Transcriptome and Metabolite Insights into Domestication Process of Cultivated Barley in China

The domestication process of cultivated barley in China remains under debate because of the controversial origins of barley. Here, we analyzed transcriptomic and non-targeted metabolic data from 29 accessions together with public resequencing data from 124 accessions to explore the domestication process of cultivated barley in China (Cb-C). These analyses revealed that both Cb-C and Tibetan wild barley (Wb-T) were the descendants of wild barley from the Near East Fertile Crescent (Wb-NE), yielding little support for a local origin of Wb-T. Wb-T was more likely an intermediate in the domestication process from Wb-NE to Cb-C. Wb-T contributed more genetically to Cb-C than Wb-NE, and was domesticated into Cb-C about 3300 years ago. These results together seem to support that Wb-T may be a feralized or hybrid form of cultivated barley from the Near East Fertile Crescent or central Asia. Additionally, the metabolite analysis revealed divergent metabolites of alkaloids and phenylpropanoids and these metabolites were specifically targeted for selection in the evolutionary stages from Wb-NE to Wb-T and from Wb-T to Cb-C. The key missense SNPs in the genes HORVU6Hr1G027650 and HORVU4Hr1G072150 might be responsible for the divergence of metabolites of alkaloids and phenylpropanoids during domestication. Our findings allow for a better understanding of the domestication process of cultivated barley in China.

Spanish Spelt Wheat: From an Endangered Genetic Resource to a Trendy Crop

Spelt wheat (Triticum aestivum L. ssp. spelta Thell.) is an ancient wheat that was widely cultivated in the past. This species derived from a cross between emmer wheat (T. turgidum spp. dicoccum Schrank em. Thell.) and Aegilops tauschii Coss. Its main origin was in the Fertile Crescent (Near East), with a secondary center of origin in Europe due to a second hybridization event between emmer and hexaploid wheat. This species has been neglected in most of Europe; however, the desire for more natural foods has driven a revival in interest. Iberian spelt is classified as a geographical group differing to the rest of European spelt. In this review, the particularities, genetic diversity and current situation of Spanish spelt, mainly for quality traits, are discussed.

The Genetic Landscape of Fiber Flax

Genetic diversity in a breeding program is essential to overcome modern-day environmental challenges faced by humanity and produce robust, resilient crop cultivars with improved agronomic characteristics, as well as to trace crop domestication history. Flax (Linum usitatissimum), one of the first crops domesticated by mankind, has been traditionally cultivated for fiber as well as for medicinal purposes and as a nutritional product. The origins of fiber flax are hidden in the mists of time and can be hypothetically traced back to either the Indo-Afghan region or Fertile Crescent. To shed new light on fiber flax genetic diversity and breeding history, in this study, we presented a comprehensive analysis of the core collection of flax (306 accessions) of different morphotypes and geographic origins maintained by the Russian Federal Research Center for Bast Fiber Crops. We observed significant population differentiation between oilseed and fiber morphotypes, as well as mapped genomic regions affected by recent breeding efforts. We also sought to unravel the origins of kryazhs, Russian heritage landraces, and their genetic relatedness to modern fiber flax cultivars. For the first time, our results provide strong genetic evidence in favor of the hypothesis on kryazh’s mixed origin from both the Indo-Afghan diversity center and Fertile Crescent. Finally, we showed predominant contribution from Russian landraces and kryazhs into the ancestry of modern fiber flax varieties. Taken together, these findings may have practical implications on the development of new improved flax varieties with desirable traits that give farmers greater choice in crop management and meet the aspirations of breeders.

