scholarly journals Close species of rodent superfamily Muroidei in the fauna of Ukraine: taxonomy, biogeography, diagnostics, and ecomorphology

2020 ◽  
Vol 2020 (19) ◽  
pp. 3-26
Author(s):  
Igor Zagorodniuk ◽  
Keyword(s):  
Morphological Differentiation ◽  
Steppe Zone ◽  
Sympatric Species ◽  
The Other ◽  
Similar Species ◽  
Large Species ◽  
Forest Zone ◽  
Wood Mice ◽  
The Carpathians ◽  
Common Voles

The results of the revision of the species composition and related knowledge of taxonomy, biogeography, diagnostics, variability and ecomorphology of polytypic groups of murine rodents, superfamily Muroidei, are presented. These are 5 former "large" species: "wood mice", "common mice", water voles, "shrub voles" and "common voles". Each of these groups is represented in the fauna of Ukraine and neighboring countries by 2–3 species. The two most difficult for revision and for background monitoring of fauna are "forest mice" and "common voles", each of which is represented in the fauna of the region by three morphologically very similar species of different kinship, among which one (the most genetically distant) is widely sympatric to the other two species that are allospecies. Among "forest mice", such species are Sylvaemus uralensis (= microps) against the pair S. sylvaticus + S. witherbyi (= S. falzfeini), and among the "common voles" it is Microtus levis (= rossiaemeridionalis) against the pair M. arvalis + M. obscurus. The other three pairs of species are generally more diverged (at least in terms of habitats and ecology, and in some cases morphology) and clearly less sympatric species. In the group of "common" mice, Mus "musculus" (s.l.), there is a pair of synanthropic and exanthropic forms — M. musculus and M. spicilegus (= M. sergii), which usually do not interact in nature, and therefore poorly diverged in morphology. In the group of "water voles" there is an allopatric pair, represented by the Carpathian-Roztochchian (essentially mountainous, associated with meadows) as well as plain hydrophilic forms, Arvicola scherman and A. amphibius (= A. terrestris). In the group of "shrub voles" there is a sympatric pair of species, one of them has limited distribution in the Carpathians (Terricola tatricus), but the other (T. subterraneus), being sympatric to the first in the Carpathians, also forms numbered populations in lowland forests, as in the forest zone as in the bairak steppe zone. Morphological differentiation between them is generally high, but the Eastern Carpathian form of Terricola tatricus is the smallest in a row of mountain forms of Terricola (multiplex, tatricus, zykovi), which was the reason for its long-term non-recognition in the fauna of Ukraine. For all species, descriptions are presented, including 5 standard parts for this series of publications: general remarks, taxonomy (including nomenclature), distribution (including biotopes), diagnostics (including variability), ecomorphology.Key words: small mammals, habitats, dominance, abundance of species.

scholarly journals Rapid, large-scale species discovery in hyperdiverse taxa using 1D MinION sequencing

BMC Biology ◽  
2019 ◽  
Vol 17 (1) ◽  
Author(s):  
Amrita Srivathsan ◽  
Emily Hartop ◽  
Jayanthi Puniamoorthy ◽  
Wan Ting Lee ◽  
Sujatha Narayanan Kutty ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Large Scale ◽  
Low Cost ◽  
Small Body ◽  
Small Subset ◽  
Similar Species ◽  
Large Species ◽  
Morphological Examination ◽  
Species Discovery ◽  
Short Period

