Polysulfonylamine, CXVII Wasserstoffbrücken in kristallinen Onium-dimesylamiden: Sechs systematisch variierte sek.-Ammonium-dimesylamide mit sechs verschiedenen null-, ein-oder zweidimensionalen Wasserstoffbrückenmustern/ Polysulfonylamines, CXVII Hydrogen Bonding in Crystalline Onium Dimesylamides: Six Systematically Varied sec. - Ammonium Dimesylamides Exhibiting Six Different Zero-, One-, or Two-Dimensional Hydrogen Bonding Patterns

1999 ◽  
Vol 54 (11) ◽  
pp. 1420-1430 ◽  
Author(s):  
Oliver Moers ◽  
Karna Wijaya ◽  
Dagmar Henschel ◽  
Armand Blaschette ◽  
Peter G. Jones
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Ionic Crystals ◽  
Molecular Fragments ◽  
Triclinic Space Group ◽  
X Ray ◽  
Rigid Conformation ◽  
Morpholinium Salt ◽  
Crystal Packings

In order to examine packing preferences and hydrogen bond patterns in secondary ammonium salts, low-temperature X-ray analyses were conducted for six compounds of general formula R2NH2+MeSO2)2 N-, where R2NH2+ = Me2NH2+ (1, triclinic, space group P1̄̄), MeEtNH2+,(2, monoclinic, P21/c), Et2NH2+ (3. triclinic, P1), pyrrolidinium (4, triclinic, P1), piperidinium (5, monoclinic, C2/c) or morpholinium (6, monoclinic, P21/c). Throughout the series, the constant anion retains a rigid conformation approximating to C2 symmetry and thus provides a geometrically reliable set of five potential hydrogen bond acceptors. Nevertheless, the six compounds exhibit a variety of unpredictable packing patterns, showing that, in unfavourable cases, the steric demands of molecular fragments not involved in hydrogen bonding can substantially alter the structure of a family of ionic crystals. In the present structures, the NH2+ donor groups form hydrogen bonds N+-H···N-/O to two (3-6) or three (1,2) adjacent anions. The occurrence of various two-, three- and four-centre hydrogen bonds leads to six different patterns, resulting in cation-anion layers (1, 2), discrete formula unit dimers (3, 4) or cation-anion chains (5, 6); in the morpholinium salt 6, these chains are associated into layers by a weak N+ - H ··· O(cation) interaction. In each of the crystal packings, short C-H···O contacts with H···O ≤ 270 pm and C-H ···O ≥ 130° are observed.

Correspondence: Hydrogen Bond to Gold? 1H NMR is Not a Proof of Hydrogen Bonds in Transition Metal Complexes

2018 ◽  
Author(s):  
Jan Vícha ◽  
Cina Foroutan-Nejad ◽  
Michal Straka
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Chemical Shifts ◽  
X Ray ◽  
Structure And Dynamics ◽  
Hydrogen Bonding Interactions ◽  
Overall Stability ◽  
Gold Compounds ◽  
C Nmr

Illusive Au<sup>I/III</sup>···H hydrogen bonds and their effect on structure and dynamics of molecules have been a matter of debate. While a number of X-ray studies reported gold compounds with short Au<sup>I/III</sup>···H contacts, a solid spectroscopic evidence for Au<sup>I/III</sup>···H bonding has been missing. Recently<a></a><a>, Bakar <i>et al.</i></a> (NATURE COMMUNICATIONS 8:576) reported compound with four short Au···H contacts (2.61­–2.66 Å; X-ray determined). Assuming the central cluster be [Au<sub>6</sub>]<sup>2+</sup>and observing the <sup>1</sup>H (<sup>13</sup>C) NMR resonances at relevant H(C) nuclei deshielded with respect to precursor compound, the authors concluded with reservations that <i>“the present Au···H–C interaction is a kind of “hydrogen bond”, where the [Au<sub>6</sub>]<sup>2+</sup>serves as an acceptor”</i>. Here, we show that the Au<sub>6</sub>cluster in their compound bears negative charge and the Au···H contacts lead to a weak (~1 kcal/mol) auride···hydrogen bonding interactions, though unimportant for the overall stability of<b></b>the molecule. Additionally, computational analysis of NMR chemical shifts reveals that the deshielding effects at respective hydrogen nuclei are not directly related to Au···H–C hydrogen bonding .

