scholarly journals Identification of LMO2 transcriptome and interactome in diffuse large B-cell lymphoma

Blood ◽  
2012 ◽  
Vol 119 (23) ◽  
pp. 5478-5491 ◽  
Author(s):  
Elena Cubedo ◽  
Andrew J. Gentles ◽  
Chuanxin Huang ◽  
Yasodha Natkunam ◽  
Shruti Bhatt ◽  
...  

Abstract LMO2 regulates gene expression by facilitating the formation of multipartite DNA-binding complexes. In B cells, LMO2 is specifically up-regulated in the germinal center (GC) and is expressed in GC-derived non-Hodgkin lymphomas. LMO2 is one of the most powerful prognostic indicators in diffuse large B-cell (DLBCL) patients. However, its function in GC B cells and DLBCL is currently unknown. In this study, we characterized the LMO2 transcriptome and transcriptional complex in DLBCL cells. LMO2 regulates genes implicated in kinetochore function, chromosome assembly, and mitosis. Overexpression of LMO2 in DLBCL cell lines results in centrosome amplification. In DLBCL, the LMO2 complex contains some of the traditional partners, such as LDB1, E2A, HEB, Lyl1, ETO2, and SP1, but not TAL1 or GATA proteins. Furthermore, we identified novel LMO2 interacting partners: ELK1, nuclear factor of activated T-cells (NFATc1), and lymphoid enhancer-binding factor1 (LEF1) proteins. Reporter assays revealed that LMO2 increases transcriptional activity of NFATc1 and decreases transcriptional activity of LEF1 proteins. Overall, our studies identified a novel LMO2 transcriptome and interactome in DLBCL and provides a platform for future elucidation of LMO2 function in GC B cells and DLBCL pathogenesis.

Blood ◽  
2012 ◽  
Vol 120 (21) ◽  
pp. 1284-1284
Author(s):  
Carol Y Ying ◽  
David Dominguez-Sola ◽  
Melissa Fabi ◽  
Ivo C Lorenz ◽  
Mukesh Bansal ◽  
...  

Abstract Abstract 1284 Diffuse large B-cell lymphoma (DLBCL) and Follicular Lymphoma (FL) are the most common forms of non-Hodgkin's lymphoma in the adult, accounting for approximately 75% of lymphoma diagnoses. Recent technological advances, including whole-genome DNA and RNA sequencing and gene copy-number analysis, have provided a comprehensive view of the genomic landscape of DLBCL, allowing new insights in the somatic genetic lesions that are associated with the pathogenesis of this malignancy. Among the genetic alterations that are recurrently found in DLBCL and FL, but remain of unclear functional significance, are the mutations involving the MEF2B gene. MEF2B is a member of the myocyte enhancer-binding factor 2 (MEF2) family of transcription factors whose activity is dependent on association with specific co-repressors (including CABIN1 and HDACs) and co-activators in response to multiple signaling pathways. Overall, ∼11% of DLBCL and ∼12% of FL cases reported carry mutations in MEF2B (Morin Nature 2011; Pasqualucci Nat Genet 2011; Lohr PNAS 2012). We showed that within the mature B-cell lineage, MEF2B expression is restricted to germinal center (GC) B-cells. The analysis of the B-cell interactome, a network of protein-protein and protein-DNA interactions generated by reverse-engineering a large dataset of B-cell phenotypes, showed that MEF2B was uniquely connected to BCL6, a proto-oncogene and well-characterized master regulator of the GC reaction. We demonstrated that MEF2B directly binds to the promoter of BCL6 and leads to its trans-activation in GC B-cells. Consistently, silencing of MEF2B in GC-derived lymphoma cell lines led to BCL6 down-regulation and impairment of cell cycle progression and proliferation, suggesting that normal and malignant GC cells are dependent on MEF2B expression. Approximately 80% of the DLBCL and FL mutated cases carry missense mutations clustered in the N-terminal conserved MADS-box and MEF2 functional domains, suggesting that they may have a relevant impact on MEF2B function. In a second group of cases (∼20%), mutations affect the C-terminal half of the MEF2B protein, and are mostly represented by frameshift and nonsense mutations, which truncate or modify the C-terminus of the protein. In order to functionally characterize these mutations, we first investigated whether DLBCL- and FL-associated MEF2B mutations affected the ability to regulate the transcription of BCL6. Using a reporter construct containing the native BCL6 promoter region responsive to MEF2B, we demonstrated that most of the N-terminal mutations cause increased transcriptional activity as tested on the BCL6 promoter. The analysis of the N-terminal MEF2B crystal structure, upon mapping the mutated residues, predicted that these mutations may interfere with the ability of MEF2B to heterodimerize with the CABIN1 co-repressor. Indeed, we showed that these MEF2B mutant proteins fail to bind CABIN1 and are resistant to its transrepressive activity. Conversely, C-terminal MEF2B mutations lead to truncated MEF2B proteins lacking the domains responsive to two independent post-transcriptional modifications, namely PKA-mediated phosphorylation and sumoylation. We showed that MEF2B is in fact phosphorylated by PKA and sumoylated in vivo, that both of these modifications lead to negative regulation of MEF2B transcriptional activity, and that lymphoma-associated C-terminal mutants fail to be negatively regulated by PKA-mediated phosphorylation and sumoylation. In summary, these results identify MEF2B as an upstream regulator of BCL6 and GC formation, which is required for lymphoma proliferation. Lymphoma-associated MEF2B mutations may contribute to lymphomagenesis, at least in part, by deregulating the expression of the BCL6 oncogene. Thus, targeting MEF2B may represent an alternative therapeutic approach to block BCL6 and cell proliferation in DLBCL and FL. Disclosures: No relevant conflicts of interest to declare.


