scholarly journals A Dense Brown Trout (Salmo trutta) Linkage Map Reveals Recent Chromosomal Rearrangements in theSalmoGenus and the Impact of Selection on Linked Neutral Diversity

2017 ◽  
Vol 7 (4) ◽  
pp. 1365-1376 ◽  
Author(s):  
Maeva Leitwein ◽  
Bruno Guinand ◽  
Juliette Pouzadoux ◽  
Erick Desmarais ◽  
Patrick Berrebi ◽  
...  
2016 ◽  
Author(s):  
Maeva Leitwein ◽  
Bruno Guinand ◽  
Juliette Pouzadoux ◽  
Erick Desmarais ◽  
Patrick Berrebi ◽  
...  

ABSTRACTHigh-density linkage maps are valuable tools for conservation and eco-evolutionary issues. In salmonids, a complex rediploidization process consecutive to an ancient whole genome duplication event makes linkage maps of prime importance for investigating the evolutionary history of chromosome rearrangements. Here, we developed a high-density consensus linkage map for the brown trout (Salmo trutta), a socio-economically important species heavily impacted by human activities. A total of 3,977 ddRAD markers were mapped and ordered in 40 linkage groups using sex- and lineage-averaged recombination distances obtained from two family crosses. Performing map comparison between S. trutta and its sister species Salmo salar revealed extensive chromosomal rearrangements. Strikingly, all of the fusion and fission events that occurred after the S. salar/S. trutta speciation happened in the Atlantic salmon branch, whereas the brown trout remained closer to the ancestral chromosome structure. Using the strongly conserved synteny within chromosome arms, we aligned the brown trout linkage map to the Atlantic salmon genome sequence to estimate the local recombination rate in S. trutta at 3,721 loci. A significant positive correlation between recombination rate and within-population nucleotide diversity (π) was found, indicating that selection constrains variation at linked neutral sites in brown trout. This new high density linkage map provides a useful genomic resource for future aquaculture, conservation and eco-evolutionary studies in brown trout.


2020 ◽  
Vol 12 (20) ◽  
pp. 8670
Author(s):  
Svein Jakob Saltveit ◽  
Åge Brabrand ◽  
Ana Juárez ◽  
Morten Stickler ◽  
Bjørn Otto Dønnum

The Norwegian electrical energy supply system is based on hydropower. The now deregulated energy market has led to increased use of hydropeaking production, leading to greater fluctuations in discharge and water levels below hydropower stations. The power station HOL 1, with an outlet to the Storåne River, is a large hydropeaking facility. With over 300 rapid flow increases and decreases per year since 2012, it is a river subjected to frequent hydropeaking. To quantify the stranding risk downstream of the power plant, the effect of a series of different turbine shutdown scenarios was simulated in an earlier study. The residual flow of 6 m3·s−1 and a full production of 66 m3·s−1 were considered as the baselines for the calculation of dewatered areas. A three-year study of juvenile fish density both upstream as a reference and downstream of the power plant was undertaken. There were very low densities or even an absence of brown trout (Salmo trutta) older than young-of-the-year (YoY) below the outlet of the power station, despite high densities of YoY in previous years. This is probably due to the large and rapid changes in flow below the power station. Hydropeaking has less impact on the earliest life stages of brown trout during spring and summer, as well as on spawning and egg development during winter. This is attributed spawning in late autumn occurring at a low flow seldom reached during hydropeaking. The high survival of YoY during the first summer and early autumn is likely due to a lower frequency of hydropeaking and higher residual flows, leaving a larger wetted area.


Hydrobiologia ◽  
2014 ◽  
Vol 744 (1) ◽  
pp. 223-233 ◽  
Author(s):  
Trygve Hesthagen ◽  
Odd T. Sandlund ◽  
Anders G. Finstad ◽  
Bjørn O. Johnsen

Hydrobiologia ◽  
2015 ◽  
Vol 751 (1) ◽  
pp. 23-24
Author(s):  
Julian Junker ◽  
Florian U. M. Heimann ◽  
Christoph Hauer ◽  
Jens M. Turowski ◽  
Dieter Rickenmann ◽  
...  

2018 ◽  
Vol 75 (5) ◽  
pp. 714-722 ◽  
Author(s):  
Emilie Réalis-Doyelle ◽  
Enric Gisbert ◽  
Carles Alcaraz ◽  
Fabrice Teletchea ◽  
Alain Pasquet

To study the influence of temperature (4, 6, and 12 °C) on the development of brown trout (Salmo trutta) from hatching to the end of metamorphosis, an analysis of allometric growth patterns was conducted to identify two different groups of individuals, namely developmental phases at total lengths (TL) ranging from 2.72 cm at 4 °C to 2.22 cm at 12 °C. Then, a multitrait approach considering different variables like the survival rate, development time, morphometric characteristics, energetic value, and skeletal mineralization was conducted on these two groups. Results indicated that the first growth phase was slower at 4 °C, whereas the second was also slower at this temperature, even though swimming behavior was already present. However, at 12 °C, fry showed a delay in their development (i.e., lower levels of skeletal mineralization and energetic content) during the first growth phase, but they compensated during the second growth phase, reaching the same size in TL when compared with the other temperatures (4 and 6 °C); fry at 12 C° showed low energy reserves. Our study demonstrated that the use of an allometric analysis to identify different developmental stages coupled with a multitrait approach was more efficient than a classical distinction between biological stages (hatching, emergence, first food intake, and exogenous feeding), and this procedure is of interest when evaluating the impact of rearing conditions on early development in fish.


2019 ◽  
Vol 19 (1) ◽  
pp. 167-177 ◽  
Author(s):  
Mahdi Sedighkia ◽  
Asghar Abdoli ◽  
Seyed Ali Ayyoubzadeh ◽  
Amirabas Ahmadi

Hydrobiologia ◽  
2014 ◽  
Vol 751 (1) ◽  
pp. 1-21 ◽  
Author(s):  
Julian Junker ◽  
Florian U. M. Heimann ◽  
Christoph Hauer ◽  
Jens M. Turowski ◽  
Dieter Rickenmann ◽  
...  

Genetics ◽  
2006 ◽  
Vol 172 (4) ◽  
pp. 2405-2419 ◽  
Author(s):  
Karim Gharbi ◽  
Angélique Gautier ◽  
Roy G. Danzmann ◽  
Sonia Gharbi ◽  
Takashi Sakamoto ◽  
...  

2009 ◽  
Vol 40 (4) ◽  
pp. 394-405 ◽  
Author(s):  
M. Olsen ◽  
E. Boegh ◽  
S. Pedersen ◽  
M. F. Pedersen

The purpose of this study was to assess the impact of groundwater abstraction on stream discharge and physical habitat conditions for brown trout (Salmo trutta) in a small Danish stream. Stream discharge was simulated using a lumped hydrological model (NAM) and a scenario was set up for stream discharge reference conditions. Stream physical habitat conditions (WUA) were simulated for four life stages of trout using a hydraulic habitat model (RHYHABSIM). The impact of groundwater abstraction on WUA for trout was assessed by combined simulations from the NAM model and the RHYHABSIM model. The model predicted that groundwater abstraction reduced median annual discharge by 37% and mean annual 90th percentile discharge by 82%. Summer discharge was relatively most affected by groundwater abstraction and WUA was therefore particularly affected by groundwater abstraction during summer. WUA for adult trout was mainly controlled by suitable water depths (>40 cm) even under conditions without abstraction. On an annual basis WUA for fry and juvenile trout was most affected by abstraction. Future modelling should consider improving simulation of low discharges and preferably not use general hydrological models.


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