Unusual hydrogen bonding inL-cysteine hydrogen fluoride

2015 ◽  
Vol 71 (8) ◽  
pp. 733-741
Author(s):  
V. S. Minkov ◽  
V. V. Ghazaryan ◽  
E. V. Boldyreva ◽  
A. M. Petrosyan
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Hydrogen Fluoride ◽  
Fluoride Ion ◽  
X Ray Diffraction ◽  
Monoclinic System ◽  
X Ray ◽  
Short Hydrogen Bond ◽  
Doubly Charged

L-Cysteine hydrogen fluoride, or bis(L-cysteinium) difluoride–L-cysteine–hydrogen fluoride (1/1/1), 2C3H8NO2S+·2F−·C3H7NO2S·HF or L-Cys+(L-Cys...L-Cys+)F−(F−...H—F), provides the first example of a structure with cations of the `triglycine sulfate' type,i.e.A+(A...A+) (whereAandA+are the zwitterionic and cationic states of an amino acid, respectively), without a doubly charged counter-ion. The salt crystallizes in the monoclinic system with the space groupP21. The dimeric (L-Cys...L-Cys+) cation and the dimeric (F−...H—F) anion are formedviastrong O—H...O or F—H...F hydrogen bonds, respectively, with very short O...O [2.4438 (19) Å] and F...F distances [2.2676 (17) Å]. The F...F distance is significantly shorter than in solid hydrogen fluoride. Additionally, there is another very short hydrogen bond, of O—H...F type, formed by a L-cysteinium cation and a fluoride ion. The corresponding O...F distance of 2.3412 (19) Å seems to be the shortest among O—H...F and F—H...O hydrogen bonds known to date. The single-crystal X-ray diffraction study was complemented by IR spectroscopy. Of special interest was the spectral region of vibrations related to the above-mentioned hydrogen bonds.

Structure in “Amorphous Regions”, Accessible Segments of Fibrils, of the Cotton Fiber

1988 ◽  
Vol 58 (2) ◽  
pp. 96-101 ◽  
Author(s):  
Stanley P. Rowland ◽  
Phyllis S. Howley
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Cotton Fiber ◽  
Cotton Fibers ◽  
X Ray Diffraction ◽  
X Ray ◽  
Chemical Studies

The extent of hydrogen bonding of O(3)H and O(6)H in “amorphous” regions, more specifically in accessible segments of fibrils, of the cotton fiber varied from near perfection to almost complete disorder in samples under examination. Perfection of hydrogen bonding in various samples and segments of cotton fibers decreased with decreasing crystallinity of the cellulose within the fibrils. For the most part, extents of O(3)H hydrogen bonding and O(6)H hydrogen bonding followed similar patterns with substantial differences in degrees of perfection, the O(3)H ranging from about 95% hydrogen bonding down to 8% and the O(6)H) from 92% down to 41%. Details of hydrogen bonds assessed in these chemical studies are discussed relative to crystallinities and assignments of hydrogen bond structures from x-ray diffraction studies.

Correspondence: Hydrogen Bond to Gold? 1H NMR is Not a Proof of Hydrogen Bonds in Transition Metal Complexes

2018 ◽  
Author(s):  
Jan Vícha ◽  
Cina Foroutan-Nejad ◽  
Michal Straka
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Chemical Shifts ◽  
X Ray ◽  
Structure And Dynamics ◽  
Hydrogen Bonding Interactions ◽  
Overall Stability ◽  
Gold Compounds ◽  
C Nmr

Illusive Au<sup>I/III</sup>···H hydrogen bonds and their effect on structure and dynamics of molecules have been a matter of debate. While a number of X-ray studies reported gold compounds with short Au<sup>I/III</sup>···H contacts, a solid spectroscopic evidence for Au<sup>I/III</sup>···H bonding has been missing. Recently<a></a><a>, Bakar <i>et al.</i></a> (NATURE COMMUNICATIONS 8:576) reported compound with four short Au···H contacts (2.61­–2.66 Å; X-ray determined). Assuming the central cluster be [Au<sub>6</sub>]<sup>2+</sup>and observing the <sup>1</sup>H (<sup>13</sup>C) NMR resonances at relevant H(C) nuclei deshielded with respect to precursor compound, the authors concluded with reservations that <i>“the present Au···H–C interaction is a kind of “hydrogen bond”, where the [Au<sub>6</sub>]<sup>2+</sup>serves as an acceptor”</i>. Here, we show that the Au<sub>6</sub>cluster in their compound bears negative charge and the Au···H contacts lead to a weak (~1 kcal/mol) auride···hydrogen bonding interactions, though unimportant for the overall stability of<b></b>the molecule. Additionally, computational analysis of NMR chemical shifts reveals that the deshielding effects at respective hydrogen nuclei are not directly related to Au···H–C hydrogen bonding .

