Sadanagaite and subsilicic ferroan pargasite from thermally metamorphosed rocks in the Nōgō-Hakusan area, central Japan

1989 ◽  
Vol 53 (369) ◽  
pp. 99-106 ◽  
Author(s):  
Takayuki Sawaki
Keyword(s):  
High Alumina ◽  
Contact Aureole ◽  
Unit Cell Parameters ◽  
Central Japan ◽  
Cell Parameters ◽  
Basaltic Rocks ◽  
Crystalline Limestone ◽  
Facies Zone ◽  
Reaction Zones ◽  
Type Substitution

AbstractHigh-alumina subsilicic calcic amphiboles, including sadanagaite and subsilicic ferroan pargasite, are found in rock samples from the contact aureole in the Nōgō-Hakusan area, central Japan. They occur in the reaction zones between dark fragments and the surrounding crystalline limestone of the pyroxene hornfels facies zone. The dark fragments which underwent K-metasomatism are originally basaltic rocks. The sadanagaite and subsilicic ferroan pargasite have high Al2O3 (16–19 wt. %) and K2O (3.6–4.3 wt. %) contents. The Si value ranges from 5.38 to 5.64 and the total Al ranges from 3.10 to 3.43 when cation ratios are calculated on the basis of O = 23. The calculated unit cell parameters of sadanagaite are a 10.00 (1), b 18.06 (2), c 5.355 (4) Å, β 105.52(7)°, V 932(1) Å3. The A-sites of the amphiboles is occupied almost entirely by K and Na; the amphiboles are saturated with the edenite component. The amphiboles show a larger extent of tschermakite-type substitution [(Mg,Fe)Si⇌AlAl] than does ordinary pargasite. Sadanagaite is probably stable at the temperature above the upper amphibolite facies.

Aspidolite, the Na analogue of phlogopite, from Kasuga-mura, Gifu Prefecture, central Japan: description and structural data

2005 ◽  
Vol 69 (6) ◽  
pp. 1047-1057 ◽  
Author(s):  
Y. Banno ◽  
R. Miyawaki ◽  
T. Kogure ◽  
S. Matsubara ◽  
T. Kamiya ◽  
...  
Keyword(s):  
Structural Data ◽  
Miscibility Gap ◽  
Monoclinic Space Group ◽  
Contact Aureole ◽  
Central Japan ◽  
Space Group ◽  
International Mineralogical Association ◽  
Cell Parameters ◽  
Diffraction Patterns ◽  
Two Phases

AbstractAspidolite, the Na analogue of phlogopite, ideally NaMg3AlSi3O10(OH)2, occurring in hornfels from a contact aureole in Kasuga-mura, central Japan, has been approved as a mica species by the Commission on New Minerals and Mineral Names of the International Mineralogical Association. Aspidolite is interleaved with and surrounded by phlogopite. Based on its mode of occurrence, phlogopite is classified into two types; (1) phlogopite interleaved with aspidolite (= interleaved phlogopite) and (2) phlogopite rim. The aspidolite-phlogopite assemblage is associated with amphibole (pargasite-magnesiosadanagaite), titanite, calcite, scapolite, apatite, pyrrhotite and chalcopyrite. A representative chemical formula of aspidolite is (Na0.90K0.10)∑1.00(Mg2.27Al0.41Fe0.232+Ti0.05)∑2.96 (Al1.44Si2.56)∑4.00O10(OH1.97F0.03)∑2.00. Aspidolite has almost fully occupied the interlayer site; its Na/(Na+K) ratio ranges from 0.67 to 0.95. It has more tetrahedral Al (1.38—1.48 a.p.f.u. for O = 11) than the ideal aspidolite end-member showing progression of tschermakite-type substitution. The alternation of aspidolite and phlogopite parallel to the (001) plane may indicate a miscibility gap between these two phases. The phlogopite rim is interpreted as a later product, probably formed metasomatically. Aspidolite is optically biaxial negative with elongation positive and Z ‖ cleavage. Two polytypes (1M and 1A) of aspidolite were identified in X-ray powder diffraction patterns. Aspidolite-1M is monoclinic, space group C2/m, with refined unit-cell parameters a = 5.291(8), b = 9.16(2), c = 10.12(2) Å, β = 105.1(1)°, V = 473(1) Å3, Z = 2. Aspidolite-1A is triclinic, space group C1̄ , with a = 5.289(6), b = 9.16(1), c = 9.892(9) Å, α = 94.45(9), β = 97.74(9), γ = 90.0(1)°, V = 473.4(9) Å3, Z = 2.

