Reconstructing a lost world: Ediacaran rangeomorphs from Spaniard's Bay, Newfoundland

2009 ◽  
Vol 83 (4) ◽  
pp. 503-523 ◽  
Author(s):  
Guy M. Narbonne ◽  
Marc Laflamme ◽  
Carolyn Greentree ◽  
Peter Trusler
Keyword(s):  
Three Dimensional ◽  
Higher Order ◽  
Morphological Features ◽  
Attachment Point ◽  
Architectural Elements ◽  
Order Branch ◽  
Central Stalk ◽  
Self Similar ◽  
The Individual ◽  
Avalon Peninsula

Ediacaran fronds at Spaniard's Bay on the Avalon Peninsula of Newfoundland exhibit exquisite, three-dimensional preservation with morphological features less than 0.05 mm in width visible on the best preserved specimens. Most of the nearly 100 specimens are juvenile rangeomorphs, an extinct Ediacaran clade that numerically dominated the early evolution of complex multicellular life. Spaniard's Bay rangeomorphs are characterized by cm-scale architectural elements exhibiting self-similar branching over several fractal scales that were used as modules in construction of larger structures. Four taxa of rangeomorph fronds are present – Avalofractus abaculus n. gen. et sp., Beothukis mistakensis Brasier and Antcliffe, Trepassia wardae (Narbonne and Gehling), and Charnia cf. C. masoni Ford. All of these taxa exhibit an alternate array of primary rangeomorph branches that pass off a central stalk or furrow that marks the midline of the petalodium. Avalofractus is remarkably self similar over at least four fractal scales, with each scale represented by double-sided rangeomorph elements that were constrained only at their attachment point with the higher-order branch and thus were free to rotate and pivot relative to other branches. Beothukis is similar in organization, but its primary branches show only one side of a typical rangeomorph element, probably due to longitudinal branch folding, and the position of the individual branches was moderately constrained. Trepassia shows only single-sided branches with both primary and secondary branches emanating from a central stalk or furrow; primary branches were capable of minor pivoting as reflected in bundles of secondary branches. Charnia shows only single-sided primary branches that branch from a zigzag central furrow and that were firmly constrained relative to each. This sequence provides a developmental linkage between Rangea-type and Charnia-type rangeomorphs. Avalonian assemblages show a wide array of rangeomorph constructions, but later Ediacaran assemblages contain a lower diversity of rangeomorphs represented mainly by well-constrained forms.

scholarly journals Organised large structure in the post-transition mixing layer. Part 2. Large-eddy simulation

2014 ◽  
Vol 762 ◽  
pp. 302-343 ◽  
Author(s):  
W. A. McMullan ◽  
S. Gao ◽  
C. M. Coats
Keyword(s):  
Linear Growth ◽  
Mixing Layer ◽  
Three Dimensional ◽  
Continuous Linear ◽  
Large Structure ◽  
Transition Flow ◽  
Large Structures ◽  
Large Eddy ◽  
Self Similar ◽  
The Individual

AbstractThree-dimensional large-eddy simulations of two-stream mixing layers developing spatially from laminar boundary layers are presented, replicating wind-tunnel experiments carried out in Part 1 of this study. These simulations have been continued through the mixing transition and into the fully turbulent self-similar flow beyond. In agreement with the experiments, the simulations show that the familiar mechanism of growth by vortex amalgamation is replaced at the mixing transition by a previously unrecognised mechanism in which the spanwise-coherent large structures individually undergo continuous linear growth. In the post-transition flow it is this continuous linear growth of the individual structures that produces the self-similar growth of the mixing-layer thickness, the large-structure interactions occurring as a consequence of the growth, not its cause. New information is also presented on the topography of the organised post-transition flow and on its cyclical evolution through the lifetimes of the individual large structures. The dynamic and kinematic implications of these findings are discussed and shown to define quantitatively the growth rate of the homogeneous post-transition mixing layer in its organised state.

scholarly journals The Structural Biology of Septins and Their Filaments: An Update

2021 ◽  
Vol 9 ◽  
Author(s):  
Italo A. Cavini ◽  
Diego A. Leonardo ◽  
Higor V. D. Rosa ◽  
Danielle K. S. V. Castro ◽  
Humberto D’Muniz Pereira ◽  
...  
Keyword(s):  
Structural Information ◽  
Three Dimensional ◽  
Higher Order ◽  
Coiled Coils ◽  
Cytoskeletal Proteins ◽  
Point Of View ◽  
The Individual ◽  
Molecular Components ◽  
Order Complexes ◽  
Order Structures

