IDENTIFICATION OF UPPER RESPIRATORY TRACT VIRAL PATHOGENS ISOLATED FROM NASAL SWABS USING OLIGONUCLEOTIDE MICROARRAY

CHEST Journal ◽  
2009 ◽  
Vol 136 (4) ◽  
pp. 65S
Author(s):  
Maria Avgoulea ◽  
Niki Apostolopoulou ◽  
Evangelos Balis ◽  
Nikolaos Spanakis ◽  
Eugenios Metaxas ◽  
...  
2021 ◽  
pp. eabh0755
Author(s):  
Neeltje van Doremalen ◽  
Jyothi N. Purushotham ◽  
Jonathan E. Schulz ◽  
Myndi G. Holbrook ◽  
Trenton Bushmaker ◽  
...  

ChAdOx1 nCoV-19/AZD1222 is an approved adenovirus-based vaccine for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) currently being deployed globally. Previous studies in rhesus macaques revealed that intramuscular vaccination with ChAdOx1 nCoV-19/AZD1222 provided protection against pneumonia but did not reduce shedding of SARS-CoV-2 from the upper respiratory tract. Here, we investigated whether intranasally administered ChAdOx1 nCoV-19 reduces detection of virus in nasal swabs after challenging vaccinated macaques and hamsters with SARS-CoV-2 carrying a D614G mutation in the spike protein. Viral loads in swabs obtained from intranasally vaccinated hamsters were decreased compared to control hamsters, and no viral RNA or infectious virus was found in lung tissue after a direct challenge or after direct contact with infected hamsters. Intranasal vaccination of rhesus macaques resulted in reduced virus concentrations in nasal swabs and a reduction in viral loads in bronchoalveolar lavage and lower respiratory tract tissue. Intranasal vaccination with ChAdOx1 nCoV-19/AZD1222 reduced virus concentrations in nasal swabs in two different SARS-CoV-2 animal models, warranting further investigation as a potential vaccination route for COVID-19 vaccines.


PLoS ONE ◽  
2007 ◽  
Vol 2 (9) ◽  
pp. e924 ◽  
Author(s):  
Michael J. Lodes ◽  
Dominic Suciu ◽  
Jodi L. Wilmoth ◽  
Marty Ross ◽  
Sandra Munro ◽  
...  

2020 ◽  
Vol 478 ◽  
pp. 112712 ◽  
Author(s):  
Marina A. Plotnikova ◽  
Sergey A. Klotchenko ◽  
Kirill I. Lebedev ◽  
Alexey A. Lozhkov ◽  
Aleksandr S. Taraskin ◽  
...  

2020 ◽  
Vol 8 (2) ◽  
pp. e001070 ◽  
Author(s):  
Silvia López-Tamayo ◽  
Ines Rubira ◽  
Marcelo De las Heras ◽  
Enrique Castells ◽  
Delia Lacasta

Chronic proliferative rhinitis (CPR) is a fatal prognosis upper respiratory tract disease that affects sheep and is associated with Salmonella enterica subspecies diarizonae serotype 61:k:1, 5, (7). It may be unilateral or bilateral, and although minor changes have been seen in dorsal turbinate, the ventral turbinate is always affected, which makes it possible to observe the proliferative tissue emerging from the nares.The following publication describes the case of an ewe severely affected by a bilateral inflammatory process of the upper respiratory tract. S enterica subspecies diarizonae was isolated from nasal swabs; however, the hottest area observed by a thermal imaging camera was not the ventral area, as usually seen in this process, but the middle area, where the dorsal turbinate is located. In addition, no proliferative tissue was seen through the nostril. At postmortem examination, it was confirmed that CPR seriously affected, for the first time, the dorsal turbinate and ethmoidal areas. Thermographic cameras are useful tools for the diagnosis of upper respiratory tract diseases in sheep.


