scholarly journals Lymphocyte–monocyte–neutrophil index: a predictor of severity of coronavirus disease 2019 patients produced by sparse principal component analysis

2021 ◽  
Vol 18 (1) ◽  
Author(s):  
Yingjie Qi ◽  
Jian-an Jia ◽  
Huiming Li ◽  
Nagen Wan ◽  
Shuqin Zhang ◽  
...  

Abstract Background It is important to recognize the coronavirus disease 2019 (COVID-19) patients in severe conditions from moderate ones, thus more effective predictors should be developed. Methods Clinical indicators of COVID-19 patients from two independent cohorts (Training data: Hefei Cohort, 82 patients; Validation data: Nanchang Cohort, 169 patients) were retrospected. Sparse principal component analysis (SPCA) using Hefei Cohort was performed and prediction models were deduced. Prediction results were evaluated by receiver operator characteristic curve and decision curve analysis (DCA) in above two cohorts. Results SPCA using Hefei Cohort revealed that the first 13 principal components (PCs) account for 80.8% of the total variance of original data. The PC1 and PC12 were significantly associated with disease severity with odds ratio of 4.049 and 3.318, respectively. They were used to construct prediction model, named Model-A. In disease severity prediction, Model-A gave the best prediction efficiency with area under curve (AUC) of 0.867 and 0.835 in Hefei and Nanchang Cohort, respectively. Model-A’s simplified version, named as LMN index, gave comparable prediction efficiency as classical clinical markers with AUC of 0.837 and 0.800 in training and validation cohort, respectively. According to DCA, Model-A gave slightly better performance than others and LMN index showed similar performance as albumin or neutrophil-to-lymphocyte ratio. Conclusions Prediction models produced by SPCA showed robust disease severity prediction efficiency for COVID-19 patients and have the potential for clinical application.

Author(s):  
Pengpeng Cheng ◽  
Daoling Chen ◽  
Jianping Wang

AbstractIn order to improve the efficiency and accuracy of thermal and moisture comfort prediction of underwear, a new prediction model is designed by using principal component analysis method to reduce the dimension of related variables and eliminate the multi-collinearity relationship between variables, and then inputting the converted variables into genetic algorithm (GA) and BP neural network. In order to avoid the problems of slow convergence speed and easy falling into local minimum of Back Propagation (BP) neural network, this paper adopted GA to optimize the weights and thresholds of BP neural network, and utilized MATLAB software to program, and established the prediction models of BP neural network and GA–BP neural network. To verify the superiority of the model, the predicted result of GA–BP, PCA–BP and BP are compared with GA–BP neural network. The results show that PCA could improve the accuracy and adaptability of GA–BP neural network for thermal and moisture comfort prediction. PCA–GA–BP model is obviously superior to GA–BP, PCA–BP, BP, SVM and K-means prediction models, which could accurately predict thermal and moisture comfort of underwear. The model has better accuracy prediction and simpler structure.


2006 ◽  
Vol 1 (1) ◽  
Author(s):  
K. Katayama ◽  
K. Kimijima ◽  
O. Yamanaka ◽  
A. Nagaiwa ◽  
Y. Ono

This paper proposes a method of stormwater inflow prediction using radar rainfall data as the input of the prediction model constructed by system identification. The aim of the proposal is to construct a compact system by reducing the dimension of the input data. In this paper, Principal Component Analysis (PCA), which is widely used as a statistical method for data analysis and compression, is applied to pre-processing radar rainfall data. Then we evaluate the proposed method using the radar rainfall data and the inflow data acquired in a certain combined sewer system. This study reveals that a few principal components of radar rainfall data can be appropriate as the input variables to storm water inflow prediction model. Consequently, we have established a procedure for the stormwater prediction method using a few principal components of radar rainfall data.


2015 ◽  
Vol 50 (8) ◽  
pp. 649-657 ◽  
Author(s):  
Regina Maria Villas Bôas de Campos Leite ◽  
Maria Cristina Neves de Oliveira

Abstract:The objective of this work was to evaluate the suitability of the multivariate method of principal component analysis (PCA) using the GGE biplot software for grouping sunflower genotypes for their reaction to Alternaria leaf spot disease (Alternariaster helianthi), and for their yield and oil content. Sixty-nine genotypes were evaluated for disease severity in the field, at the R3 growth stage, in seven growing seasons, in Londrina, in the state of Paraná, Brazil, using a diagrammatic scale developed for this disease. Yield and oil content were also evaluated. Data were standardized using the software Statistica, and GGE biplot was used for PCA and graphical display of data. The first two principal components explained 77.9% of the total variation. According to the polygonal biplot using the first two principal components and three response variables, the genotypes were divided into seven sectors. Genotypes located on sectors 1 and 2 showed high yield and high oil content, respectively, and those located on sector 7 showed tolerance to the disease and high yield, despite the high disease severity. The principal component analysis using GGE biplot is an efficient method for grouping sunflower genotypes based on the studied variables.


2018 ◽  
Vol 166 ◽  
pp. 1-16 ◽  
Author(s):  
Kuangnan Fang ◽  
Xinyan Fan ◽  
Qingzhao Zhang ◽  
Shuangge Ma

Sign in / Sign up

Export Citation Format

Share Document