In order to fully understand any complex biochemical system from a mechanistic point of view, it is necessary to have access to the three-dimensional structures of the molecular components involved. Septins and their oligomers, filaments and higher-order complexes are no exception. Indeed, the spontaneous recruitment of different septin monomers to specific positions along a filament represents a fascinating example of subtle molecular recognition. Over the last few years, the amount of structural information available about these important cytoskeletal proteins has increased dramatically. This has allowed for a more detailed description of their individual domains and the different interfaces formed between them, which are the basis for stabilizing higher-order structures such as hexamers, octamers and fully formed filaments. The flexibility of these structures and the plasticity of the individual interfaces have also begun to be understood. Furthermore, recently, light has been shed on how filaments may bundle into higher-order structures by the formation of antiparallel coiled coils involving the C-terminal domains. Nevertheless, even with these advances, there is still some way to go before we fully understand how the structure and dynamics of septin assemblies are related to their physiological roles, including their interactions with biological membranes and other cytoskeletal components. In this review, we aim to bring together the various strands of structural evidence currently available into a more coherent picture. Although it would be an exaggeration to say that this is complete, recent progress seems to suggest that headway is being made in that direction.

Semi-automated methods for 3-D reconstruction of macromolecular complexes

1995 ◽  
Vol 53 ◽  
pp. 42-43
Author(s):  
B. Carragher ◽  
M. Whittaker
Keyword(s):  
Three Dimensional ◽  
Time Saving ◽  
Macromolecular Complexes ◽  
Symmetry Properties ◽  
Dimensional Reconstruction ◽  
Experienced Operator ◽  
Projection Images ◽  
The Individual ◽  
Natural Symmetry

Techniques for three-dimensional reconstruction of macromolecular complexes from electron micrographs have been successfully used for many years. These include methods which take advantage of the natural symmetry properties of the structure (for example helical or icosahedral) as well as those that use single axis or other tilting geometries to reconstruct from a set of projection images. These techniques have traditionally relied on a very experienced operator to manually perform the often numerous and time consuming steps required to obtain the final reconstruction. While the guidance and oversight of an experienced and critical operator will always be an essential component of these techniques, recent advances in computer technology, microprocessor controlled microscopes and the availability of high quality CCD cameras have provided the means to automate many of the individual steps.During the acquisition of data automation provides benefits not only in terms of convenience and time saving but also in circumstances where manual procedures limit the quality of the final reconstruction.

Phonetic iconicity in the evaluative morphology of a sample of Indo-European, Niger-Congo and Austronesian languages

2010 ◽  
Vol 3 (2) ◽  
pp. 156-180 ◽  
Author(s):  
Renáta Gregová ◽  
Lívia Körtvélyessy ◽  
Július Zimmermann
Keyword(s):  
Three Dimensional ◽  
Sound Symbolism ◽  
Three Dimensional Model ◽  
Austronesian Languages ◽  
Place Of Articulation ◽  
European Languages ◽  
Phonetic Symbolism ◽  
The Individual ◽  
Core Vocabulary

Universals Archive (Universal #1926) indicates a universal tendency for sound symbolism in reference to the expression of diminutives and augmentatives. The research ( Štekauer et al. 2009 ) carried out on European languages has not proved the tendency at all. Therefore, our research was extended to cover three language families – Indo-European, Niger-Congo and Austronesian. A three-step analysis examining different aspects of phonetic symbolism was carried out on a core vocabulary of 35 lexical items. A research sample was selected out of 60 languages. The evaluative markers were analyzed according to both phonetic classification of vowels and consonants and Ultan's and Niewenhuis' conclusions on the dominance of palatal and post-alveolar consonants in diminutive markers. Finally, the data obtained in our sample languages was evaluated by means of a three-dimensional model illustrating the place of articulation of the individual segments.