Abstract Background More than 80% of all animal species remain unknown to science. Most of these species live in the tropics and belong to animal taxa that combine small body size with high specimen abundance and large species richness. For such clades, using morphology for species discovery is slow because large numbers of specimens must be sorted based on detailed microscopic investigations. Fortunately, species discovery could be greatly accelerated if DNA sequences could be used for sorting specimens to species. Morphological verification of such “molecular operational taxonomic units” (mOTUs) could then be based on dissection of a small subset of specimens. However, this approach requires cost-effective and low-tech DNA barcoding techniques because well-equipped, well-funded molecular laboratories are not readily available in many biodiverse countries. Results We here document how MinION sequencing can be used for large-scale species discovery in a specimen- and species-rich taxon like the hyperdiverse fly family Phoridae (Diptera). We sequenced 7059 specimens collected in a single Malaise trap in Kibale National Park, Uganda, over the short period of 8 weeks. We discovered > 650 species which exceeds the number of phorid species currently described for the entire Afrotropical region. The barcodes were obtained using an improved low-cost MinION pipeline that increased the barcoding capacity sevenfold from 500 to 3500 barcodes per flowcell. This was achieved by adopting 1D sequencing, resequencing weak amplicons on a used flowcell, and improving demultiplexing. Comparison with Illumina data revealed that the MinION barcodes were very accurate (99.99% accuracy, 0.46% Ns) and thus yielded very similar species units (match ratio 0.991). Morphological examination of 100 mOTUs also confirmed good congruence with morphology (93% of mOTUs; > 99% of specimens) and revealed that 90% of the putative species belong to the neglected, megadiverse genus Megaselia. We demonstrate for one Megaselia species how the molecular data can guide the description of a new species (Megaselia sepsioides sp. nov.). Conclusions We document that one field site in Africa can be home to an estimated 1000 species of phorids and speculate that the Afrotropical diversity could exceed 200,000 species. We furthermore conclude that low-cost MinION sequencers are very suitable for reliable, rapid, and large-scale species discovery in hyperdiverse taxa. MinION sequencing could quickly reveal the extent of the unknown diversity and is especially suitable for biodiverse countries with limited access to capital-intensive sequencing facilities.

Karyological and morphological differentiation of the Tanacetum corymbosum group (Asteraceae) in the Slovak part of the Carpathians

Biologia ◽  
2021 ◽  
Author(s):  
Kristína Pulišová ◽  
Katarína Skokanová ◽  
Barbora Šingliarová ◽  
Judita Kochjarová
Keyword(s):  
Morphological Differentiation ◽  
The Carpathians

Induction of neurite formation in PC12 cells by microinjection of proto-oncogenic Ha-ras protein preincubated with guanosine-5'-O-(3-thiotriphosphate)

1987 ◽  
Vol 7 (12) ◽  
pp. 4553-4556
Author(s):  
T Satoh ◽  
S Nakamura ◽  
Y Kaziro
Keyword(s):  
Nerve Growth Factor ◽  
Pc12 Cells ◽  
Morphological Differentiation ◽  
The Other ◽  
P21 Protein ◽  
Ras Protein ◽  
Oncogenic Ras ◽  
Neurite Formation ◽  
Pheochromocytoma Pc12 ◽  
Oncogenic Protein

Rat pheochromocytoma (PC12) cells differentiate to neuronal cells in response to nerve growth factor. It has been shown that microinjection of oncogenic but not proto-oncogenic p21 protein induces morphological differentiation in PC12 cells (D. Bar-Sagi and J. R. Feramisco, Cell 42:841-848, 1985). In this paper we describe a recombinant human proto-oncogenic Ha-ras protein which can effectively induce neurite extension of PC12 cells when microinjected as a complex with guanosine-5'-O-(3-thiotriphosphate). The protein was found to be less effective when complexed with GTP. On the other hand, an oncogenic ras protein coinjected with guanosine-5'-O-(2-thiodiphosphate) was entirely inactive. These results indicate that the binary p21-GTP complex, but not the p21-GDP complex, is effective in inducing differentiation in PC12 cells, irrespective of the oncogenic or the proto-oncogenic protein.

scholarly journals Induction of neurite formation in PC12 cells by microinjection of proto-oncogenic Ha-ras protein preincubated with guanosine-5'-O-(3-thiotriphosphate).