Haematologica ◽  
2016 ◽  
Vol 102 (3) ◽  
pp. 573-583 ◽  
Author(s):  
Martine van Keimpema ◽  
Leonie J. Grüneberg ◽  
Esther J.M. Schilder-Tol ◽  
Monique E.C.M. Oud ◽  
Esther A. Beuling ◽  
...  

Blood ◽  
2015 ◽  
Vol 126 (23) ◽  
pp. 4761-4761
Author(s):  
Anna Misyurina ◽  
Vsevolod Andreevich Misyurin ◽  
Andrey Vitalievich Misyurin ◽  
Sergey Kirillovich Kravchenko ◽  
Alla M. Kovrigina ◽  
...  

Abstract Introduction. MYC increases proliferative capacity of malignant B-cells, independently from mechanisms led to increased protein expression. Tumors with solely MYC expression are highly effective curable with doses intensification. Ability of cells to escape apoptosis by several mechanisms like BCL2 or P53 соехpression promotes malignant B-cells growth and survival and represents a big therapeutic problem. Aim. To investigate mechanism of MYC hyperexpression in absence of c-MYC -rearrangement in DLBCL (diffuse large B-cell lymphoma). To analyze efficacy of intensive chemotherapy in pts with DLBCL who underwent modified NHL-BFM-90 (m-NHL-BFM-90) plus rituximab (R) in correspondence with MYC and BCL2 protein expression. Patients and methods. Data of 62 DLBCL pts (35 males and 27 females) who underwent m-NHL-BFM-90+R in National Research Center for Hematology (Moscow) between 2004 and 2013 years were analyzed. Tumor samples were stained with antibody to BCL2 (clone 124, Dako) and MYC (clone Y69, Epitomics). We used a previously reported cut off for MYC expression ≥40% and BCL2 ≥50% (N. Johnson et al., 2012). G-banding data were available in 19 pts. In one case was revealed c-MYC rearrangement into heavy chain locus t(8;14)(q24;q32). In all other cases FISH didn't reveal c-MYC orBCL2 rearrangements with DNA probes Vysis LSI MYC Dual color, Break Apart Rearrangement Probe, Vysis LSI BCL2 Dual color, Break Apart Rearrangement Probe. RQ-PCR was performed in 17 cases to estimate mRNA level of c-MYC expression relatively to ABL. To assess relation between mRNA of c-MYC and MYC protein expression was used correlation analysis (R²). To estimate treatment results were performed Kaplan-Meyer and Cox regression analyses (SAS 9.3). Results: Majority of pts - 48/62 (78%) attended to a high-risk group according IPI (3-5). 9/62 (14,5%) patients had MYC+/BCL2- tumors, 15 (24%) - "double-expressor" (DE) MYC+/BCL2+, 21 (34%) - MYC-/BCL2+, 17 (27,5%) - MYC-/BCL2-. Median age of DE pts was statistically higher than others (61 (25-73) vs 47 (15-73) years old, P<0,05). In case with t(8;14)(q24;q32) MYC protein expression was ≥40%. In 18/50 (36 %) cases in absence of c-MYC -rearrangement MYC protein expression was ≥40%. In 27/43 (63 %) cases in absence of BCL2 rearrangement BCL2 expression was ≥50%. Median level c-MYC mRNA-expression was 1748 % (492 % - 5408 %). There was a tendency to increase MYC expression level with rising quantity of c-MYC mRNA (R2 = 0,13, P = 0,08). In case with t(8;14)(q24;q32) c-MYC mRNA level was higher than median (3940 %). 