scholarly journals A Causal Perspective on OSIM2 Data Generation, with Implications for Simulation Study Design and Interpretation

2015 ◽  
Vol 3 (2) ◽  
pp. 177-187 ◽  
Author(s):  
Susan Gruber

AbstractResearch by the Observational Medical Outcomes Partnership (OMOP) has focused on developing and evaluating strategies to exploit observational electronic data to improve post-market prescription drug surveillance. A data simulator known as OSIM2 developed by the OMOP statistical methods group has been used as a testbed for evaluating and comparing different estimation procedures for detecting adverse drug-related events from data similar to that found in electronic insurance claims data. The simulation scheme produces a longitudinal dataset with millions of observations designed to closely match marginal distributions of important covariates in a known dataset. In this paper we provide a non-parametric structural equation model for the data generating process and construct the associated directed acyclic graph (DAG) depicting the causal structure. These representations reveal key differences between simulated and real-world data, including a departure from longitudinal causal relationships, absence of (presumed) sources of bias and time ordering of covariates that conflicts with reality. The DAG also reveals the presence of unmeasured baseline confounding of the causal effect of a drug on a subsequent medical condition. Conclusions naively drawn from this simulation study could mislead an investigator trying to gain insight into estimator performance on real data. Applying causal inference tools allows us to draw more informed conclusions and suggests modifications to the simulation scheme that would more closely align simulated and real-world data.

2018 ◽  
Vol 24 (3) ◽  
pp. 95-98 ◽  
Author(s):  
Daphne Guinn ◽  
Erin E Wilhelm ◽  
Grazyna Lieberman ◽  
Sean Khozin

2021 ◽  
Vol 24 ◽  
pp. S211
Author(s):  
E. Brimble ◽  
G. Beek ◽  
L. Wilson ◽  
K. Muirhead ◽  
S. Reichert ◽  
...  

Author(s):  
Lena Steinkasserer ◽  
Delmarko Irmgard ◽  
Tatjana Weiss ◽  
Walter Dirschlmayer ◽  
Michael Mossig ◽  
...  

Abstract Purpose To date, ovarian cancer screening in asymptomatic women has not shown a mortality benefit. The aim of this simulation study was to outline the impact of different histological subtypes on a potential stage-shift, achieved by screening. Methods Real-world data were derived in the period of 2000–2017 from the Klinischen Tumorregister Austria. We estimated five-year overall survival (OS) of patients with ovarian cancer regarding different histological subtypes and FIGO stages. A theoretical model was generated predicting the trend of OS mediated by an eventual down-shifting of ovarian cancer from FIGO stage III/IV to FIGO stage I/II by screening, considering the influence of different histological subtypes. Results 3458 ovarian cancer patients were subdivided according to histological subtypes and FIGO classification. Major difference in distribution of histological types was found between FIGO stage I/II and III/IV. A theoretical down-shift of tumors from high to low FIGO stages based on our registry calculations showed that the five-year OS would increase from 50% to nearly 80% by perfect screening. Conclusion In our simulation study, we showed that down-shifting ovarian cancers by successful screening might increase OS by 30 percentage point. Our results underscore the importance to recognize ovarian cancer as a heterogenous disease with distinct epidemiologic, molecular and clinical features. The individual characteristic of each histotype is of utmost impact on the definition of screening aims and may influence early detection and stage-shift. Efficacy of screening is mainly dependent on detection of high-risk cancer types and not the slow growing low-grade types.


2021 ◽  
Author(s):  
Yoshito Tan ◽  
Tetsuro Ito ◽  
Kensuke Okada

Diagnostic assessment data obtained from online learning platforms for schools are typically accompanied by student background variables and item responses. To leverage such information for cognitive diagnosis, the present study examines the applicability of the lasso prior for variable selection in a deterministic input, noisy-and-gate (DINA) model with attribute-level explanatory variables. We compared the covariate DINA model with and without the lasso prior using a real-world data analysis and a simulation study. In the real-world data analysis, which used a school-sized sample collected from an online learning platform, we found that the lasso prior selected only relatively large effects without substantially affecting the diagnostic classification and item parameter estimation. In the simulation study, we found that the lasso prior did not degrade the accuracy of the diagnostic classification or parameter estimation. Finally, we discuss the situations in which the lasso prior can be useful and appropriate with the covariate DINA model, its limitation, and the scope for future research.


2016 ◽  
Vol 22 ◽  
pp. 219
Author(s):  
Roberto Salvatori ◽  
Olga Gambetti ◽  
Whitney Woodmansee ◽  
David Cox ◽  
Beloo Mirakhur ◽  
...  

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