scholarly journals On hydrogen bonding in 1,6-anhydro-β-D-glucopyranose (levoglucosan): X-ray and neutron diffraction and DFT study

2006 ◽  
Vol 62 (5) ◽  
pp. 912-918 ◽  
Author(s):  
Ľubomír Smrčok ◽  
Mariana Sládkovičová ◽  
Vratislav Langer ◽  
Chick C. Wilson ◽  
Miroslav Koóš
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Solid State ◽  
Hydrogen Bonds ◽  
Neutron Diffraction ◽  
Dft Calculations ◽  
Diffraction Data ◽  
Neutron Diffraction Study ◽  
Single Crystal Diffraction ◽  
X Ray

The geometry of hydrogen bonds in 1,6-anhydro-β-D-glucopyranose (levoglucosan) is accurately determined by refinement of time-of-flight neutron single-crystal diffraction data. Molecules of levoglucosan are held together by a hydrogen-bond array formed by a combination of strong O—H...O and supporting weaker C—H...O bonds. These are fully and accurately detailed by the neutron diffraction study. The strong hydrogen bonds link molecules in finite chains, with hydroxyl O atoms acting as both donors and acceptors of hydroxyl H atoms. A comparison of molecular and solid-state DFT calculations predicts red shifts of O—H and associated blue shifts of C—H stretching frequencies due to the formation of hydrogen bonds in this system.

Polysulfonylamine, CLIII [1]. Schwache Wasserstoffbrücken mit aktivierten Methyldonoren: Kristallstrukturen von Cholinium-, Betainium- und Dimethyl[2-(dimethylamino)ethyl]ammonium-dimesylamid Polysulfonylamines, CLIII [1]. Weak Hydrogen Bonding with Activated Methyl Donors: Crystal Structures of Cholinium, Betainium and Dimethyl[2-(dimethylamino)ethyl]ammonium-dimesylamide

2002 ◽  
Vol 57 (5) ◽  
pp. 534-546 ◽  
Author(s):  
Dagmar Henschel ◽  
Oliver Moers ◽  
Karna Wijaya ◽  
Andreas Wirth ◽  
Armand Blaschette ◽  
...  
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Orthorhombic Space Group ◽  
Methyl Donors ◽  
X Ray ◽  
Onium Salts ◽  
Weak Hydrogen Bonds ◽  
Weak Hydrogen Bonding ◽  
Normalized Parameters

In order to study weak hydrogen bonds originating from inductively activated C(sp3)-H donor groups, low-temperature X-ray structures are reported for three onium salts of general formula BH+(MeSO2)2N-, where BH+ is Me3N+CH2CH2OH (1; orthorhombic, space group P212121, Z′ = 1), Me3N+CH2C(O)OH (2; orthorhombic, P212121, Z′ = 1), or Me2HN+CH2CH2NMe2 (3; monoclinic, P21/c, Z′ = 1). The asymmetric units consist of cationanion pairs assembled by an O-H···O=S hydrogen bond in 1, an O-H···N- bond in 2, and an N+-H ··· N- bond in 3. The packings display a plethora of short interionic C(sp3)-H···O/N contacts that are geometrically consistent with weak hydrogen bonding; those taken into consideration have normalized parameters d(H ··· O) ≤ 269 pm, d(H···N) ≤ 257 pm and θ(C-H···O/N) ≥ 127°. The roles of the weak hydrogen bonds are as follows: In structures 1 and 3, the anions are associated into corrugated layers, which intercalate catemers of cations (1) or stacks of discrete cations (3), whereas structure 2 involves cation catemers surrounded by four anion catemers and vice versa; moreover, all cations are linked to adjacent anions by several weak hydrogen bonds (and to one anion in particular by the strong H bond). Among the cation-anion interactions, the N+(CH2-H···)3O tripod pattern arising in 1 and 2 is of special interest.