Nifontovite and olshanskyite from Fuka, Okayama Prefecture, Japan

1994 ◽  
Vol 58 (391) ◽  
pp. 279-284 ◽  
Author(s):  
Isao Kusachi ◽  
Chiyoko Henmi
Keyword(s):  
Hydrothermal Alteration ◽  
Chemical Analyses ◽  
Calcium Borate ◽  
Unit Cell Parameters ◽  
X Ray ◽  
Cell Parameters ◽  
Crystalline Limestone ◽  
Wet Chemical ◽  
Borate Minerals ◽  
Okayama Prefecture

AbstractNifontovite and olshanskyite, two rare hydrous calcium borate minerals, have been found in crystalline limestone near gehlenite-spurrite skarns at Fuka, Okayama Prefecture. Nifontovite occurs as aggregates of tabular crystals up to 5 cm long and 1.5 cm wide, and rarely as euhedral crystals up to 1 mm long. Olshanskyite occurs as anhedral masses, or as micro-twinned platy crystals up to 1 cm long. Wet chemical analyses give the empirical formulae Ca3.052B5.991O6.038(OH)12·1.96H2O and Ca2.888B3.997(OH)18 on the basis of O = 20 for nifontovite and OH=18 for olshanskyite, respectively. The formulae are consistent with those from type localities.The X-ray powder data for these minerals were determined with accuracy. The unit cell parameters of nifontovite agree closely with those published previously. X-ray studies show that olshanskyite is triclinic with the possible space group P1̄ or P1 and a = 9.991(5), b = 14.740(11), c = 7.975(3) Å, α = 94.53(4), β = 69.08(3), γ = 112.44(5)° and Z = 3. The density 2.19 g cm−3 (meas.) obtained for olshanskyite agrees with the estimated ideal value 2.31 g cm−3 (calc.). Nifontovite was formed by hydrothermal alteration of an anhydrous borate, and olshanskyite was formed by hydrothermal alteration of nifontovite and the anhydrous borate.

Kinematical and Dynamical CBED Pattern Models: Increasing the Accuracy of the Unit-Cell Parameter Measurements Based on CBED Patterns

1990 ◽  
Vol 48 (2) ◽  
pp. 540-541
Author(s):  
I.N. Yadhikov ◽  
S.K. Maksimov
Keyword(s):  
Reciprocal Lattice ◽  
Unit Cell ◽  
Reciprocal Lattice Vector ◽  
Unit Cell Parameters ◽  
Lattice Vector ◽  
Cell Parameters ◽  
Accuracy Of Measurements ◽  
The Difference ◽  
Image Position ◽  
Convergent Beam

Convergent beam electron diffraction (CBED) is widely used as a microanalysis tool. By the relative position of HOLZ-lines (Higher Order Laue Zone) in CBED-patterns one can determine the unit cell parameters with a high accuracy up to 0.1%. For this purpose, maps of HOLZ-lines are simulated with the help of a computer so that the best matching of maps with experimental CBED-pattern should be reached. In maps, HOLZ-lines are approximated, as a rule, by straight lines. The actual HOLZ-lines, however, are different from the straights. If we decrease accelerating voltage, the difference is increased and, thus, the accuracy of the unit cell parameters determination by the method becomes lower.To improve the accuracy of measurements it is necessary to give up the HOLZ-lines substitution by the straights. According to the kinematical theory a HOLZ-line is merely a fragment of ellipse arc described by the parametric equationwith arc corresponding to change of β parameter from -90° to +90°, wherevector, h - the distance between Laue zones, g - the value of the reciprocal lattice vector, g‖ - the value of the reciprocal lattice vector projection on zero Laue zone.

