scholarly journals Algorithms for automated assignment of solution-state and solid-state protein NMR spectra.

2017 ◽  
Author(s):  
Andrey Smelter
2020 ◽  
Vol 27 ◽  
Author(s):  
Minseon Kim ◽  
Soyeon Jo ◽  
Ji-Ho Jeong ◽  
Yongae Kim

Background: Obesity has emerged as a global public health challenge associated with increased risk of hyperlipidemia and hypertension. It contributes to high sympathetic activity and increased catecholamine levels. The hypothalamic melanocortin system is known to regulate the energy homeostasis. The role of melanocortin 4 receptor (MC4R) has been demonstrated pharmacologically and in animal studies, which showed that severe obesity in MC4R knockout mice was caused by increased food intake and decreased energy consumption. Over 70 multiple different mis-sense and nonsense mutations in hMC4R have been found at a high frequency of 2-8% in severe early onset or hereditary obesity. The single amino acid variation (D90N) located in the second transmembrane domain (TM2) of MC4R results in accelerated growth and childhood onset obesity. Interestingly, the functional characterization of D90N hMC4R mutant TM2 (m-hMC4R-TM2) revealed normal cell surface expression and binding with agonist similar to the hMC4R wild-type TM2 (wt-hMC4R-TM2) but loss of signal transduction mediated via Gs/adenylyl cyclase activation. It is essential to delineate the three-dimensional structure of MC4Rs in order to elucidate their functional aspects. Objective: In this study, we demonstrate the optimized expression and isolation of wt/m-hMC4R-TM2 proteins under different chemical cleavage reaction times and purification procedures via SDS precipitation. The solidstate NMR spectroscopy was carried out to study the structure of wt/m-hMC4R-TM2 protein in the anisotropic phospholipid bicelles. Methods: The KSI-wt/m-hMC4R-TM2 fusion proteins developed in cell culture with LB medium. In order to isolate the expressed fusion protein from the cell, ultrasonication, Ni-NTA affinity chromatography, dialysis, and lyophilization techniques were used. Then, to obtain a protein with higher purity and higher yield, the CNBr chemical cleavage time was subdivided into 30 minutes, 1 h, 2 h, 3 h, 4 h, 5 h. Purification process was performed using FPLC, and 100 mM KCl and dialysis were used to remove the SDS. CD spectrometer, MALDITOF, solution-state NMR, and solid-state NMR were used to confirmed purity and structure of the wt/mhMC4R-TM2. Results: The precipitation method was used to remove the SDS bound to proteins as KCl-SDS. We optimized the 2 h cleavage reaction times for both wt-hMC4R-TM2 and m-hMC4R-TM2 depending on the purity based on mass spectra and 1H-15N HSQC spectra and the yield after final purification. The 1D 1H-15N CP (Cross polarization) solid-state NMR spectra suggest that the wt/m-hMC4R-TM2 undergo rotational diffusion around a perpendicular axis along the bilayer normal. Conclusion: We expressed wt/m-hMC4R-TM2 in E.coli and optimized the isolation and purification process, especially CNBr chemical cleavage time. The efficiency of KCl-SDS precipitation was confirmed via MALDITOF MS and the pure proteins obtained using this method were characterized by CD spectroscopy and solutionstate NMR. The results of 1H-15N HSQC spectra in solution-state NMR also show the probability for structural studies. The 1D 1H-15N CP solid-state NMR spectra indicate that most of the residues in both the wt/m-hMC4RTM2 peptides are integrated into the membrane.


1994 ◽  
Vol 26 (3) ◽  
pp. 267-271 ◽  
Author(s):  
Koichi Hatada ◽  
Koichi Ute ◽  
Hiroshi Okuda ◽  
F W Hein Kruger ◽  
Otto Vogl

1992 ◽  
Vol 70 (12) ◽  
pp. 2914-2921 ◽  
Author(s):  
Nathalie Dufour ◽  
Anne-Marie Lebuis ◽  
Marie-Claude Corbeil ◽  
André L. Beauchamp ◽  
Pascal Dufour ◽  
...  

Complexes of the types [CH3Hg(aza)], [CH3Hg(Haza)]X, and [(CH3Hg)2(aza)]X are obtained by reacting CH3HgOH and/or CH3HgX (X = NO3, ClO4) with 7-azaindole (Haza). The weakly acidic N1-H proton on the pyrrole ring is displaced by the hydroxide, whereas the perchlorate and nitrate salts lead to CH3Hg+ coordination to the N7 lone pair on the pyridine ring. Detailed analysis of the infrared spectra of the complexes and their N-deuterated derivatives provides diagnostic regions for eventual prediction of the coordination mode in other systems. All compounds are characterized by means of 1H, 13C, and 199Hg NMR spectra in DMSO solution and solid-state CP-MAS 13C spectra. Comparison of the solution and solid-state 13C spectra show that the species present in the solids remain undissociated in DMSO. Each type of complex can be identified from a characteristic pattern of large displacements of the ligand 13C signals. The 1H spectra are less informative because substitution of the N1-H proton by CH3Hg+ induces only minor shifts. Metal solvation appears to have a major influence on the 13C and 199Hg chemical shifts of the CH3Hg+ groups.


2010 ◽  
Vol 88 (2) ◽  
pp. 143-155 ◽  
Author(s):  
David S. Libich ◽  
Mumdooh A.M. Ahmed ◽  
Ligang Zhong ◽  
Vladimir V. Bamm ◽  
Vladimir Ladizhansky ◽  
...  

The classic 18.5 kDa isoform of myelin basic protein (MBP) is central to maintaining the structural homeostasis of the myelin sheath of the central nervous system. It is an intrinsically disordered, promiscuous, multifunctional, peripheral membrane protein, whose conformation adapts to its particular environment. Its study requires the selective and complementary application of diverse approaches, of which solution and solid-state NMR spectroscopy are the most powerful to elucidate site-specific features. We review here several recent solution and solid-state NMR spectroscopic studies of 18.5 kDa MBP, and the induced partial disorder-to-order transitions that it has been demonstrated to undergo when complexed with calmodulin, actin, and phospholipid membranes.


1996 ◽  
Vol 86-88 ◽  
pp. 535-538 ◽  
Author(s):  
Masanari Takahashi ◽  
Hiroshi Toyuki ◽  
Masahiro Tatsumisago ◽  
Tsutomu Minami

2003 ◽  
Vol 125 (9) ◽  
pp. 2382-2383 ◽  
Author(s):  
Nobuhisa Shimba ◽  
Alan S. Stern ◽  
Charles S. Craik ◽  
Jeffrey C. Hoch ◽  
Volker Dötsch

2008 ◽  
Vol 42 (2) ◽  
pp. 87-97 ◽  
Author(s):  
Doroteya K. Staykova ◽  
Jonas Fredriksson ◽  
Wolfgang Bermel ◽  
Martin Billeter
Keyword(s):  

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