IDENTIFICATION OF QTLs ASSOCIATED WITH COMMERCIAL POSTHARVEST QUALITY TRAITS AND DISORDERS USING A COLLECTION OF NEAR ISOGENIC LINES OF MELON

2007 ◽  
pp. 309-317
Author(s):  
J. Obando ◽  
J.A. Martínez ◽  
M.J. Roca ◽  
A. Alarcón ◽  
J.P. Fernández-Trujillo ◽  
...  
Keyword(s):  
Postharvest Quality ◽  
Quality Traits ◽  
Near Isogenic Lines ◽  
Isogenic Lines

scholarly journals Mapping Fruit Susceptibility to Postharvest Physiological Disorders and Decay Using a Collection of Near-isogenic Lines of Melon

2007 ◽  
Vol 132 (5) ◽  
pp. 739-748 ◽  
Author(s):  
Juan Pablo Fernández-Trujillo ◽  
Javier Obando ◽  
Juan Antonio Martínez ◽  
Antonio Luis Alarcón ◽  
Iban Eduardo ◽  
...  
Keyword(s):  
Shelf Life ◽  
Chilling Injury ◽  
Placental Tissue ◽  
Quality Trait ◽  
Quality Traits ◽  
Near Isogenic Lines ◽  
Isogenic Lines ◽  
Life Traits ◽  
Fusarium Rot ◽  
Fruit Flavor

Melon (Cucumis melo L.) is a perishable fruit that requires refrigeration to extend its shelf life. Postharvest behavior differs substantially among melon varieties due to genetic differences. In this work, we use a collection of near-isogenic lines (NILs) derived from a cross between the Spanish cultivar Piel de Sapo (PS) and an exotic Korean accession ‘Shongwan Charmi’ [SC (PI161375)], each of them with a single introgressed region from SC into the PS background, to detect and map quantitative trait loci (QTLs) involved in postharvest life traits, such as total losses, water-soaking, necrosis of the placental tissue, chilling injury (CI), decay, fruit over-ripening, flesh browning, hollow flesh disorder, and flavor loss during storage. Fruit were examined at harvest and after 35 days at 8 °C. Three QTLs induced desirable quality traits: flv4.1 reduced the loss of fruit flavor after refrigeration, tl8.1 reduced total losses, and fus8.4 reduced the susceptibility to fusarium rot (Fusarium Link). Another 11 QTLs produced a detrimental effect on other quality traits. The NIL population was useful for dissecting complex, difficult-to-measure pre- and postharvest disorder traits of different degrees of development and for investigating flavor loss during storage. Further studies with the QTLs described herein will shed light on the genetic control of melon shelf life and help breeders who are interested in this fruit quality trait.

scholarly journals Marker Assisted Development and Characterization of Herbicide Tolerant Near Isogenic Lines of a Mega Basmati Rice Variety, “Pusa Basmati 1121”

Rice ◽  
2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Nitasha Grover ◽  
Aruna Kumar ◽  
Ashutosh Kumar Yadav ◽  
S. Gopala Krishnan ◽  
Ranjith Kumar Ellur ◽  
...  
Keyword(s):  
Genetic Background ◽  
Cooking Quality ◽  
Rice Variety ◽  
Basmati Rice ◽  
Recurrent Parent ◽  
Quality Traits ◽  
Near Isogenic Lines ◽  
Isogenic Lines ◽  
Herbicide Tolerant ◽  
Grain And Cooking Quality

Abstract Background Direct-seeded rice (DSR) is a potential technology for sustainable rice farming as it saves water and labor. However, higher incidence of weed under DSR limits productivity. Therefore, there is a need to develop herbicide tolerant (HT) rice varieties. Results We used marker assisted backcross breeding (MABB) to transfer a mutant allele of Acetohydroxy acid synthase (AHAS) gene, which confers tolerance to imidazolinone group of herbicides from the donor parent (DP) “Robin” into the genetic background of an elite popular Basmati rice variety, Pusa Basmati 1121 (PB 1121). Foreground selection was done using the AHAS gene linked Simple Sequence Repeat (SSR) marker RM6844 and background selection was performed using 112 genome-wide SSR markers polymorphic between PB 1121 and Robin. Phenotypic selection for agronomic, Basmati grain and cooking quality traits in each generation was carried out to improve the recovery of recurrent parent phenome (RPP). Finally, a set of 12 BC4F4 near isogenic lines (NILs), with recurrent parent genome (RPG) recovery ranging from 98.66 to 99.55% were developed and evaluated. PB 1121-HT NILs namely 1979-14-7-33-99-10, 1979-14-7-33-99-15 and 1979-14-7-33-99-66 were found superior to PB 1121 in yield with comparable grain and cooking quality traits and herbicide tolerance similar to Robin. Conclusion Overall, the present study reports successful development of HT NILs in the genetic background of popular Basmati rice variety, PB 1121 by introgression of mutated AHAS allele. This is the first report on the development of HT Basmati rice. Superior NILs are being evaluated in the national Basmati trials, the release of which is likely to provide a viable option for the adoption of DSR technology in Basmati rice cultivation.