2020 ◽  
Author(s):  
James Creswell Simpson ◽  
Kristin H. Dwyer

The upper respiratory tract includes the sinuses, nasal passages, pharynx, and larynx, and is susceptible to a variety of pathogens including many viruses.  Although other pathogens can also cause infections of the upper respiratory tract, we are focusing on viral illnesses for the purposes of this review.  Upper respiratory tract infections (URIs) include sinusitis, nasopharyngitis (common cold), pharyngitis, epiglottitis, and tracheitis.  URI’s are one of the most frequent causes for visits to see a physician in the United States. Despite the fact that many URIs are caused by viral pathogens, more than half of patients in both the clinic and the emergency department setting with a diagnosis of URI received antibiotics. URIs are generally mild, and self-limited illnesses; however, it is important to recognize clinical entities that may be severe and warrant more extensive diagnostic workup and treatment such as epiglottitis and tracheitis. This review covers the pathophysiology, diagnosis, treatment, disposition and outcome for multiple viral URIs seen commonly in the emergency department setting. This review contains 3 figures, 8 tables, and 87 references. Key words: Common cold, epiglottitis, nasopharyngitis, pharyngitis, sinusitis, tracheitis, upper respiratory tract infection  


2020 ◽  
Author(s):  
James Creswell Simpson ◽  
Kristin H. Dwyer

The upper respiratory tract includes the sinuses, nasal passages, pharynx, and larynx, and is susceptible to a variety of pathogens including many viruses.  Although other pathogens can also cause infections of the upper respiratory tract, we are focusing on viral illnesses for the purposes of this review.  Upper respiratory tract infections (URIs) include sinusitis, nasopharyngitis (common cold), pharyngitis, epiglottitis, and tracheitis.  URI’s are one of the most frequent causes for visits to see a physician in the United States. Despite the fact that many URIs are caused by viral pathogens, more than half of patients in both the clinic and the emergency department setting with a diagnosis of URI received antibiotics. URIs are generally mild, and self-limited illnesses; however, it is important to recognize clinical entities that may be severe and warrant more extensive diagnostic workup and treatment such as epiglottitis and tracheitis. This review covers the pathophysiology, diagnosis, treatment, disposition and outcome for multiple viral URIs seen commonly in the emergency department setting. This review contains 3 figures, 8 tables, and 87 references. Key words: Common cold, epiglottitis, nasopharyngitis, pharyngitis, sinusitis, tracheitis, upper respiratory tract infection  


Vaccine ◽  
2007 ◽  
Vol 25 (13) ◽  
pp. 2458-2464 ◽  
Author(s):  
Peter Jacoby ◽  
Kelly Watson ◽  
Jacinta Bowman ◽  
Amanda Taylor ◽  
Thomas V. Riley ◽  
...  

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Elizabeth Kwiyolecha ◽  
Britta Groendahl ◽  
Bernard Okamo ◽  
Neema Kayange ◽  
Festo Manyama ◽  
...  

Abstract Upper-respiratory tract infections (URTI) are the leading causes of childhood morbidities. This study investigated etiologies and patterns of URTI among children in Mwanza, Tanzania. A cross-sectional study involving 339 children was conducted between October-2017 and February-2018. Children with features suggestive of URTI such as nasal congestion, dry cough, painful swallowing and nasal discharge with/without fever were enrolled. Pathogens were detected from nasopharyngeal and ear-swabs by multiplex-PCR and culture respectively. Full blood count and C-reactive protein analysis were also done. The median age was 16 (IQR: 8–34) months. Majority (82.3%) had fever and nasal-congestion (65.5%). Rhinitis (55.9%) was the commonest diagnosis followed by pharyngitis (19.5%). Viruses were isolated in 46% of children, the commonest being Rhinoviruses (23.9%). Nineteen percent of children had more than 2 viruses; Rhinovirus and Enterovirus being the commonest combination. The commonest bacteria isolated from ears were Staphylococcus aureus and Pseudomonas aeruginosa. Children with viral pathogens had significantly right shift of lymphocytes (73%—sensitivity). Majority (257/339) of children were symptoms free on eighth day. Viruses are the commonest cause of URTI with Rhinitis being the common diagnosis. Rapid diagnostic assays for URTI pathogens are urgently needed in low-income countries to reduce unnecessary antibiotic prescriptions which is associated with antibiotic resistance.


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