45 (78%) of pts achieved a complete remission, 4 from them had second remission. Relapses and progression of DLBCL developed in 9 (15%) and 7 (11%) pts. 5 (8%) pts died because of other reasons. DE DLBCL pts had the highest risk of relapse or progression within 4 years: MYC+/BCL2- - 14%, MYC-/BCL2 - 14%, MYC+/BCL2+ - 65%, MYC-/BCL2+ - 24% (P=0,02). In multivariate analysis MYC/BCL2 double expression had an independent prognostic power (HR 4,717, P=0, 0024) from IPI. Conclusion. We illustrated that MYC protein expression level correlates with c-MYC transcriptional activity in absence of c-MYC rearrangement. MYC hyperexpression alone didn't influence on prognosis, only coexpression of MYC and BCL2 had a crucial role increasing probability of relapse or progression in DLBCL patients. Disclosures No relevant conflicts of interest to declare.


Hemato ◽  
2021 ◽  
Vol 2 (2) ◽  
pp. 281-304
Author(s):  
Laura Tomas-Roca ◽  
Marta Rodriguez ◽  
Ruth Alonso-Alonso ◽  
Socorro M. Rodriguez-Pinilla ◽  
Miguel Angel Piris

Diffuse large B-cell lymphomas (DLBCL)s, the most common type of Non-Hodgkin’s Lymphoma, constitute a heterogeneous group of disorders including different disease sites, strikingly diverse molecular features and a profound variability in the clinical behavior. Molecular studies and clinical trials have partially revealed the underlying causes for this variability and have made possible the recognition of some molecular variants susceptible of specific therapeutic approaches. The main histogenetic groups include the germinal center, activated B cells, thymic B cells and terminally differentiated B cells, a basic scheme where the large majority of DLBCL cases can be ascribed. The nodal/extranodal origin, specific mutational changes and microenvironment peculiarities provide additional layers of complexity. Here, we summarize the status of the knowledge and make some specific proposals for addressing the future development of targeted therapy for DLBC cases.


2021 ◽  
Vol 27 (3) ◽  
pp. S404-S405
Author(s):  
Caron A. Jacobson ◽  
Frederick L. Locke ◽  
Armin Ghobadi ◽  
David B. Miklos ◽  
Lazaros J. Lekakis ◽  
...  

2017 ◽  
Vol 10 (2) ◽  
pp. 508-514 ◽  
Author(s):  
Yukiko Nishi ◽  
Riko Kitazawa ◽  
Ryuma Haraguchi ◽  
Ayaka Ouchi ◽  
Yasuo Ueda ◽  
...  