scholarly journals Marker assisted development and characterization of herbicide tolerant Near Isogenic Lines of a mega Basmati rice variety, “Pusa Basmati 1121”

2020 ◽  
Author(s):  
Nitasha Grover ◽  
Aruna Kumar ◽  
Ashutosh Kumar Yadav ◽  
Gopala Krishnan S. ◽  
Ranjith Kumar Ellur ◽  
...  
Keyword(s):  
Genetic Background ◽  
Cooking Quality ◽  
Rice Variety ◽  
Basmati Rice ◽  
Recurrent Parent ◽  
Quality Traits ◽  
Near Isogenic Lines ◽  
Isogenic Lines ◽  
Herbicide Tolerant ◽  
Grain And Cooking Quality

Abstract Background Direct-seeded rice (DSR) is a potential technology for sustainable rice farming as it saves water and labor. However, higher incidence of weed under DSR limits productivity. Therefore, there is a need to develop herbicide tolerant (HT) rice varieties. Results We used marker assisted backcross breeding (MABB) to transfer a mutant allele of Acetohydroxy acid synthase ( AHAS ) gene, which confers tolerance to imidazolinone group of herbicides from the donor parent (DP) “Robin” into the genetic background of an elite popular Basmati rice variety Pusa Basmati 1121 (PB 1121). Foreground selection was done using the AHAS gene linked Simple Sequence Repeat (SSR) marker RM6844 and background selection was performed using 112 genome-wide SSR markers polymorphic between PB 1121 and Robin. Phenotypic selection for agronomic, Basmati grain and cooking quality traits in each generation was carried out to improve the recovery of recurrent parent phenome (RPP). Finally, a set of 12 BC 4 F 4 near isogenic lines (NILs), with recurrent parent genome (RPG) recovery ranging from 98.66 to 99.55% were developed and evaluated. PB 1121-HT NILs namely 1979-14-7-33-99-10, 1979-14-7-33-99-15 and 1979-14-7-33-99-66 were found superior to PB 1121 in yield with comparable grain and cooking quality traits and herbicide tolerance similar to Robin. Conclusion Overall, the present study reports successful development of HT NILs in the genetic background of popular Basmati rice variety PB 1121 by introgression of mutated AHAS allele. This is the first report on the development of HT Basmati rice. Superior NILs are being evaluated in the national Basmati trials, the release of which is likely to provide a viable option for the adoption of DSR technology in Basmati rice cultivation.

scholarly journals Marker assisted development and characterization of non-GM herbicide tolerant Near Isogenic Lines of a mega Basmati rice variety, “Pusa Basmati 1121”

2020 ◽  
Author(s):  
Nitasha Grover ◽  
Aruna Kumar ◽  
Ashutosh Kumar Yadav ◽  
Gopala Krishnan S. ◽  
Ranjith Kumar Ellur ◽  
...  
Keyword(s):  
Genetic Background ◽  
Cooking Quality ◽  
Rice Variety ◽  
Basmati Rice ◽  
Recurrent Parent ◽  
Quality Traits ◽  
Near Isogenic Lines ◽  
Isogenic Lines ◽  
Herbicide Tolerant ◽  
Grain And Cooking Quality

Abstract Background Direct-seeded rice (DSR) is a potential technology for sustainable rice farming as it saves water and labor. However, higher incidence of weed under DSR limits productivity. Therefore, there is a need to develop herbicide tolerant (HT) rice varieties. Results We used marker assisted backcross breeding (MABB) to transfer a mutant allele of Acetohydroxy acid synthase (AHAS) gene, which confers tolerance to imidazolinone group of herbicides from the donor parent (DP) “Robin” into the genetic background of an elite popular Basmati rice variety Pusa Basmati 1121 (PB 1121). Foreground selection was done using the AHAS gene linked Simple Sequence Repeat (SSR) marker RM6844 and background selection was performed using 112 genome-wide SSR markers polymorphic between PB 1121 and Robin. Phenotypic selection for agronomic, Basmati grain and cooking quality traits in each generation was carried out to improve the recovery of recurrent parent phenome (RPP). Finally, a set of 12 BC4F4 near isogenic lines (NILs), with recurrent parent genome (RPG) recovery ranging from 98.66 to 99.55% were developed and evaluated. PB 1121-HT NILs namely 1979-14-7-33-99-10, 1979-14-7-33-99-15 and 1979-14-7-33-99-66 were found superior to PB 1121 in yield with comparable grain and cooking quality traits and herbicide tolerance similar to Robin. Conclusion Overall, the present study reports successful development of non-GM HT NILs in the genetic background of popular Basmati rice variety PB 1121 by introgression of mutated AHAS allele. This is the first report of the development of HT rice in India. Superior NILs are being evaluated in the national Basmati trials, the release of which is likely to provide a viable option for the adoption of DSR technology in Basmati rice cultivation.

