scholarly journals Polymorphisms in DNA-Repair Genes in a Cohort of Prostate Cancer Patients from Different Areas in Spain: Heterogeneity between Populations as a Confounding Factor in Association Studies

PLoS ONE ◽  
2013 ◽  
Vol 8 (7) ◽  
pp. e69735 ◽  
Author(s):  
Luis Alberto Henríquez-Hernández ◽  
Almudena Valenciano ◽  
Palmira Foro-Arnalot ◽  
María Jesús Álvarez-Cubero ◽  
José Manuel Cozar ◽  
...  
2016 ◽  
Vol 114 (8) ◽  
pp. 945-952 ◽  
Author(s):  
Edward J Saunders ◽  
◽  
Tokhir Dadaev ◽  
Daniel A Leongamornlert ◽  
Ali Amin Al Olama ◽  
...  

Abstract Background: Germline mutations within DNA-repair genes are implicated in susceptibility to multiple forms of cancer. For prostate cancer (PrCa), rare mutations in BRCA2 and BRCA1 give rise to moderately elevated risk, whereas two of ∼100 common, low-penetrance PrCa susceptibility variants identified so far by genome-wide association studies implicate RAD51B and RAD23B. Methods: Genotype data from the iCOGS array were imputed to the 1000 genomes phase 3 reference panel for 21 780 PrCa cases and 21 727 controls from the Prostate Cancer Association Group to Investigate Cancer Associated Alterations in the Genome (PRACTICAL) consortium. We subsequently performed single variant, gene and pathway-level analyses using 81 303 SNPs within 20 Kb of a panel of 179 DNA-repair genes. Results: Single SNP analyses identified only the previously reported association with RAD51B. Gene-level analyses using the SKAT-C test from the SNP-set (Sequence) Kernel Association Test (SKAT) identified a significant association with PrCa for MSH5. Pathway-level analyses suggested a possible role for the translesion synthesis pathway in PrCa risk and Homologous recombination/Fanconi Anaemia pathway for PrCa aggressiveness, even though after adjustment for multiple testing these did not remain significant. Conclusions: MSH5 is a novel candidate gene warranting additional follow-up as a prospective PrCa-risk locus. MSH5 has previously been reported as a pleiotropic susceptibility locus for lung, colorectal and serous ovarian cancers.


2018 ◽  
Vol 199 (4S) ◽  
Author(s):  
H. Ballentine Carter ◽  
Mufaddal Mamawala ◽  
Tricia Landis ◽  
Kathleen Wiley ◽  
Isaacs William B. ◽  
...  

2019 ◽  
Vol 120 (8) ◽  
pp. 867-867
Author(s):  
Martina Mijuskovic ◽  
Edward J. Saunders ◽  
Daniel A. Leongamornlert ◽  
Sarah Wakerell ◽  
Ian Whitmore ◽  
...  

2021 ◽  
Author(s):  
Indu Kohaar ◽  
Xijun Zhang ◽  
Shyh-Han Tan ◽  
Darryl Nousome ◽  
Kevin Babcock ◽  
...  

2018 ◽  
Vol 119 (1) ◽  
pp. 96-104 ◽  
Author(s):  
Martina Mijuskovic ◽  
Edward J. Saunders ◽  
Daniel A. Leongamornlert ◽  
Sarah Wakerell ◽  
Ian Whitmore ◽  
...  

2014 ◽  
Vol 111 ◽  
pp. S298
Author(s):  
L. Henríquez Hernández ◽  
A. Riveros-Pérez ◽  
A. Valenciano ◽  
J.I. Rodríguez-Melcón ◽  
M. Lloret ◽  
...  

2019 ◽  
Vol 133 ◽  
pp. S604
Author(s):  
D. Carignan ◽  
É. Vigneault ◽  
L. Villeneuve ◽  
S. Desjardins ◽  
S. Magnan ◽  
...  

2020 ◽  
Vol 38 (15_suppl) ◽  
pp. e17523-e17523
Author(s):  
Yu Wei ◽  
Yao Zhu ◽  
Junlong Wu ◽  
Dingwei Ye ◽  
Hao Zeng ◽  
...  

e17523 Background: Germline DNA repair gene (DRG) mutations has emerged as a potential determinant of cancer risk and therapeutic response in PCa. Despite substantial advances in delineating the germline mutation in DRGs among Caucasian population, the prevalence of mutations in DRGs are largely unknown among a large series of unselected prostate cancer patients in Chinese population. Methods: We enrolled 1003 prostate cancer patients from three different hospitals in China, unselected for family history of cancer or age at diagnosis. All patients received germline genetic testing using a clinician-selected multi-gene panel. The 18 DNA repair genes and HOXB13, which has established or emerging potential clinical actionability in PCa, were analyzed in our study. Results: A total of 94 (9.7%) deleterious germline mutations were identified among the 1003 unselected prostate cancer patients. Of these, 5.6% patients carried a BRCA1 or BRCA2 mutations (5.2% in BRCA2 and 0.4% in BRCA1), 3.6% patients carried other DRG mutations (including 10 genes) and 0.5% patients carried HOXB13 mutations. Besides, variants with uncertain significance (VUS) were found in approximately 45% patients. We also divided 633 metastatic PCa patients into 542 de novo metastastic PCa and 91 recurrent metastastic PCa and found mutation frequencies did not differ between these two groups (9.0% vs 11.6%, p = 0.6). Patients with younger age of onset or family history of cancers were more likely to harbour germline mutations in DRGs. However, the rate of germline mutations were still at a high level for patients more than 70 years old (6.7%) and patients without family history of cancers (7.5%). There is no statistically significant difference in the mutation frequencies between patients with metastasis and without metastasis (7.5% vs 9.2%, p = 0.4), which may be because 85% patients without metastasis in our cohort were in high to very high risk group or have lymph node metastasis. Conclusions: To our knowledge, our study reported the largested series of Chinese PCa patients who received germline genetic testing. Our study provided a rationality for germline genetic testing criteria from high risk to metastastic PCa regardless of family history considering the high proportion. In addition, we recommended a multigene panel covering 13 genes ( ATM, BRCA1, BRCA2, CHEK2, FANCA, HOXB13, MSH2, MSH6, NBN, PALB2, RAD51C, RAD51D, TP53) in China. Nevertheless, the high prevalence of VUS (45%) in Chinese PCa patients warrant further efforts.


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