Polysulfonylamine, CXLII [1]. Ein supramolekulares Monomer-Dimer-Paar: Starke und schwache Wasserstoffbrücken in den Kristallstrukturen von Pyridinium-dimesylamid und 4,4´-Bipyridindiium-bis(dimesylamid) / Polysulfonylamines, CXLII [1]. A Supramolecular Monomer-Dimer Pair: Strong and Weak Hydrogen Bonding in the Crystal Structures of Pyridinium Dimesylamide and 4,4´-Bipyridinediium Bis(dimesylamide)

2001 ◽  
Vol 56 (10) ◽  
pp. 1041-1051 ◽  
Author(s):  
Oliver Moers ◽  
Ilona Lange ◽  
Karna Wijaya ◽  
Armand Blaschette ◽  
Peter G. Jones
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Low Temperature ◽  
Hydrogen Bonds ◽  
Crystal Structures ◽  
Strong Hydrogen Bond ◽  
Orthorhombic Space Group ◽  
X Ray ◽  
Normalized Parameters ◽  
Hydrogen Bonding Networks

In order to study packing arrangements and hydrogen bonding networks, low-temperature X-ray structures were determined for pyH+(MeSO2)2N- (M, orthorhombic, space group P212121, Z′ = 1) and 4,4′-bipyH22+ ·(MeSO2)2N- (D, monoclinic, C2/c, Z′ = 0.5). The structures consist of ionic formula entities assembled by N+-H···N- hydrogen bonds; the dication in D displays crystallographic C2 symmetry and has its two pyridyl moieties twisted by 43.9°. According to the packing architectures, D represents a supramolecular dimer of the monomeric congener M. In particular, the (MeSO2)2N- ions of the M structure are associated via short C(sp3) - H···O contacts to form a diamondoid network, whereas in D a topologically congruent framework is constructed from weakly hydrogen-bonded [(MeSO2)N-]2 nodes. Hexagonal channels in the anion substructures each include two adjacent stacks of monomeric pyH+ or “dimeric” 4,4-bipyH22+ cations that are linked to the channel walls by the strong hydrogen bond(s) and a set of short Car-H···O contacts. All C - H···O taken into consideration have normalized parameters d(H···O) ≤ 270 pm and θ(C - H···O) ≥ 115°.

scholarly journals Single crystal synchrotron X-ray diffraction for imaging hydrogen bond evolution

2014 ◽  
Vol 70 (a1) ◽  
pp. C559-C559
Author(s):  
Lucy Saunders ◽  
Harriott Nowell ◽  
Lynne Thomas ◽  
Paul Raithby ◽  
Chick Wilson
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Single Crystal ◽  
Variable Temperature ◽  
X Ray Diffraction ◽  
X Ray ◽  
Hydrogen Atom Position ◽  
Proton Disorder ◽  
Atom Position

Hydrogen bonding is a valuable intermolecular interaction in "engineering" solid-state materials. This is because of the directionality and relative strength (1) of these bonds. Hydrogen bonds enable charge and energy transfer, via H-bond evolution, in a range of biological and chemical systems (2). Recent work has demonstrated that single crystal X-ray diffraction can be used to image the evolution of hydrogen bonds, including variable temperature proton migration and proton disorder processes. In particular, in a recent study of the temperature dependent proton disorder in hydrogen bonded 3,5-dinitrobenzoic acid (3,5-DNBA) dimers, the proton disorder deduced from data collected on an X-ray laboratory source is in agreement with that found from neutron data (3). This work focuses on variable temperature single crystal synchrotron X-ray diffraction, for the imaging of evolving hydrogen bonds. The development of appropriate methodology is important here, particularly as previous studies have involved laboratory X-ray sources only. Results will be presented from variable temperature data collections on I19, at the Diamond Light Source, and on beamline 11.3.1, at the Advanced Light Source (ALS), on systems such as 3,5-DNBA and co-crystals of benzimidazole, both exhibiting proton disorder across hydrogen bonding interactions. Synchrotron X-ray diffraction measurements have also been used to follow the change in the position of a proton within an intramolecular [N–H···N]+ hydrogen bond across a range of proton-sponge molecular complexes. Importantly, it has been possible to visualise the evolving hydrogen atom position in Fourier difference electron density maps generated from the synchrotron data. In particular, for the 35-DNBA study, the clearest picture of the evolving hydrogen atom position is observed in those generated from data collected at the ALS; even clearer than that observed in X-ray laboratory and neutron measurements on the same system.

