On the synergy between Ariel and ground-based high-resolution spectroscopy

Since the first discovery of an extra-solar planet around a main-sequence star, in 1995, the number of detected exoplanets has increased enormously. Over the past two decades, observational instruments (both onboard and on ground-based facilities) have revealed an astonishing diversity in planetary physical features (i. e. mass and radius), and orbital parameters (e.g. period, semi-major axis, inclination). Exoplanetary atmospheres provide direct clues to understand the origin of these differences through their observable spectral imprints. In the near future, upcoming ground and space-based telescopes will shift the focus of exoplanetary science from an era of “species discovery” to one of “atmospheric characterization”. In this context, the Atmospheric Remote-sensing Infrared Exoplanet Large (Ariel) survey, will play a key role. As it is designed to observe and characterize a large and diverse sample of exoplanets, Ariel will provide constraints on a wide gamut of atmospheric properties allowing us to extract much more information than has been possible so far (e.g. insights into the planetary formation and evolution processes). The low resolution spectra obtained with Ariel will probe layers different from those observed by ground-based high resolution spectroscopy, therefore the synergy between these two techniques offers a unique opportunity to understanding the physics of planetary atmospheres. In this paper, we set the basis for building up a framework to effectively utilise, at near-infrared wavelengths, high-resolution datasets (analyzed via the cross-correlation technique) with spectral retrieval analyses based on Ariel low-resolution spectroscopy. We show preliminary results, using a benchmark object, namely HD 209458 b, addressing the possibility of providing improved constraints on the temperature structure and molecular/atomic abundances.

Mapping the hidden diversity of the Geophagus sensu stricto species group (Cichlidae: Geophagini) from the Amazon basin

South American freshwater ichthyofauna is taxonomically the most diverse on the planet, yet its diversity is still vastly underestimated. The Amazon basin alone holds more than half of this diversity. The evidence of this underestimation comes from the backlog of morphologically distinct, yet undescribed forms deposited in museum collections, and from DNA-based inventories which consistently identify large numbers of divergent lineages within even well-studied species groups. In the present study, we investigated lineage diversity within the Geophagus sensu stricto species group. To achieve these objectives, we analyzed 337 individuals sampled from 77 locations within and outside the Amazon basin representing 10 nominal and six morphologically distinct but undescribed species. We sequenced the mitochondrial cytochrome c oxidase subunit I (COI) and delimited lineages using four different single-locus species discovery methods (mPTP-15 lineages; LocMin-14 lineages; bGMYC-18 lineages; and GMYC-30 lineages). The six morphologically distinct but undescribed species were also delimited by the majority of the species discovery methods. Five of these lineages are restricted to a single collection site or a watershed and their habitats are threatened by human activities such as deforestation, agricultural activities and construction of hydroelectric plants. Our results also highlight the importance of combining DNA and morphological data in biodiversity assessment studies especially in taxonomically diverse tropical biotas.

Challenges of applying monophyly in the phylogenetic shallows: taxonomic reappraisal of the Dactylorhiza maculata group

SummaryThe first study of the taxonomically critical European orchid genus Dactylorhiza to use next-generation DNA sequencing generated the statistically best-supported reconstruction of its phylogeny to date. However, the two competing topologies obtained within the monophyletic Section Maculatae differed radically in the placement of the D. maculata s.s.–D. foliosa clade. Both topologies showed D. foliosa to be nested deeply within D. maculata s.s., and suggested that D. saccifera s.l. is paraphyletic, D. saccifera s.s. from south-eastern Europe and Asia Minor diverging before D. gervasiana from south-central Europe (a taxon typically viewed as a subspecies of D. saccifera or, more often, ignored completely). The poorly-sampled but character-rich morphometric comparison presented here suggests that D. saccifera s.s. and D. gervasiana cannot be distinguished with confidence using morphological characters and that, if D. gervasiana is accepted as a species, it is effectively cryptic. The diploid D. foliosa is accepted as an island endemic species, despite rendering paraphyletic the autotetraploid D. maculata s.s.; all other named taxa within the D. maculata s.s. clade are considered infraspecific. Dactylorhiza fuchsii is indisputably a bona fide species rather than a subspecies but it does not merit becoming the basis of a taxonomic section separate from D. maculata s.s. The strongly contrasting degrees of molecular vs morphological disparity reported here are representative of a more general trend evident in groups that have experienced comparatively recent speciation, as is the need to recognise occasional paraphyletic species when circumscribing species by integrating genotypic and phenotypic data categories. Explicit taxonomic criteria combined with a comparative, monographic approach are needed to achieve consistency of ranking. Disproving hypotheses of species status is judged a criminally underrated activity, actually being as important to outcomes as much-vaunted species "discovery".

Seen only once: an evolutionarily distinct species of Toadlet (Uperoleia: Myobatrachidae) from the Wessel Islands of northern Australia

There is a high rate of recent species discovery in remote regions of northern Australia, especially for amphibians and reptiles. The Wessel Islands, located in the northeastern corner of the Northern Territory, has recently been identified as a region of high species and phylogenetic endemism based on samples collected during the sole reptile and amphibian survey there in 1993. Using a phylogenetic approach, we describe a new, evolutionarily distinct species of Uperoleia endemic to the Wessel Islands. This description is based on three specimens, one female and two juveniles, which represent the only confirmed vouchers of the species. Due to the low number of specimens, this new species cannot be diagnosed morphologically from other closely related Uperoleia, and nothing is currently known about the mating call or basic biology. The discovery of this species provides further evidence for the islands’ importance as an area of endemism and identifies an urgent need for further surveys to document the unique biological diversity of the Wessel Islands.

