scholarly journals Complete genome and comparative analysis of Streptococcus gallolyticus subsp. gallolyticus, an emerging pathogen of infective endocarditis

BMC Genomics ◽  
2011 ◽  
Vol 12 (1) ◽  
Author(s):  
Dennis Hinse ◽  
Tanja Vollmer ◽  
Christian Rückert ◽  
Jochen Blom ◽  
Jörn Kalinowski ◽  
...  
Author(s):  
Yanis Tamzali ◽  
Clément Danthu ◽  
Alexandra Aubry ◽  
Jean-François Faucher ◽  
Zhour El Ouafi ◽  
...  

Purpose: Kidney Transplant Recipients (KTRs) tend to develop infections with characteristic epidemiology, presentation and outcome. While infective endocarditis (IE) is among such complications in KTRs, literature is scarce. We describe the presentation, epidemiology, and factors associated with IE in KTRs. Methods: We performed a retrospective case/control study which included patients from two centers. First episodes of definite or possible IE (Duke criteria), in adult KTRs from January 2007 to December 2018 were included, as well as two controls per case, and followed until December 31 2019. Clinical, biological, and microbiological data and the outcome were collected. Survival was studied using the Kaplan-Meier method. Finally, we searched for factors associated with the onset of IE in KTRs by the comparison of cases and controls. Results: Seventeen cases and 34 controls were included. IE was diagnosed after a mean delay of 78 months after KT, mostly on native valves of the left heart only. Pathogens of digestive origin were most frequently involved (six Enterococcus spp, three Streptococcus gallolyticus and one Escherichia coli), followed by Staphylococci (three cases of S. aureus and S. epidermidis each). Among the risk factors evaluated only age was significantly associated with the occurrence of IE in our study (63.8 years for cases vs. 55.6 years for controls, P=0.03) Patient and death-censored graft survival were greatly diminished five years after IE compared to controls being 50.3% vs. 80.6% (p<0.003) and 29.7% vs. 87.5% (p<0.002), respectively. Conclusion: IE in KTRs is a disease that carries significant risks both for the survival of the patient and the transplant.


2021 ◽  
Vol 7 (11) ◽  
Author(s):  
Janine T. Bossé ◽  
Yanwen Li ◽  
Liza Miriam Cohen ◽  
Marc Stegger ◽  
Øystein Angen ◽  
...  

We report here the complete genome sequence of the widely studied Actinobacillus pleuropneumoniae serovar 8 reference strain 405, generated using the Pacific Biosciences (PacBio) RS II platform. Furthermore, we compared draft sequences generated by Illumina sequencing of six stocks of this strain, including the same original stock used to generate the PacBio sequence, held in different countries and found little genetic variation, with only three SNPs identified, all within the degS gene. However, sequences of two small plasmids, pARD3079 and p405tetH, detected by Illumina sequencing of the draft genomes were not identified in the PacBio sequence of the reference strain.


2003 ◽  
Vol 5 (7) ◽  
pp. 630-630 ◽  
Author(s):  
K. E. Nelson ◽  
C. Weinel ◽  
I. T. Paulsen ◽  
R. J. Dodson ◽  
H. Hilbert ◽  
...  

2014 ◽  
Vol 88 (4) ◽  
pp. 474-477 ◽  
Author(s):  
Takaaki NEMOTO ◽  
Hiroyuki KUNISHIMA ◽  
Masanori HIROSE ◽  
Yukitaka YAMASAKI ◽  
Keito TORIKAI ◽  
...  

2020 ◽  
Vol 9 (30) ◽  
Author(s):  
K. E. Cherny ◽  
E. A. Ozer ◽  
T. J. Kochan ◽  
L. K. Kociolek

ABSTRACT We report the complete genome sequence of Clostridium innocuum ATCC 14501, which was isolated in 1962 from an appendiceal abscess. At that time, the isolated strain was designated C. innocuum, given its suspected lack of virulence, but recent reports suggest that C. innocuum is an emerging pathogen.


2012 ◽  
Vol 194 (23) ◽  
pp. 6680-6680 ◽  
Author(s):  
Guangjun Gao ◽  
Jing Li ◽  
Tiefeng Li ◽  
Zhengfang Zhang ◽  
Liping Wang ◽  
...  

ABSTRACTBrucella canisinfects several species of animals, and canine is the preferred host. Genome sequences of strains from different hosts are valuable for comparative analysis of host adaptation and microevolution. Here, we report the genome sequence ofBrucella canisstrain 118, a strain isolated from canine.


BIOPHYSICS ◽  
2006 ◽  
Vol 51 (4) ◽  
pp. 587-591
Author(s):  
N. J. Mulder ◽  
W. Fleischmann ◽  
A. Kanapin ◽  
R. Apweiler

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