Associations Between Higher-Order Values Vary with Age, Education, and Income

2020 ◽  
Author(s):  
Maksim Rudnev
Keyword(s):  
Cognitive Abilities ◽  
Developed Countries ◽  
European Social Survey ◽  
Higher Order ◽  
Group Differences ◽  
Social Survey ◽  
Value Structures ◽  
Younger Age ◽  
The Individual ◽  
Representative Samples

A theory of basic human values relies on the similarity of value structures across countries. It has been well established that the quasi-circumplex value structure as a whole is indeed universal. However, less attention has been paid to the associations between specific values. This study investigated associations between four higher-order values across age, education, and income groups. We analyzed the data from national representative samples collected in 29 countries as part of the fourth round of the European Social Survey with a series of multilevel regressions. Younger age, higher levels of education and income coincided with higher independence of the four adjacent higher-order values, whereas among older, less educated, and less wealthy groups, values tended to merge into a single dimension of Social versus Person Focus. These differences were slightly weaker in more economically developed countries. The group differences in value associations may follow from corresponding differences in the degree of societal and individual empowerment, cognitive abilities, and socialization experiences. Accounting for the individual differences in relations between values may bring deeper understanding and higher predictive power to the studies of links between values and various behaviors or attitudes. , value structure, value interactions, European Social Survey

VERY HIGH-ORDER SPATIALLY IMPLICIT SCHEMES FOR COMPUTATIONAL ACOUSTICS ON CURVILINEAR MESHES

2001 ◽  
Vol 09 (04) ◽  
pp. 1259-1286 ◽  
Author(s):  
MIGUEL R. VISBAL ◽  
DATTA V. GAITONDE
Keyword(s):  
Three Dimensional ◽  
Radiation Condition ◽  
Higher Order ◽  
High Order ◽  
High Frequencies ◽  
Decomposition Strategies ◽  
The Impact ◽  
Spurious Modes ◽  
Very High ◽  
Computational Strategy

A high-order compact-differencing and filtering algorithm, coupled with the classical fourth-order Runge–Kutta scheme, is developed and implemented to simulate aeroacoustic phenomena on curvilinear geometries. Several issues pertinent to the use of such schemes are addressed. The impact of mesh stretching in the generation of high-frequency spurious modes is examined and the need for a discriminating higher-order filter procedure is established and resolved. The incorporation of these filtering techniques also permits a robust treatment of outflow radiation condition by taking advantage of energy transfer to high-frequencies caused by rapid mesh stretching. For conditions on the scatterer, higher-order one-sided filter treatments are shown to be superior in terms of accuracy and stability compared to standard explicit variations. Computations demonstrate that these algorithmic components are also crucial to the success of interface treatments created in multi-domain and domain-decomposition strategies. For three-dimensional computations, special metric relations are employed to assure the fidelity of the scheme in highly curvilinear meshes. A variety of problems, including several benchmark computations, demonstrate the success of the overall computational strategy.

scholarly journals Modelling Polycrystalline Materials: An Overview of Three-Dimensional Grain-Scale Mechanical Models

2013 ◽  
Vol 05 (01) ◽  
pp. 1350002 ◽  
Author(s):  
I. Benedetti ◽  
F. Barbe
Keyword(s):  
Three Dimensional ◽  
Constitutive Modelling ◽  
Polycrystalline Materials ◽  
High Fidelity ◽  
Computational Capability ◽  
Mechanical Models ◽  
Three Dimensional Models ◽  
The Individual ◽  
Individual Grains ◽  
Micro Structures

A survey of recent contributions on three-dimensional grain-scale mechanical modelling of polycrystalline materials is given in this work. The analysis of material micro-structures requires the generation of reliable micro-morphologies and affordable computational meshes as well as the description of the mechanical behavior of the elementary constituents and their interactions. The polycrystalline microstructure is characterized by the topology, morphology and crystallographic orientations of the individual grains and by the grain interfaces and microstructural defects, within the bulk grains and at the inter-granular interfaces. Their analysis has been until recently restricted to two-dimensional cases, due to high computational requirements. In the last decade, however, the wider affordability of increased computational capability has promoted the development of fully three-dimensional models. In this work, different aspects involved in the grain-scale analysis of polycrystalline materials are considered. Different techniques for generating artificial micro-structures, ranging from highly idealized to experimentally based high-fidelity representations, are briefly reviewed. Structured and unstructured meshes are discussed. The main strategies for constitutive modelling of individual bulk grains and inter-granular interfaces are introduced. Some attention has also been devoted to three-dimensional multiscale approaches and some established and emerging applications have been discussed.

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