1987 ◽  
Vol 7 (12) ◽  
pp. 4553-4556 ◽  
Author(s):  
T Satoh ◽  
S Nakamura ◽  
Y Kaziro
Keyword(s):  
Nerve Growth Factor ◽  
Pc12 Cells ◽  
Morphological Differentiation ◽  
The Other ◽  
P21 Protein ◽  
Ras Protein ◽  
Oncogenic Ras ◽  
Neurite Formation ◽  
Pheochromocytoma Pc12 ◽  
Oncogenic Protein

Rat pheochromocytoma (PC12) cells differentiate to neuronal cells in response to nerve growth factor. It has been shown that microinjection of oncogenic but not proto-oncogenic p21 protein induces morphological differentiation in PC12 cells (D. Bar-Sagi and J. R. Feramisco, Cell 42:841-848, 1985). In this paper we describe a recombinant human proto-oncogenic Ha-ras protein which can effectively induce neurite extension of PC12 cells when microinjected as a complex with guanosine-5'-O-(3-thiotriphosphate). The protein was found to be less effective when complexed with GTP. On the other hand, an oncogenic ras protein coinjected with guanosine-5'-O-(2-thiodiphosphate) was entirely inactive. These results indicate that the binary p21-GTP complex, but not the p21-GDP complex, is effective in inducing differentiation in PC12 cells, irrespective of the oncogenic or the proto-oncogenic protein.

scholarly journals Henricia djakonovisp. nov. (Echinodermata, Echinasteridae): a new sea star species from the Sea of Japan

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e2863 ◽  
Author(s):  
Anton Chichvarkhin
Keyword(s):  
New Species ◽  
Sea Of Japan ◽  
Common Species ◽  
Sympatric Species ◽  
Variable Number ◽  
The Other ◽  
The Sea Of Japan ◽  
Sea Star ◽  
The Pacific ◽  
Russian Waters

A new sea star species,H. djakonovisp.n., was discovered in Rudnaya Bay in the Sea of Japan. This is a sympatric species of the well-known and common speciesHenricia pseudoleviusculaDjakonov, 1958. Both species are similar in body size and proportions, shape of skeletal plates, and life coloration, which distinguishes them from the otherHenriciaspecies inhabiting the Sea of Japan. Nevertheless, these species can be distinguished by their abactinal spines: in both species, they are short and barrel-like, but the new species is the onlyHenriciaspecies in Russian waters of the Pacific that possesses such spines with a massive, smooth, bullet-like tip. The spines inH. pseudoleviusculaare crowned with a variable number of well-developed thorns. About half (<50%) of the abactinal pseudopaxillae in the new species are oval, not crescent-shaped as inH. pseudoleviuscula.

scholarly journals Forests timberline in the Ukrainian Carpathians, its preservation and optimization

2014 ◽  
pp. 166-177
Author(s):  
A. Baitsar
Keyword(s):  
Key Words ◽  
Forest Zone ◽  
The Carpathians ◽  
Peat Swamp

Forest timberline (TL) is a compound and dynamic organism, whish is situated on the boundary of the forest zone and the highland. The study embraces regions of the Ukrainian Carpathians. In the Carpathians are determined 2 types of TL: natural and anthropogenic. Subtypes of natural TL: thermal, orographical, winddepen, avalanche depend, biotic, peat- swamp, gregot, talus trail. It was defined 2 options of TL: firry and beechy. Key words: The Ukrainian Carpathians, forest timber – line (TL), polonynas, highland.

scholarly journals Distribution of naked amoebae in the soils of the steppe zone of Ukraine

2020 ◽  
pp. 159-166
Author(s):  
M. Patsyuk ◽  
Keyword(s):  
Cluster Analysis ◽  
Multidimensional Scaling ◽  
Species Complex ◽  
Steppe Zone ◽  
Common Species ◽  
Molecular Clusters ◽  
The Other ◽  
Steppe Region ◽  
Species Complexes ◽  
Naked Amoebae