The Effect of Different Hydrogen Bonding Schemes on Melting Points of Two Isomeric 2-Hydroxy-bornane-3-carboxylic Acids

2000 ◽  
Vol 55 (8) ◽  
pp. 671-676 ◽  
Author(s):  
Maciej Kubicki ◽  
Teresa Borowiak ◽  
Wiesław Z. Antkowiak
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Melting Point ◽  
Carboxylic Acid ◽  
Hydrogen Bonds ◽  
Intermolecular Hydrogen Bond ◽  
Melting Points ◽  
Intermolecular Hydrogen Bonds ◽  
X Ray ◽  
Single Crystal Analysis

Abstract The crystal structures of two isomeric compounds, 2-endo-hydroxybornane-3-endo-carboxylic acid and 2 -exo -hydroxybomane-3 -endo-carboxylic acid, have been determined by X-ray single crystal analysis. The only difference between these two compounds is the disposition of the 2-hydroxy group with respect to the bomane skeleton. Both compounds show quite different hydrogen bonding schemes. In the endo-hydroxy-endo-carboxy isomer there is one intramolecular and one intermolecular hydrogen bond, which connects molecules into infinite chains, while in the exo-hydroxy-endo-carboxy isomer there are two intermolecular hydrogen bonds that form a more stable architecture of two kinds of chains which interconnect to close rings comprising four molecules. Due to these differences the melting point of 2 is ca. 30° higher than for 1 .

Polysulfonylamine, CLV [1]. Starke und schwache Wasserstoffbrücken in den Kristallstrukturen von 2,2΄-Bipyridinium-, 1,10-Phenanthrolinium- und 1,8-Bis(dimethylamino)naphthalinium-dimesylamid / Polysulfonylamines, CLV [1]. Strong and Weak Hydrogen Bonding in the Crystal Structures of 2,2΄-Bipyridinium, 1,10-Phenanthrolinium and 1,8-Bis(dimethylamino)naphthalinium Dimesylamide

2002 ◽  
Vol 57 (7) ◽  
pp. 777-790 ◽  
Author(s):  
Dagmar Henschel ◽  
Oliver Moers ◽  
Ilona Lange ◽  
Armand Blaschette ◽  
Peter G Jones
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Low Temperature ◽  
Hydrogen Bonds ◽  
Salient Feature ◽  
Monoclinic Space Group ◽  
Proton Sponge ◽  
X Ray ◽  
Organic Bases ◽  
Weak Hydrogen Bonding

As a sequel to prior reports on strong and weak hydrogen bonding in onium di(methanesulfonyl) amide crystals, low-temperature X-ray structures are described for three salts of general formula BH+(MeSO2)2N-, where BH+ is 2,2΄-bipyridinium (1; monoclinic, space group P21/n, Z΄ = 1), 1,10-phenanthrolinium (2; monoclinic, P21/c, Z΄ = 2), or 1,8-bis(dimethylamino) naphthalinium (3; orthorhombic, P212121, Z΄ = 1). Monoprotonation of the organic bases by (MeSO2)2NH results in the formation of an intra-cation N-H···N hydrogen bond, which is asymmetric in 1 and 2, but approximately symmetric in the proton-sponge cation of 3. Moreover, the acidic H atom is engaged in a cation-anion contact N-H···N- in 1 and 2 or H+···Oδ- in 3, thus conferring three-centre character upon the strong hydrogen bonding. Each structure displays a multitude of close interionic C-H···O/N contacts that are geometrically consistent with weak hydrogen bonding. A salient feature is provided by short S-CH2-H···O-S inter-anion contacts, which lead to layers in 1 and to catemers in 2, but are non-existent in structure 3. The cations of both 1 and 2 form π-stacks that are intercalated between the anion layers or surrounded by six anion catemers, whereas in structure 3 each cation is octahedrally coordinated by six anions and vice-versa. The heteroionic connectivity comprises the aforementioned branches of the strong three-centre hydrogen bonds (in 1-3), numerous Car-H···A bonds (1, 2: A = O; 3: A = O, N), S-CH2-H···Nring interactions (1, 2), and close N-CH2-H···O=S contacts (3; possibly destabilizing).

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