scholarly journals A Fully Automated Measurement of Total Metabolic Tumor Burden in Diffuse Large B-Cell Lymphoma and Follicular Lymphoma

Blood ◽  
2019 ◽  
Vol 134 (Supplement_1) ◽  
pp. 4666-4666
Author(s):  
Skander Jemaa ◽  
Jill Fredrickson ◽  
Alexandre Coimbra ◽  
Richard AD Carano ◽  
Tarec Christoffer C. El-Galaly ◽  
...  

Introduction: Baseline total metabolic tumor volume (TMTV) from FDG-PET/CT scans has been shown to be prognostic for progression-free survival (PFS) in diffuse large B-cell lymphoma (DLBCL; Kostakoglu et al. Blood 2017) and follicular lymphoma (FL; Meignan et al. J Clin Oncol 2016). Fully automated TMTV measurements could increase reproducibility and enable results in real-time after a PET/CT scan. Although numerous methods for tumor segmentation on FDG PET images are published, they typically involve a manual step to identify a point within each tumor, performed by a trained reader, followed by semi-automatic identification of the tumor margins. To allow for rapid segmentation of whole body metabolic tumor burden, we developed a fully automated approach based on deep learning algorithms. Methods: An image processing pipeline was developed using FDG-PET/CT images from two large Phase III, multicenter trials, in first-line (1L) DLBCL (GOYA, NCT01287741, n=1418) and FL (GALLIUM, NCT01332968, n=1401). FDG-PET/CT scans were acquired according to a standardized imaging charter using a range of scanner models. Images were automatically preprocessed and used as inputs to cascaded 2D and region-specific 3D convolutional neural networks. The resulting tumor masks were then used for feature extraction. For simplicity, our prognostic analysis is limited to three variables: TMTV, number of identified lesions, and bulky disease (longest tumor diameter >7.5cm). For tumor segmentation, neural networks were trained on 2,266 scans from 1,133 patients in GOYA, and tested (out-of-sample) on 1,064 scans from 532 patients with evaluable baseline and end-of-treatment scans in GALLIUM. Manually directed, semi-automated tumor masks reviewed by board certified radiologists were used as ground truth for both training and testing. Based on the extracted tumor information, prognostic analyses for PFS were conducted on 1,139 evaluable pretreatment PET/CT scans from GOYA, and 541 patients from GALLIUM. Kaplan-Meier methodology was used for survival analysis, and a Cox proportional hazards (CPH) model was used for multivariate analysis. Results: From the out-of-sample validation step, the Dice Similarity Coefficient for the segmented tumor burden was 0.886, while the voxelwise sensitivity was 0.926. The lesion-level correlation between extracted and measured TMTV was 0.987. For PFS in the 1L DLBCL trial (GOYA), our calculated patient-level TMTV quartiles closely replicate the prognostic results of the semi-automated analysis reported by Kostakoglu et al. (Fig 1A, Table 1). A high lesion count above Q3 (>12 lesions [Fig 1B]) and bulky disease were also prognostic for PFS. To evaluate the prognostic value of the derived metrics, a simple risk score (RS) was constructed by considering the quantity: RS-DLBCL = 𝟙(TMTV >330ml) + 𝟙(nr. lesions ≥12) + 𝟙(bulky disease >1), where 𝟙(.) denotes the indicator function and 330ml is the median TMTV in GOYA. Multivariate CPH analysis verified the unique contribution of RS-DLBCL (p<0.0005) when added to the International Prognostic Index (IPI) score (p<0.01); derived from the multivariate model, the estimated HRs for RS-DLBCL are given in Table 2. In the 1L FL trial (GALLIUM), baseline TMTV >510mL was prognostic for PFS (HR, 1.59; p<0.013; Fig 1C). A high lesion count above Q3 (>18 lesions) and bulky disease (Fig 1D) were also prognostic. Three-year PFS for patients with TMTV <510mL was 85.1% (81.3-89.1%), while for TMTV >510mL, it was 77.3% (71.3-83.7%). A RS for 1L FL was defined similarly as for DLBCL: RS-FL = 𝟙(TMTV >510ml) + 𝟙(nr. lesions >18) + 𝟙(bulky disease). RS-FL (p<0.034) was significant when added to a CPH model with FLIPI (p<0.024). Estimated HRs for RS-FL after adjusting for FLIPI are given in Table 2. Conclusion: We present a novel approach for a fully automated whole body metabolic tumor burden segmentation on FDG-PET/CT scans for non-Hodgkin lymphoma patients. This method allows for the extraction of a range of tumor burden features from FDG-PET/CT. For example, TMTV, number of lesions, and bulky disease-features shown to be prognostic for PFS-in addition to known factors such as IPI/FLIPI. Our method is fast and produces a complete pt-level assessment in <5mins. Further development including clinical and biomarker covariates, and considering organ involvement, may yield better prognostic performance to identify pts who are likely to progress within 1-2 years. Disclosures Jemaa: Genentech, Inc./F. Hoffmann-La Roche Ltd: Employment. Fredrickson:Genentech, Inc.: Employment; F. Hoffmann-La Roche Ltd: Equity Ownership. Coimbra:Genentech, Inc.: Employment. Carano:Genentech, Inc.: Employment; F. Hoffmann-La Roche Ltd: Equity Ownership. El-Galaly:Takeda: Other: Travel support; Roche: Employment, Other: Travel support. Knapp:F. Hoffmann-La Roche Ltd: Employment. Nielsen:F. Hoffmann-La Roche Ltd: Employment, Equity Ownership. Sahin:F. Hoffmann-La Roche Ltd: Employment, Equity Ownership. Bengtsson:Genentech, Inc.: Employment; F. Hoffmann-La Roche Ltd: Equity Ownership. de Crespigny:Genentech, Inc.: Employment; F. Hoffmann-La Roche Ltd: Equity Ownership.

