scholarly journals Erratum to: Genomic organization and alternative splicing of the human and mouse RPTPρ genes: Correction

BMC Genomics ◽  
2001 ◽  
Vol 2 (1) ◽  
Author(s):  
Julie A Besco ◽  
Adrienne Frostholm ◽  
Magdalena C Popesco ◽  
Arthur HM Burghes ◽  
Andrej Rotter
BMC Genomics ◽  
2001 ◽  
Vol 2 (1) ◽  
Author(s):  
Julie A Besco ◽  
Adrienne Frostholm ◽  
Magdalena C Popesco ◽  
Arthur HM Burghes ◽  
Andrej Rotter

2003 ◽  
Vol 55 (3) ◽  
pp. 200-212 ◽  
Author(s):  
Saidi A. Mohiddin ◽  
Shajia Lu ◽  
John-Paul Cardoso ◽  
Stefanie Carroll ◽  
Sanjaya Jha ◽  
...  

2009 ◽  
Vol 2009 ◽  
pp. 1-6 ◽  
Author(s):  
David Talavera ◽  
Modesto Orozco ◽  
Xavier de la Cruz

Functional modification of transcription regulators may lead to developmental changes and phenotypical differences between species. In this work, we study the influence of alternative splicing on transcription factors in human and mouse. Our results show that the impact of alternative splicing on transcription factors is similar in both species, meaning that the ways to increase variability should also be similar. However, when looking at the expression patterns of transcription factors, we observe that they tend to diverge regardless of the role of alternative splicing. Finally, we hypothesise that transcription regulation of alternatively spliced transcription factors could play an important role in the phenotypical differences between species, without discarding other phenomena or functional families.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Motoaki Yanaizu ◽  
Chika Washizu ◽  
Nobuyuki Nukina ◽  
Jun-ichi Satoh ◽  
Yoshihiro Kino

Abstract Genetic variations of TREM2 have been implicated as a risk factor of Alzheimer’s disease (AD). Recent studies suggest that the loss of TREM2 function compromises microglial responses to the accumulation of amyloid beta. Previously, we found that exon 3 of TREM2 is an alternative exon whose skipping leads to a reduction in full-length TREM2 protein by inducing nonsense-mediated mRNA decay. Here, we aimed to identify factors regulating TREM2 splicing. Using a panel of RNA-binding proteins, we found that exon 3 skipping of TREM2 was promoted by two paralogous proteins, CELF1 and CELF2, which were both linked previously with risk loci of AD. Although the overexpression of both CELF1 and CELF2 enhanced exon 3 skipping, only CELF2 reduced the expression of full-length TREM2 protein. Notably, the TREM2 ortholog in the green monkey, but not in the mouse, showed alternative splicing of exon 3 like human TREM2. Similarly, splicing regulation of exon 3 by CELF1/2 was found to be common to humans and monkeys. Using chimeric minigenes of human and mouse TREM2, we mapped a CELF-responsive sequence within intron 3 of human TREM2. Collectively, our results revealed a novel regulatory factor of TREM2 expression and highlighted a species-dependent difference of its regulation.


2009 ◽  
Vol 37 (Database) ◽  
pp. D305-D309 ◽  
Author(s):  
M. Shionyu ◽  
A. Yamaguchi ◽  
K. Shinoda ◽  
K.-i. Takahashi ◽  
M. Go

1996 ◽  
Vol 271 (23) ◽  
pp. 13407-13416 ◽  
Author(s):  
Marian E. Durkin ◽  
Medha Gautam ◽  
Frosty Loechel ◽  
Joshua R. Sanes ◽  
John P. Merlie ◽  
...  

DNA Research ◽  
2006 ◽  
Vol 13 (5) ◽  
pp. 229-243 ◽  
Author(s):  
Seung-Jae Noh ◽  
Kyooyeol Lee ◽  
Hyojung Paik ◽  
Cheol-Goo Hur

Genomics ◽  
2008 ◽  
Vol 92 (5) ◽  
pp. 279-291 ◽  
Author(s):  
Hanna Vihma ◽  
Priit Pruunsild ◽  
Tõnis Timmusk

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