Five new species of the genus Pholcus Walckenaer (Araneae: Pholcidae) from South Korea

Although the high level of species diversity within the Pholcus phungiformes-group (Araneae: Pholcidae) in the Korean Peninsula has been recognized recently, taxonomic studies, including new species discovery, have not been conducted in western regions of South Korea. In this study, five additional species belonging to the Pholcus phungiformes-group discovered from Seoul and surrounding areas are described as new, viz., Pholcus seoulensis Lee & Lee, sp. nov. Pholcus suraksanensis Lee & Lee, sp. nov., Pholcus incheonensis Lee & Lee, sp. nov., Pholcus seokmodoensis Lee & Lee, sp. nov. and Pholcus chilgapsanensis Lee & Lee, sp. nov. Detailed descriptions and geographic distributions are provided with accompanying photographs.

Experiences from the Danish Fungal Atlas: Linking mushrooming, nature conservation and primary biodiversity research

The Danish Fungal Atlas is a citizen science project launched in 2009 in collaboration among the University of Copenhagen, Mycokey and the Danish Mycological Society. The associated database now holds almost 1 million fungal records, contributed by more than 3000 recorders. The records represent more than 8000 fungal species, of which several hundred have been recorded as new to Denmark during the project. In addition several species have been described as new to science. Data are syncronized with the Global Biodiversity Information Facility (GBIF) on a weekly basis, and is hence freely available for research and nature conservation. Data have been used for systematic conservation planning in Denmark, and several research papers have used data to explore subjects such as host selection in wood-inhabiting fungi (Heilmann‐Clausen et al. 2016), recording bias in citizen science (Geldmann et al. 2016), fungal traits (Krah et al. 2019), biodiversity patterns (e.g. Andrew et al. 2018), and species discovery (Heilmann-Clausen et al. 2019). The project database is designed to faciliate direct interactions and communication among volunteers. The validation of submitted records is interactive and combines species-specific smart filters, user credibility, and expert tools to secure the highest possible data credibility. In 2019, an AI (artificial intelligence) trained species identification tool was launched along with a new mobile app, enabling users to identify and record species directly in the field (Sulc et al. 2020). At the same time, DNA sequencing was tested as an option to test difficult identifications, and in 2021 a high-throughput sequencing facility was developed to allow DNA sequencing of hundreds of fungal collections at a low cost. The presentation will give details on data validation, data use and how we have worked with cultivation of volunteers to provide a truly coherent model for collaboration on mushroom citizen science.

Shrunken Life: Discourses of the Cryptic and the Miniature in Madagascar

As scientists scour remnant habitats and “unmask” cryptic species with DNA barcoding, a boom of species discovery has enchanted the world. In Madagascar, recent discoveries of previously unknown miniature frogs, chameleons, and lemurs often photographed on human fingers or cradled in hands, have captured the public imagination. In this imagery of scale, the giant finger conveys the outsized impact of humanity on Earth, or points to what Susan Stewart (1996, p. 74) calls “a physical world of disorder and disproportion.” Although the phenomenon of insular gigantism and dwarfism has shaped scientific discourses of evolution and extinction since the nineteenth century, recent reportage on “new” miniature and cryptic species reflects a sensibility beyond wistful nostalgia for creatures past. Species miniaturism evolves out of habitat loss, and living minifauna encapsulate the contraction of existential time, all the more pronounced by the effects of climate change. Photographs of cryptic minifauna therefore compel us to reflect on the whole of our losses, while they fuel the impulse to restock the “library of life” at micro-scale.

Cheilanthes ecuadorensis: A New Species of Cheilanthes s. s. (Pteridaceae) from Northern South America

Abstract— Ongoing research on the taxonomically complex genus Cheilanthes (Pteridaceae; Cheilanthoideae) has resulted in the identification of a new species from Loja Province in Ecuador, Cheilanthes ecuadorensis, described and illustrated herein. Originally collected in 1988 and identified as C. cf. rufopunctata, C. ecuadorensis is clearly distinct from that species in having pubescent adaxial blade surfaces and narrow, poorly-differentiated false indusia (rather than the glabrous adaxial surfaces and wide false indusia of C. rufopunctata). Among the South American species currently included in Cheilanthes, C. ecuadorensis is superficially most similar to C. pilosa. However, our molecular phylogenetic analyses indicate that C. ecuadorensis is sister to C. micropteris, the morphologically disparate generitype of Cheilanthes. Here we examine the phylogenetic relationships, morphology, cytogenetics, and geography of these four South American Cheilanthes species in a study that, once again, highlights the importance of herbaria in the process of new species discovery.

Changes of knowledge of the fauna volume: species discovery curve in case of silken-fungus beetles of the Carpathians

The approach to the analysis of the fauna composition and completeness of its detection through the concept of “species discovery curve” is considered. Beetles of the family Cryptophagidae were taken as a model group. The dynamics of the accumulation of the information about the composition and volume of the Cryptophagidae fauna of the Ukrainian Carpathians during the eight stages of their study (the middle XIX, late XIX and the end of XIX century, the beginning of the XX century, the period until 1930–1940; middle and second half of XX century, and the current state for 1999 and 2021) are presented. In general, the composition of the cryptophagid fauna in the Ukrainian Carpathians is estimated at 116 species. This is 16 % more compared to what was known 100 years ago, i.e. each stage of the study adds about 5 % to the known species richness of this group of beetles. The components of fauna changes are analysed separately: 1) due to the changes in the nomenclature of existing species, 2) as a result of finding rare species (i.e. strengthening research efforts), 3) due to division or vice versa – combining existing species into two or three “small” species that were previously considered as morphs, varieties, or were not distinguished.