Sectioned rubisco crystals in TEM

1990 ◽  
Vol 48 (3) ◽  
pp. 664-665
Author(s):  
Gunnel Karlsson ◽  
Jan-Olov Bovin ◽  
Michael Bosma
Keyword(s):  
Plant Cell ◽  
Carbon Fixation ◽  
Unit Cell ◽  
Protein Crystals ◽  
Unit Cell Parameters ◽  
Cell Parameters ◽  
Photosynthetic Carbon Fixation ◽  
Photosynthetic Carbon

RuBisCO (D-ribulose-l,5-biphosphate carboxylase/oxygenase) is the most aboundant enzyme in the plant cell and it catalyses the key carboxylation reaction of photosynthetic carbon fixation, but also the competing oxygenase reaction of photorespiation. In vitro crystallized RuBisCO has been studied earlier but this investigation concerns in vivo existance of RuBisCO crystals in anthers and leaves ofsugarbeets. For the identification of in vivo protein crystals it is important to be able to determinethe unit cell of cytochemically identified crystals in the same image. In order to obtain the best combination of optimal contrast and resolution we have studied different staining and electron accelerating voltages. It is known that embedding and sectioning can cause deformation and obscure the unit cell parameters.

Three Dimensional Structure of UMo8O26: Ordering of U-Vacancies

2002 ◽  
Vol 718 ◽  
Author(s):  
N.D. Zakharov ◽  
P. Werner
Keyword(s):  
Low Temperatures ◽  
Driving Force ◽  
Three Dimensional ◽  
Solid State Reaction Method ◽  
Dimensional Structure ◽  
Unit Cell Parameters ◽  
Cell Parameters ◽  
Selected Area Electron Diffraction ◽  
Transmission Electron ◽  
Edx Microanalysis

AbstractThe structure and composition of UMo8O26 synthesized by solid state reaction method have been investigated by High Resolution Transmission Electron Microscopy (HRTEM), Selected Area Electron Diffraction, and EDX microanalysis. The ordering of U vacancies results in considerable enlargement of unit cell parameters: an=6.44 nm, bn=1.45 nm, cn=1.6 nm. It is build up of four layers piled up in c direction. Each following layer is shifted relative to previous one by vector bn/4. Eight hexagonal tunnels in each layer are filled by U atoms, while the eight others are vacant (V). Interaction between U cations and vacancies is driving force for ordering. The variation of stoichiometry can be a reason for appearance of incommensurate modulations in these crystals. It seems plausible that this structure might also exhibit superconductivity at low temperatures.

A Crystallographic Study of Bis[S-benzyl-5-bromo-2-oxoindolin-3-ylidenemethanehydrazonthioate] Disulfide Solvated with Dimethylsulfoxide

2012 ◽  
Vol 9 (2) ◽  
pp. 87
Author(s):  
Mohd Abdul Fatah Abdul Manan ◽  
M. Ibrahim M. Tahir ◽  
Karen A. Crouse ◽  
Fiona N.-F. How ◽  
David J. Watkin
Keyword(s):  
Crystal Structure ◽  
Hydrogen Bonds ◽  
Solvent Molecule ◽  
Site Occupancy ◽  
Unit Cell Parameters ◽  
Intermolecular Hydrogen Bonds ◽  
Triclinic Space Group ◽  
Cell Parameters ◽  
Crystallographic Study ◽  
Thiol Form

The crystal structure of the title compound has been determined. The compound crystallized in the triclinic space group P -1, Z = 2, V = 1839 .42( 18) A3 and unit cell parameters a= 11. 0460( 6) A, b = 13 .3180(7) A, c=13. 7321 (8) A, a = 80.659(3 )0, b = 69 .800(3 )0 and g = 77 .007 (2)0 with one disordered dimethylsulfoxide solvent molecule with the sulfur and oxygen atoms are distributed over two sites; S101/S102 [site occupancy factors: 0.6035/0.3965] and 0130/0131 [site occupancy factor 0.3965/0.6035]. The C22-S2 l and C 19-S20 bond distances of 1. 779(7) A and 1. 788(8) A indicate that both of the molecules are connected by the disulfide bond [S20-S21 2.055(2) A] in its thiol form. The crystal structure reveals that both of the 5-bromoisatin moieties are trans with respect to the [S21-S20 and CI 9-Nl 8] and [S20-S21 and C22-N23] bonds whereas the benzyl group from the dithiocarbazate are in the cis configuration with respect to [S21-S20 and C19-S44] and [S20-S21 and C22-S36] bonds. The crystal structure is further stabilized by intermolecular hydrogen bonds of N9-H35···O16 formed between the two molecules and N28-H281 ···O130, N28-H281 ···O131 and C4 l-H4 l l ···O 131 with the solvent molecule.