Primary extranodal malignant lymphoma of the thyroid is a rare entity composed of mostly neoplastic transformation of germinal center-like B cells (GCB) or memory B cells. Other B-cell-type malignancies arising primarily in the thyroid have rarely been described. Immunohistochemical examination of autopsied primary malignant lymphoma of the thyroid in an 83-year-old Japanese female revealed the presence of a non-GCB subtype of diffuse large B-cell lymphoma (DLBCL) without the typical codon 206 or 265 missense mutation of MYD88. The lack of the highly oncogenic MYD88 gene mutation, frequently observed in DLBCL of the activated B-cell (ABC) subtype, and the detection of an extremely aggressive yet local clinical phenotype demonstrated that the present case was an exceptional entity of the type3 (non-GCB and non-ABC) subtype.


Blood ◽  
2009 ◽  
Vol 114 (20) ◽  
pp. 4503-4506 ◽  
Author(s):  
Anja Mottok ◽  
Christoph Renné ◽  
Marc Seifert ◽  
Elsie Oppermann ◽  
Wolf Bechstein ◽  
...  

Abstract STATs are constitutively activated in several malignancies. In primary mediastinal large B-cell lymphoma and Hodgkin lymphoma (HL), inactivating mutations in SOCS1, an inhibitor of JAK/STAT signaling, contribute to deregulated STAT activity. Based on indications that the SOCS1 mutations are caused by the B cell–specific somatic hypermutation (SHM) process, we analyzed B-cell non-HL and normal B cells for mutations in SOCS1. One-fourth of diffuse large B-cell lymphoma and follicular lymphomas carried SOCS1 mutations, which were preferentially targeted to SHM hotspot motifs and frequently obviously inactivating. Rare mutations were observed in Burkitt lymphoma, plasmacytoma, and mantle cell lymphoma but not in tumors of a non–B-cell origin. Mutations in single-sorted germinal center B cells were infrequent relative to other genes mutated as byproducts of normal SHM, indicating that SOCS1 inactivation in primary mediastinal large B-cell lymphoma, HL, diffuse large B-cell lymphoma, and follicular lymphoma is frequently the result of aberrant SHM.


2020 ◽  
Vol 10 (3) ◽  
pp. 446-453
Author(s):  
Wei Peng ◽  
Meizuo Zhong ◽  
Youhong Tang

Ubiquitin-specific protease 9X (USP9X) is crucial in the diagnosis and treatment of many tumor types, but its role in Diffuse Large B Cell Lymphoma (DLBCL) has not been determined. The current study aimed to examine the effects of RNA interference on USP9X expression, and subsequently on the bioactivity of DLBCL Farage and Pfeiffer cells. There were two groups in the study: USP9X-siRNA and NC. USP9X siRNA was transiently transferred into DLBCL cells by Cationic liposome. The total RNA was extracted using Fe2O3 and was retrieved into the DNA using the MagBeads Total RNA Extraction Kit. The protein expression of USP9X in Farage, Pfeiffer, and normal human B cell line at the cellular level was observed by Western blot. The Farage and Pfeiffer cells were infected with USP9X-siRNA. Cell apoptosis and cell growth viability were analyzed by flow cytometry and CCK8, Mcl-1 protein, a potential target of USP9X, and apoptosis factor proteins (such as Bak, Cytochrome C, Caspase 3, Caspase 8, PARP) were detected by Western blot after siRNA interference. The results showed that the protein expression of USP9X in malignant B cells was four times higher than that of the normal B cells. Inhibition of USP9X reduced the Mcl-1 activity, and increased the caspase-3, Bak and Cytochrome C activity. In the malignant B cells, Mcl-1 and Bak were binding in vivo; Bak was a new partner of Mcl-1. Inhibition of USP9X reduced cell proliferation and increased apoptosis. The expression of USP9X is upregulated in Diffuse large B cell lymphoma cells, Farage, and Pfeiffer. Inhibition expression of USP9X may induce cell apoptosis, inhibit cell growth, and downregulate Mcl-1 protein expression in Diffuse large B cell lymphoma cells, Farage, and Pfeiffer. USP9X has the ability in regulating cell apoptosis.


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