Biochemistry of Some Beneficial Traits

2013 ◽  
pp. 177-186
Keyword(s):  
Inventions ◽  
2021 ◽  
Vol 6 (3) ◽  
pp. 52
Author(s):  
Rajan Kapoor ◽  
Aniruddha Datta ◽  
Michael Thomson

Conventional breeding approaches that focus on yield under highly favorable nutrient conditions have resulted in reduced genetic and trait diversity in crops. Under the growing threat from climate change, the mining of novel genes in more resilient varieties can help dramatically improve trait improvement efforts. In this work, we propose the use of the joint graphical lasso for discovering genes responsible for desired phenotypic traits. We prove its efficiency by using gene expression data for wild type and delayed flowering mutants for the model plant. Arabidopsis thaliana shows that it recovers the mutation causing genes LNK1 and LNK2. Some novel interactions of these genes were also predicted. Observing the network level changes between two phenotypes can also help develop meaningful biological hypotheses regarding the novel functions of these genes. Now that this data analysis strategy has been validated in a model plant, it can be extended to crop plants to help identify the key genes for beneficial traits for crop improvement.


Author(s):  
Gerard Terradas ◽  
Anita Hermann ◽  
Anthony A James ◽  
William McGinnis ◽  
Ethan Bier

Abstract Gene drives are programmable genetic elements that can spread beneficial traits into wild populations to aid in vector-borne pathogen control. Two different drives have been developed for population modification of mosquito vectors. The Reckh drive (vasa-Cas9) in Anopheles stephensi displays efficient allelic conversion through males but generates frequent drive-resistant mutant alleles when passed through females. In contrast, the AgNos-Cd1 drive (nos-Cas9) in An. gambiae achieves almost complete allelic conversion through both genders. Here, we examined the subcellular localization of RNA transcripts in the mosquito germline. In both transgenic lines, Cas9 is strictly co-expressed with endogenous genes in stem and pre-meiotic cells of the testes, where both drives display highly efficient conversion. However, we observed distinct co-localization patterns for the two drives in female reproductive tissues. These studies suggest potential determinants underlying efficient drive through the female germline. We also evaluated expression patterns of alternative germline genes for future gene-drive designs.


2017 ◽  
Vol 284 (1868) ◽  
pp. 20171751 ◽  
Author(s):  
Gillian L. Vale ◽  
Emma G. Flynn ◽  
Jeremy Kendal ◽  
Bruce Rawlings ◽  
Lydia M. Hopper ◽  
...  

Various non-human animal species have been shown to exhibit behavioural traditions. Importantly, this research has been guided by what we know of human culture, and the question of whether animal cultures may be homologous or analogous to our own culture. In this paper, we assess whether models of human cultural transmission are relevant to understanding biological fundamentals by investigating whether accounts of human payoff-biased social learning are relevant to chimpanzees ( Pan troglodytes ). We submitted 4- and 5-year-old children ( N = 90) and captive chimpanzees ( N = 69) to a token–reward exchange task. The results revealed different forms of payoff-biased learning across species and contexts. Specifically, following personal and social exposure to different tokens, children's exchange behaviour was consistent with proportional imitation, where choice is affected by both prior personally acquired and socially demonstrated token–reward information. However, when the socially derived information regarding token value was novel, children's behaviour was consistent with proportional observation; paying attention to socially derived information and ignoring their prior personal experience. By contrast, chimpanzees' token choice was governed by their own prior experience only, with no effect of social demonstration on token choice, conforming to proportional reservation. We also find evidence for individual- and group-level differences in behaviour in both species. Despite the difference in payoff strategies used, both chimpanzees and children adopted beneficial traits when available. However, the strategies of the children are expected to be the most beneficial in promoting flexible behaviour by enabling existing behaviours to be updated or replaced with new and often superior ones.


Author(s):  
Cassandria Tay Fernandez ◽  
Jacob Marsh ◽  
Mônica Furaste Danilevicz ◽  
Clémentine Mercé ◽  
David Edwards

Abstract This chapter discusses the application of pangenomics for molecular breeding of wheat. Pangenomes can be used by both researchers and breeders alike to develop elite wheat cultivars through the discovery and integration of genetic variations associated with agronomically beneficial traits. By providing a reference that accommodates for variation in individuals, variants whose presence and/or absence control abiotic stress resistance and yield can be identified. This tool has only become more informative as more wheat varieties are sequenced, new sequencing approaches such as long-read sequencing and genome mapping are utilized, and tools for pangenomic analysis are developed. With pangenomics, variable genes from wild wheat relatives and related species can be used to optimize wheat molecular breeding and develop improved varieties tailored for the changing global environment.


2019 ◽  
Vol 2 (1) ◽  
Author(s):  
Lukas R. Dahlin ◽  
Alida T. Gerritsen ◽  
Calvin A. Henard ◽  
Stefanie Van Wychen ◽  
Jeffrey G. Linger ◽  
...  

Abstract Microalgae are promising biocatalysts for applications in sustainable fuel, food, and chemical production. Here, we describe culture collection screening, down-selection, and development of a high-productivity, halophilic, thermotolerant microalga, Picochlorum renovo. This microalga displays a rapid growth rate and high diel biomass productivity (34 g m−2 day−1), with a composition well-suited for downstream processing. P. renovo exhibits broad salinity tolerance (growth at 107.5 g L−1 salinity) and thermotolerance (growth up to 40 °C), beneficial traits for outdoor cultivation. We report complete genome sequencing and analysis, and genetic tool development suitable for expression of transgenes inserted into the nuclear or chloroplast genomes. We further evaluate mechanisms of halotolerance via comparative transcriptomics, identifying novel genes differentially regulated in response to high salinity cultivation. These findings will enable basic science inquiries into control mechanisms governing Picochlorum biology and lay the foundation for development of a microalga with industrially relevant traits as a model photobiology platform.


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