scholarly journals Genetic variation and phylogeography of the Triatoma dimidiata complex evidence a potential center of origin and recent divergence of haplogroups having differential Trypanosoma cruzi and DTU infections

2019 ◽  
Vol 13 (1) ◽  
pp. e0007044 ◽  
Author(s):  
Angélica Pech-May ◽  
Carlos Jesús Mazariegos-Hidalgo ◽  
Amaia Izeta-Alberdi ◽  
Sury Antonio López-Cancino ◽  
Ezequiel Tun-Ku ◽  
...  
2006 ◽  
Vol 96 (9) ◽  
pp. 941-950 ◽  
Author(s):  
Pascal L. Zaffarano ◽  
Bruce A. McDonald ◽  
Marcello Zala ◽  
Celeste C. Linde

A total of 1,366 Rhynchosporium secalis isolates causing scald on barley, rye, and wild barley (Hordeum spontaneum) were assayed for restriction fragment length polymorphism loci, DNA fingerprints, and mating type, to characterize global genetic structure. The isolates originated from 31 field populations on five continents. Hierarchical analysis revealed that more than 70% of the total genetic variation within regions was distributed within a barley field. At the global level, only 58% of the total genetic variation was distributed within fields, while 11% was distributed among fields within regions, and 31% was distributed among regions. A significant correlation was found between genetic and geographic distance. These findings suggest that gene flow is common at the local level while it is low between regions on the same continent, and rare between continents. Analyses of multilocus associations, genotype diversity, and mating type frequencies indicate that sexual recombination is occurring in most of the populations. We found the highest allele richness in Scandinavia followed by Switzerland. This suggests that R. secalis may not have originated at the center of origin of barley, the Fertile Crescent, nor in a secondary center of diversity of barley, Ethiopia.


PLoS ONE ◽  
2013 ◽  
Vol 8 (2) ◽  
pp. e56198 ◽  
Author(s):  
Dawn M. Roellig ◽  
Mason Y. Savage ◽  
A. Wendy Fujita ◽  
Christian Barnabé ◽  
Michel Tibayrenc ◽  
...  

2018 ◽  
Vol 62 ◽  
pp. 151-159 ◽  
Author(s):  
Joseph P. Gallant ◽  
Raquel Asunción Lima-Cordón ◽  
Silvia A. Justi ◽  
Maria Carlota Monroy ◽  
Toni Viola ◽  
...  

2009 ◽  
Vol 37 (Database) ◽  
pp. D544-D549 ◽  
Author(s):  
A. A. Ackermann ◽  
S. J. Carmona ◽  
F. Aguero

2012 ◽  
Vol 12 (8) ◽  
pp. 1743-1750 ◽  
Author(s):  
Juan David Ramírez ◽  
María Clara Duque ◽  
Marleny Montilla ◽  
Zulma M. Cucunubá ◽  
Felipe Guhl

2000 ◽  
Author(s):  
Graham A.E. Gall ◽  
Gideon Hulata ◽  
Eric M. Hallerman ◽  
Bernard May ◽  
Umiel Nakdimon

Five stocks of tilapia [oreochromis niloticus (on), red O. niloticus (ROn), O. aureus (Oa), O. mossambicus (Om), and Sarotherodon galilaeus (Sg)] were used to produce two-way (F1), three-way (3WC) and four-way crosses (4WC). Three 4WC groups, containing equal representation of all four species, formed the base population for a new synthetic stock, called an "artificial center of origin" (ACO). Four genomic maps were created using microsatellite and AFLP markers, two from a 3WC family [Om female and (Oa x ROn) male] and two from a 4WC family [(Om x Oas) females and (Sg x On) male]. Sixty-two loci segregating from the female parent of the 3WC mapped to 14 linkage groups while 214 loci from the male parent mapped to 24 linkage groups. Similarly, 131 loci segregating from the female parent of the 4WC mapped to 26 linkage groups and 118 loci from the male parent mapped to 25 linkage groups. Preliminary screening of an F2 and a 4WC family identified a number of loci associated with cold tolerance and body weight. These loci were clustered in a few linkage groups, suggesting they may be indicative of quantitative trait loci.