As a result of the study, in the steppe zone of Ukraine (Odessa, Mykolaiv, Kirovohrad region), 12 species of naked amoebas were identified, which according to the modern Eukaryot system belong to three molecular clusters Tubulinea Smirnov et al., 2005, Discosea Cavalier-Smith, 2004., Discoba Simpson and Hampl et al., 2009. This species Vahlkampfia sp. (1), Vahlkampfia sp. (2), Deuteramoeba mycophaga Page, 1988, Saccamoeba stagnicola Page, 1974, Vexillifera sp., Vannella sp. Ripellaplatypodia Smirnov, Nassonova, Chao et Cavalier-Smith, 2007, Cochliopodium sp. (1), Mayorella sp., Thecamoeba striata Penard, 1890, Stenamoeba stenopodia (Page, 1969) Smirnov et al., 2007, Acanthamoeba sp. (1). In the studied steppe soils, the most common were Vahlkampfia sp. (2), S. stenopodia, Vahlkampfia sp. (1), Vexillifera sp., Cochliopodium sp. (1); the least common – R. platypodia, D. mycophaga, T. striata, Mayorella sp. As a result of the cluster analysis, it was found that the largest share of common species is observed between Mykolaiv and Kirovograd regions (0.71) and Odessa and Kirovograd regions (0.53); the smallest is between the Odessa and Mykolaiv regions (0.43). According to the results of cluster analysis, the faunistic complexes of soil species of amoebae of the steppe region of Ukraine are united into two clusters: one of them being complexes characteristic of the Odessa region, and the other complexes of the Mykolaiv and Kirovograd regions. According to the results of nonparametric multidimensional scaling, it is established that the species complex of soil amoebae in the Kirovograd and Mykolaiv regions is determined by the increased soil temperature and acidity, compared to the Odessa region. As for moisture, this factor has little effect on the species complexes amoebae steppe region of Ukraine.

scholarly journals Perch Selection by Three Cooccurring Species ofCelithemis(Odonata: Libellulidae): Testing for a Competitive Hierarchy among Similar Species

2016 ◽  
Vol 2016 ◽  
pp. 1-8 ◽  
Author(s):  
Wade B. Worthen ◽  
Parker H. Morrow
Keyword(s):  
Body Size ◽  
Niche Partitioning ◽  
Open Water ◽  
The Other ◽  
Similar Species ◽  
Male Body ◽  
Size Dependent ◽  
Anatomical Characters ◽  
Relative Abundances ◽  
Imagej Software

In many communities of perching dragonflies (Odonata: Libellulidae), a size-dependent competitive hierarchy creates a positive relationship between male body size and perch height. We tested for this pattern among three similar-sized species:Celithemis elisa,C. fasciata, andC. ornata.Males were caught and photographed from May to July 2015 at Ashmore Heritage Preserve, Greenville County, SC, USA, and perch heights and perch distance to open water were measured. Five indices of body size were measured with ImageJ software: abdomen length, forewing length, hindwing length, area of forewing, and area of hindwing.Celithemis fasciatawas significantly larger than the other two species for all five anatomical characters and used perches that were significantly taller and closer to open water than the other species, though these differences changed over the summer. Aggressive interactions between and within species were tallied and compared to expected distributions based on mean relative abundances derived from hourly abundance counts. Patterns of interspecific aggression were also consistent with a size-dependent hierarchy: the largeC. fasciatawas attacked less frequently, and the smallC. ornatamore frequently, than predicted by their relative abundances. We conclude that even small differences in body size may contribute to niche partitioning in perch selection.

scholarly journals The rediscovery of the Red-tailed Newtonia Newtonia fanovanae in south-eastern Madagascar with notes on the natural history of the genus Newtonia