2020 ◽  
Vol 33 (4) ◽  
pp. 888-894 ◽  
Author(s):  
Skander Jemaa ◽  
Jill Fredrickson ◽  
Richard A. D. Carano ◽  
Tina Nielsen ◽  
Alex de Crespigny ◽  
...  

Abstract 18F-Fluorodeoxyglucose-positron emission tomography (FDG-PET) is commonly used in clinical practice and clinical drug development to identify and quantify metabolically active tumors. Manual or computer-assisted tumor segmentation in FDG-PET images is a common way to assess tumor burden, such approaches are both labor intensive and may suffer from high inter-reader variability. We propose an end-to-end method leveraging 2D and 3D convolutional neural networks to rapidly identify and segment tumors and to extract metabolic information in eyes to thighs (whole body) FDG-PET/CT scans. The developed architecture is computationally efficient and devised to accommodate the size of whole-body scans, the extreme imbalance between tumor burden and the volume of healthy tissue, and the heterogeneous nature of the input images. Our dataset consists of a total of 3664 eyes to thighs FDG-PET/CT scans, from multi-site clinical trials in patients with non-Hodgkin’s lymphoma (NHL) and advanced non-small cell lung cancer (NSCLC). Tumors were segmented and reviewed by board-certified radiologists. We report a mean 3D Dice score of 88.6% on an NHL hold-out set of 1124 scans and a 93% sensitivity on 274 NSCLC hold-out scans. The method is a potential tool for radiologists to rapidly assess eyes to thighs FDG-avid tumor burden.


Head & Neck ◽  
2015 ◽  
Vol 38 (S1) ◽  
pp. E600-E606 ◽  
Author(s):  
Ronan Abgral ◽  
Gérald Valette ◽  
Philippe Robin ◽  
Jean Rousset ◽  
Nathalie Keromnes ◽  
...  