Mitochondrial DNA haplogroup study: residents of Sulaymaniyah city in the Iraqi Kurdistan Region may be genetically closer to European lineage

Background Being the native inhabitants of the Neolithic Fertile Crescent, Kurds were included in several maternal lineage studies concerning the Eurasian population. However, no study was performed on the Kurdish population of Sulaymaniyah city (latitude 33.314690 and longitude 44.376759). This study was carried out on a sample of Sorani Kurds living in Sulaymaniyah for the identification of population-related single nucleotide polymorphisms (SNPs) and modes of maternal lineage. Results In this study, 36 randomly selected healthy unrelated Kurdish subjects were enrolled. Whole mitochondrial DNA sequencing was performed. HaploGrep 2.0 and neutrality test (Tajima’s D) were employed for haplogroup identification and historical demography determination. When the outcomes were compared with previous studies in Kurds and the neighbouring nations, the identified haplogroups in the sample of study were members of the Western Eurasian haplogroups with a predominance of haplogroup H. Conclusions The whole mitochondrial DNA sequence is superior to the traditional analysis of the non-coding (control) region. Our study indicates a stronger relation of the studied group to the European lineage than to their neighbouring nations.

Planetary Cities: Fluid Rock Foundations of Civilization

Whereas recent framings of planetary urbanization stress the planet-scaled impacts of contemporary urban processes, we might also conceive of cities as being constitutively ‘planetary’ from their very outset. This article looks at two ways in which the earliest urban centres or ‘civilizations’ on the floodplains of the Fertile Crescent harnessed the deep, geological forces of the Earth. The first is the tapping and channelling of sedimentary processes, central to what Wittfogel referred to as hydraulic civilizations (1963). The second is the use of high-heat technologies to smelt and forge metals, which can be construed as a capture of igneous processes. What both sets of practices have in common is that they involve skilled intervention in fluid-solid phase transitions between solid rock and flowing particulate matter. Viewing cities as constitutively geological or planetary in this way can help us reimagine the challenges posed to urban spaces by looming transformations in Earth systems.

​Effects of Microbial Fertilizer and Vermicompost Applications on the Yield and Yield Related Parameters of Broad Bean (Vicia faba L.) under Eastern Mediterranean Highland Agroclimatic Conditions

Background: This study was conducted to determine the effects of microbial fertilizer and vermicompost applications on the yield and yield related parameters of broad beans (Vicia faba L.) under zero chemical fertilizer applied conditions. Trial area was a highland remote to sea under Mediterranean climate in South Eastern Anatolia of Turkey. It is located in fertile crescent and 180 km away to Karacadag Mountains (Diyarbakir) where Einkorn wheat (Aegilops monococcum L.) was first cultivated in history approximately ten thousand years ago. The broad bean was also among the founder crops of the Near East including the trial location. Methods: Rhizobium leguminosarum inoculant were used as microbial fertilizer in the experiments. Applied vermicompost doses were 0, 400, 800 and 1200 kg ha-1. The trials was conducted for two years and replicated thrice in a randomized block deign. Conclusion: Application of vermicompost was found significantly effective on the plant height, first pod height, number of pods per plant, number of seeds per pod, 100 grain weight and grain yield. Aapplication of 800 kg ha-1 and 120 kg ha-1 vermicompost along with Rhizobium leguminosarum inoculation was found superior for grain yield.

Chromosome-scale assembly of wild barley accession ‘OUH602’

Barley (Hordeum vulgare) was domesticated from its wild ancestral form ca. 10,000 years ago in the Fertile Crescent and is widely cultivated throughout the world, except for in tropical areas. The genome size of both cultivated barley and its conspecific wild ancestor is approximately 5 Gb. High-quality chromosome-level assemblies of 19 cultivated and one wild barley genotype were recently established by pan-genome analysis. Here, we release another equivalent short-read assembly of the wild barley accession ‘OUH602’. A series of genetic and genomic resources were developed for this genotype in prior studies. Our assembly contains more than 4.4 Gb of sequence, with a scaffold N50 value of over 10 Mb. The haplotype shows high collinearity with the most recently updated barley reference genome, ‘Morex’ V3, with some inversions. Gene projections based on ‘Morex’ gene models revealed 46,807 protein-coding sequences and 43,375 protein coding genes. Alignments to publicly available sequences of bacterial artificial chromosome (BAC) clones of ‘OUH602’ confirm the high accuracy of the assembly. Since more loci of interest have been identified in ‘OUH602’, the release of this assembly, with detailed genomic information, should accelerate gene identification and the utilization of this key wild barley accession.