1991 ◽  
Vol 1 (1) ◽  
pp. 33-45 ◽  
Author(s):  
Steven M. Goodman ◽  
Thomas S. Schulenberg
Keyword(s):  
Natural History ◽  
Sympatric Species ◽  
The Other ◽  
Single Specimen ◽  
The South ◽  
Humid Forest ◽  
Ecological Relationships ◽  
South Eastern ◽  
History Of ◽  
Morphological Differences

SummaryThe Red-tailed Newtonia Newtonia fanovanae, previously known from a single specimen from the eastern rainforest of central Madagascar, was rediscovered in October 1989 in the Marosohy Forest in the south-east of the island. In the study area, N. fanovanae occurs in the middle and upper section of the canopy of humid forest between 300 and 1,300 m. Ecological relationships with the other two sympatric Newtonia, amphichroa and brunneicauda, are discussed. The main morphological differences between fanovanae and the other two sympatric species are that the former has relatively long wings and short tarsi. The song of fanovanae is described and compared to other members of the genus. Our observations on the morphology, behaviour and vocalisations of N. fanovanae confirm its validity as a species.Le Newtonie à queue rouge Newtonia fanovanae jusqu'à presént uniquement connu d'un seul spécimen provenant de la partie orientale de la forêt tropicale du Madagascar central, fût redécouvert en octobre 1989 dans la forêt de Marosohy au sud-est de l'île. N. fanovanae fût rencontré dans les parties moyennes et supérieures du feuillage de la forêt humide entre 300 et 1,300 m d'altitude. Les relations écologiques avec les deux espèces sympatriques de Newtonia, amphichroa et brunneicauda sont discutées. Les différences morphologiques principales entre fanovanae et les deux espéces sympatriques sont que celle-ci a des ailes relativement longues et des tarses courts. Le chant de fanovanae est decrit et comparé avec celui d'autres membres du genre. Nos observations sur la morphologie, le comportement et les vocalizations de N. fanovanae confirment sa validité comme bonne espéce.

Coexistence of morphologically similar bats (Vespertilionidae) on Madagascar: stable isotopes reveal fine-grained niche differentiation among cryptic species

2014 ◽  
Vol 31 (2) ◽  
pp. 153-164 ◽  
Author(s):  
Melanie Dammhahn ◽  
Claude Fabienne Rakotondramanana ◽  
Steven M. Goodman
Keyword(s):  
Stable Isotopes ◽  
Deciduous Forest ◽  
Niche Differentiation ◽  
Sympatric Species ◽  
Trophic Niche ◽  
Trophic Levels ◽  
Seasonal Migration ◽  
Similar Species ◽  
Fine Grained ◽  
Hair Samples

Abstract:Based on niche theory, closely related and morphologically similar species are not predicted to coexist due to overlap in resource and habitat use. Local assemblages of bats often contain cryptic taxa, which co-occur despite notable similarities in morphology and ecology. We measured in two different habitat types on Madagascar levels of stable carbon and nitrogen isotopes in hair (n = 103) and faeces (n = 57) of cryptic Vespertilionidae taxa to indirectly examine whether fine-grained trophic niche differentiation explains their coexistence. In the dry deciduous forest (Kirindy), six sympatric species ranged over 6.0‰ in δ15N, i.e. two trophic levels, and 4.2‰ in δ13C with a community mean of 11.3‰ in δ15N and −21.0‰ in δ13C. In the mesic forest (Antsahabe), three sympatric species ranged over one trophic level (δ15N: 2.4‰, δ13C: 1.0‰) with a community mean of 8.0‰ δ15N and −21.7‰ in δ13C. Multivariate analyses and residual permutation of Euclidian distances in δ13C–δ15N bi-plots revealed in both communities distinct stable isotope signatures and species separation for the hair samples among coexisting Vespertilionidae. Intraspecific variation in faecal and hair stable isotopes did not indicate that seasonal migration might relax competition and thereby facilitate the local co-occurrence of sympatric taxa.

Sign in / Sign up

Export Citation Format

Share Document