2015 ◽  
Vol 33 (15_suppl) ◽  
pp. e19107-e19107
Author(s):  
Wenzhao Zhong ◽  
Qing-yi Hou ◽  
Qi-bin Chen ◽  
Xue-ning Yang ◽  
Ning Zhao ◽  
...  

PLoS ONE ◽  
2015 ◽  
Vol 10 (12) ◽  
pp. e0143305 ◽  
Author(s):  
Johannes Salamon ◽  
László Papp ◽  
Zoltán Tóth ◽  
Azien Laqmani ◽  
Ivayla Apostolova ◽  
...  

2010 ◽  
Vol 49 (04) ◽  
pp. 129-137 ◽  
Author(s):  
B. J. Krause ◽  
S. M. Eschmann ◽  
K. U. Juergens ◽  
H. Kuehl ◽  
A. C. Pfannenberg ◽  
...  

Summary Aim: This study had three major objectives: 1.) to record the number of concordant (both in PET and CT) pathological lesions in different body regions/organs, 2.) to evaluate the image quality and 3.) to determine both, the quantity and the quality of artefacts in whole body FDG PET/CT scans. Patients, methods: Routine whole body scans of 353 patients referred to FDG-PET/ CT exams at 4 university hospitals were employed. All potentially malignant lesions in 13 different body regions/organs were classified as either concordant or suspicious in FDG-PET or CT only. In the latter case the diagnostic relevance of this disparity was judged. The image quality in PET and CT was rated as a whole and separately in 5 different body regions. Furthermore we investigated the frequency and site of artefacts caused by metal implants and oral or intravenous contrast media as well as the subjective co-registration quality (in 4 body regions) and the diagnostic impact of such artefacts or misalignment. In addition, the readers rated the diagnostic gain of adding the information from the other tomographic method. Results: In total 1941 lesions (5.5 per patient) were identified, 1094 (56%) out of which were concordant. 602 (71%) out of the 847 remaining lesions were detected only with CT, 245 (29%) were only PET-positive. As expected, CT particularly depicted the majority of lesions in the lungs and abdominal organs. However, the diagnostic relevance was greater with PET-only positive lesions. Most of the PET/CT scans were performed with full diagnostic CT including administration of oral and intravenous contrast media (> 80%). The image quality in PET and CT was rated excellent. Artefacts occurred in more than 60% of the scans and were mainly due to (dental) metal implants and contrast agent. Nevertheless there was almost no impact on diagnostic confidence if reading of the non attenuation corrected PET was included. The co-registration quality in general was also rated as excellent. Misalignment mostly occurred due to patient motion and breathing and led to diagnostic challenges in about 4% of all exams. The diagnostic gain of adding PET to a CT investigation was rated higher than vice versa. Conclusions: As the image quality in both PET and CT was more than satisfying, CT-artefacts almost never led to diagnostic uncertainties and serious misalignment rarely occurred, PET/CT can be considered as suitable for routine use and may replace single PET- and CT-scans. However, additional reading of the non attenuation corrected PET is mandatory to assure best possible diagnostic confidence in PET. Since approximately half of all lesions found in PET/CT were not concordant, at least in a setting with a diagnostic CT the exams need to be reported by both a nuclear medicine physician and a radiologist in consensus.


2017 ◽  
Vol 44 (13) ◽  
pp. 2169-2178 ◽  
Author(s):  
Paula Lapa ◽  
Bárbara Oliveiros ◽  
Margarida Marques ◽  
Jorge Isidoro ◽  
Filipe Caseiro Alves ◽  
...  

2014 ◽  
Vol 4 (6) ◽  
pp. 825-831
Author(s):  
Frederic Sampedro ◽  
Anna Domenech ◽  
Sergio Escalera
Keyword(s):  
Fdg Pet ◽  
Ct Scans ◽  
Pet Ct ◽  

Sign in / Sign up

Export Citation Format

Share Document