Structural Study of a new Compound Based on Acid 1,4-Cyclohexanedicarboxylic (1,4-CDC)

2010 ◽  
Vol 6 (1) ◽  
pp. 891-896
Author(s):  
Manel Halouani ◽  
M. Dammak ◽  
N. Audebrand ◽  
L. Ktari
Keyword(s):  
Aqueous Solution ◽  
Water Molecules ◽  
Carboxyl Group ◽  
X Ray Diffraction ◽  
Compound I ◽  
Unit Cell Parameters ◽  
Monoclinic System ◽  
X Ray ◽  
Cell Parameters ◽  
Cyclohexanedicarboxylic Acid

One nickel 1,4-cyclohexanedicarboxylate coordination polymers, Ni2 [(O10C6H4)(COO)2].2H2O  (I), was hydrothermally synthesized from an aqueous solution of Ni (NO3)2.6H2O, (1,4-CDC) (1,4-CDC = 1,4-cyclohexanedicarboxylic acid) and tetramethylammonium nitrate. Compound (I) crystallizes in the monoclinic system with the C2/m space group. The unit cell parameters are a = 20.1160 (16) Å, b = 9.9387 (10) Å, c = 6.3672 (6) Å, β = 97.007 (3) (°), V= 1263.5 (2) (Å3) and Dx= 1.751g/cm3. The refinement converged into R= 0.036 and RW = 0.092. The structure, determined by single crystal X-ray diffraction, consists of two nickel atoms Ni (1) and Ni (2). Lots of ways of which is surrounded by six oxygen atoms, a carboxyl group and two water molecules.

On the accuracy of determining the unit cell parameters of single crystals on modern laboratory diffractometers

2021 ◽  
Vol 62 (5) ◽  
Author(s):  
П.C. Серебренникова ◽  
В.Ю. Комаров ◽  
А.С. Сухих ◽  
С.А. Громилов
Keyword(s):  
Single Crystals ◽  
Unit Cell ◽  
Unit Cell Parameters ◽  
Cell Parameters

scholarly journals Crystallization and preliminary X-ray diffraction analysis of the Csu pili CsuC–CsuA/B chaperone–major subunit pre-assembly complex fromAcinetobacter baumannii

2015 ◽  
Vol 71 (6) ◽  
pp. 770-774 ◽  
Author(s):  
Natalia Pakharukova ◽  
Minna Tuittila ◽  
Sari Paavilainen ◽  
Anton Zavialov
Keyword(s):  
Diffusion Method ◽  
X Ray Diffraction ◽  
Hanging Drop ◽  
Unit Cell Parameters ◽  
Gram Negative ◽  
X Ray ◽  
Cell Parameters ◽  
Abiotic Surfaces ◽  
Vapour Diffusion ◽  
Fimbrial Adhesins

The attachment of many Gram-negative pathogens to biotic and abiotic surfaces is mediated by fimbrial adhesins, which are assembledviathe classical, alternative and archaic chaperone–usher (CU) pathways. The archaic CU fimbrial adhesins have the widest phylogenetic distribution, yet very little is known about their structure and mechanism of assembly. To elucidate the biogenesis of archaic CU systems, structural analysis of the Csu fimbriae, which are used byAcinetobacter baumanniito form stable biofilms and cause nosocomial infection, was focused on. The major fimbriae subunit CsuA/B complexed with the CsuC chaperone was purified from the periplasm ofEscherichia colicells co-expressing CsuA/B and CsuC, and the complex was crystallized in PEG 3350 solution using the hanging-drop vapour-diffusion method. Selenomethionine-labelled CsuC–CsuA/B complex was purified and crystallized under the same conditions. The crystals diffracted to 2.40 Å resolution and belonged to the hexagonal space groupP6422, with unit-cell parametersa=b= 94.71,c = 187.05 Å, α = β = 90, γ = 120°. Initial phases were derived from a single anomalous diffraction (SAD) experiment using the selenomethionine derivative.

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