scholarly journals Primary metabolite contents are correlated with seed protein and oil traits in near-isogenic lines of soybean

2019 ◽  
Vol 7 (5) ◽  
pp. 651-659 ◽  
Author(s):  
Jie Wang ◽  
Pengfei Zhou ◽  
Xiaolei Shi ◽  
Na Yang ◽  
Long Yan ◽  
...  
Keyword(s):  
Seed Protein ◽  
Near Isogenic Lines ◽  
Primary Metabolite ◽  
Isogenic Lines

Comparative analysis of genetic background in eight near-isogenic wheat lines with different H genes conferring resistance to Hessian fly

Genome ◽  
2011 ◽  
Vol 54 (1) ◽  
pp. 81-89 ◽  
Author(s):  
S. S. Xu ◽  
C. G. Chu ◽  
M. O. Harris ◽  
C. E. Williams
Keyword(s):  
Genetic Background ◽  
Genetic Similarity ◽  
Triticum Aestivum L ◽  
Hessian Fly ◽  
Pedigree Analysis ◽  
Recurrent Parent ◽  
Linkage Drag ◽  
Near Isogenic Lines ◽  
Isogenic Lines ◽  
H Gene

Near-isogenic lines (NILs) are useful for plant genetic and genomic studies. However, the strength of conclusions from such studies depends on the similarity of the NILs’ genetic backgrounds. In this study, we investigated the genetic similarity for a set of NILs developed in the 1990s to study gene-for-gene interactions between wheat ( Triticum aestivum L.) and the Hessian fly ( Mayetiola destructor (Say)), an important pest of wheat. Each of the eight NILs carries a single H resistance gene and was created by successive backcrossing for two to six generations to susceptible T. aestivum ‘Newton’. We generated 256 target region amplification polymorphism (TRAP) markers and used them to calculate genetic similarity, expressed by the Nei and Li (NL) coefficient. Six of the NILs (H3, H5, H6, H9, H11, and H13) had the highly uniform genetic background of Newton, with NL coefficients from 0.97 to 0.99. However, genotypes with H10 or H12 were less similar to Newton, with NL coefficients of 0.86 and 0.93, respectively. Cluster analysis based on NL coefficients and pedigree analysis showed that the genetic similarity between each of the NILs and Newton was affected by both the number of backcrosses and the genetic similarity between Newton and the H gene donors. We thus generated an equation to predict the number of required backcrosses, given varying similarity of donor and recurrent parent. We also investigated whether the genetic residues of the donor parents that remained in the NILs were related to linkage drag. By using a complete set of ‘Chinese Spring’ nullisomic-tetrasomic lines, one third of the TRAP markers that showed polymorphism between the NILs and Newton were assigned to a specific chromosome. All of the assigned markers were located on chromosomes other than the chromosome carrying the H gene, suggesting that the genetic residues detected in this study were not due to linkage drag. Results will aid in the development and use of near-isogenic lines for studies of the functional genomics of wheat.

scholarly journals The Impact of Climate Change on the Resistance of Rice Near-Isogenic Lines with Resistance Genes Against Brown Planthopper

Rice ◽  
2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Yun-Hung Kuang ◽  
Yu-Fu Fang ◽  
Shau-Ching Lin ◽  
Shin-Fu Tsai ◽  
Zhi-Wei Yang ◽  
...  
Keyword(s):  
Climate Change ◽  
Resistance Genes ◽  
Environmental Changes ◽  
Gene Pyramiding ◽  
Brown Planthopper ◽  
Inhibitory Effect ◽  
Near Isogenic Lines ◽  
Impact Of Climate Change ◽  
Isogenic Lines ◽  
The Impact

Abstract Background The impact of climate change on insect resistance genes is elusive. Hence, we investigated the responses of rice near-isogenic lines (NILs) that carry resistance genes against brown planthopper (BPH) under different environmental conditions. Results We tested these NILs under three environmental settings (the atmospheric temperature with corresponding carbon dioxide at the ambient, year 2050 and year 2100) based on the Intergovernmental Panel on Climate Change prediction. Comparing between different environments, two of nine NILs that carried a single BPH-resistant gene maintained their resistance under the environmental changes, whereas two of three NILs showed gene pyramiding with two maintained BPH resistance genes despite the environmental changes. In addition, two NILs (NIL-BPH17 and NIL-BPH20) were examined in their antibiosis and antixenosis effects under these environmental changes. BPH showed different responses to these two NILs, where the inhibitory effect of NIL-BPH17 on the BPH growth and development was unaffected, while NIL-BPH20 may have lost its resistance during the environmental changes. Conclusion Our results indicate that BPH resistance genes could be affected by climate change. NIL-BPH17 has a strong inhibitory effect on BPH feeding on phloem and would be unaffected by environmental changes, while NIL-BPH20 would lose its ability during the environmental changes.

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