scholarly journals Leaf morphological and genetic variation between Quercus rubra and Quercus ellipsoidalis: comparison of sympatric and parapatric populations

2018 ◽  
Vol 61 (1) ◽  
Author(s):  
Oliver Gailing ◽  
Sarah Kostick ◽  
Oliver Caré ◽  
Sudhir Khodwekar
2018 ◽  
Vol 67 (1) ◽  
pp. 127-132 ◽  
Author(s):  
Katrin Burger ◽  
Markus Müller ◽  
Oliver Gailing

Abstract Due to ongoing climate change, forests are exposed to changing environmental conditions, such as increasing temperatures and lower precipitation, to which trees have to adapt. Successful adaptation to changing and variable environments requires sufficient genetic variation within tree populations. Knowledge of the genetic variation of trees is therefore essential, as it provides information for the long-term conservation, stability and productivity of forests. The genetic variation of a species can be analysed with molecular markers. Despite growing genomic and genetic resources for European beech (Fagus sylvatica L.), which is one of the economically and ecologically most important forest tree species in Central Europe, the number of molecular markers for population genetic analyses is still limited. Therefore, the aim of the work is the development of new EST-SSR markers for this species. A total of 72 DNA samples of European beech from three widely separated regions in Germany were used to test 41 primers for variation and polymorphism, 35 of which were originally developed for American beech (Fagus grandifolia Ehrh.) and 6 for red oak (Quercus rubra L.). Fifteen of the primers were polymorphic, 13 monomorphic and 13 did not amplify. In addition, the transferability of the markers was successfully tested in the related species Castanea dentata Bork., Fagus orientalis Lipsky and Q. rubra. The EST-SSR markers tested in this study will be useful for future population genetic analyses and extend the set of available markers in European beech.


2020 ◽  
Vol 139 (2) ◽  
pp. 321-331 ◽  
Author(s):  
Tim Pettenkofer ◽  
Reiner Finkeldey ◽  
Markus Müller ◽  
Konstantin V. Krutovsky ◽  
Barbara Vornam ◽  
...  

2020 ◽  
Vol 69 (1) ◽  
pp. 78-85 ◽  
Author(s):  
Tim Pettenkofer ◽  
Reiner Finkeldey ◽  
Markus Müller ◽  
Konstantin V. Krutovsky ◽  
Barbara Vornam ◽  
...  

AbstractOur main objective was to generate cost-effective chloroplast (cp) DNA markers that are easy to apply and to score. In combination with already published cpSSR markers they should increase haplotype resolution in populations. To discover new cpDNA markers, we sequenced 87-97 % of the entire chloroplast genome (except the second inverted repeat) of 8 trees representing different regions of the Quercus rubra L. natural range with 4,030X-6,297X coverage and assembled the genome sequences using the publicly available chloroplast genome of Quercus rubra L. as a reference. In total, 118 single nucleotide polymorphisms (SNPs) and 107 insertions or deletions (indels) were detected, and 15 cleaved amplified polymorphic sequence (CAPS) markers were developed for Q. rubra. Using these new markers together with five chloroplast microsatellite or simple sequence repeat (cpSSR) markers, we identified 10 haplotypes in our diversity panel of 19 Q. rubra populations. Specifically, two haplotypes based only on the cpSSR markers could now be separated in five haplotypes. These markers are useful to assess haplotype diversity with high resolution and are also transferable to a closely related species, Quercus ellipsoidalis E. J. Hill.


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