PLoS Genetics ◽  
2020 ◽  
Vol 16 (12) ◽  
pp. e1009170
Author(s):  
Philipp Schwabl ◽  
Jalil Maiguashca Sánchez ◽  
Jaime A. Costales ◽  
Sofía Ocaña-Mayorga ◽  
Maikell Segovia ◽  
...  

Analysis of genetic polymorphism is a powerful tool for epidemiological surveillance and research. Powerful inference from pathogen genetic variation, however, is often restrained by limited access to representative target DNA, especially in the study of obligate parasitic species for which ex vivo culture is resource-intensive or bias-prone. Modern sequence capture methods enable pathogen genetic variation to be analyzed directly from host/vector material but are often too complex and expensive for resource-poor settings where infectious diseases prevail. This study proposes a simple, cost-effective ‘genome-wide locus sequence typing’ (GLST) tool based on massive parallel amplification of information hotspots throughout the target pathogen genome. The multiplexed polymerase chain reaction amplifies hundreds of different, user-defined genetic targets in a single reaction tube, and subsequent agarose gel-based clean-up and barcoding completes library preparation at under 4 USD per sample. Our study generates a flexible GLST primer panel design workflow for Trypanosoma cruzi, the parasitic agent of Chagas disease. We successfully apply our 203-target GLST panel to direct, culture-free metagenomic extracts from triatomine vectors containing a minimum of 3.69 pg/μl T. cruzi DNA and further elaborate on method performance by sequencing GLST libraries from T. cruzi reference clones representing discrete typing units (DTUs) TcI, TcIII, TcIV, TcV and TcVI. The 780 SNP sites we identify in the sample set repeatably distinguish parasites infecting sympatric vectors and detect correlations between genetic and geographic distances at regional (< 150 km) as well as continental scales. The markers also clearly separate TcI, TcIII, TcIV and TcV + TcVI and appear to distinguish multiclonal infections within TcI. We discuss the advantages, limitations and prospects of our method across a spectrum of epidemiological research.


2005 ◽  
Vol 19 (2) ◽  
pp. 281-284 ◽  
Author(s):  
João Batista F. da Silva ◽  
Charles R. Clement

The geographical distribution and morpho-genetic variation of wild and domesticated populations of a crop species are essential information for identifying a center of origin. The pejibaye (Bactris gasipaes Kunth) is the only domesticated neotropical palm, whose starchy-oily fruits are subsistence products and whose heart-of-palm is an expanding agribusiness. The origin of pejibaye is unresolved, but probably will be found in the distribution of type 1 B. gasipaes var. chichagui in southwestern Amazonia. A new area of occurrence of this type is reported around São Felix do Xingu, Pará, Brazil, 52°41' W 6°34' S, about 600 km northeast of the eastern-most known population, in central Mato Grosso, Brazil. The plants of this population are slightly less robust than other type 1 plants and have small fruit bunches (60-70 fruit), small fruit (0.45 g and 10 by 9 mm) and seed (0.23 g and 6.5 by 7.4 mm), all smaller than previous descriptions. Although this find is disjunct from earlier reports, it is unlikely that other populations are absent between it and central Mato Grosso, expanding type 1 var. chichagui's distribution by 30% and redefining it as a typical element of the transition between humid and semi-humid forests across southern Amazonia, rather than an Andean element expanding into the region.


2002 ◽  
Vol 4 (5) ◽  
pp. 1-16 ◽  
Author(s):  
Andréa M. Macedo ◽  
Riva P. Oliveira ◽  
Sérgio D.J. Pena

Chagas disease, caused by the parasite protozoan Trypanosoma cruzi, is characterised by a variable clinical course, from symptomless cases to severe chronic disease with cardiac and/or gastrointestinal involvement. This variability has been attributed both to differences in the host response and to genomic heterogeneity of the parasite. This article reviews the evidence in favour of an important role of the genetic constitution of T. cruzi in determining the clinical characteristics of Chagas disease and discusses the basis of the ‘Clonal-Histotropic Model’ for the pathogenesis of this disease.


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