. In this work, we study the predictability of different structural descriptors via both linear regressions and neural networks. A large data set of 30,000 virtual, porous microstructures of different types, including both granular and continuous solid phases, is created for this end. We compute permeabilities of these structures using the lattice Boltzmann method, and characterize the pore space geometry using one-point correlation functions (porosity, specific surface), two-point surface-surface, surface-void, and void-void correlation functions, as well as the geodesic tortuosity as an implicit descriptor. Then, we study the prediction of the permeability using different combinations of these descriptors. We obtain significant improvements of performance when compared to a Kozeny-Carman regression with only lowest-order descriptors (porosity and specific surface). We find that combining all three two-point correlation functions and tortuosity provides the best prediction of permeability, with the void-void correlation function being the most informative individual descriptor. Moreover, the combination of porosity, specific surface, and geodesic tortuosity provides very good predictive performance. This shows that higher-order correlation functions are extremely useful for forming a general model for predicting physical properties of complex materials. Additionally, our results suggest that artificial neural networks are superior to the more conventional regression methods for establishing quantitative structure–property relationships. We make the data and code used publicly available to facilitate further development of permeability prediction methods.


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