Functional species pool framework to test for biotic effects on community assembly

Ecology ◽  
2012 ◽  
Vol 93 (10) ◽  
pp. 2263-2273 ◽  
Author(s):  
Francesco de Bello ◽  
Jodi N. Price ◽  
Tamara Münkemüller ◽  
Jaan Liira ◽  
Martin Zobel ◽  
...  
2019 ◽  
Author(s):  
Pierre Denelle ◽  
Cyrille Violle ◽  
François Munoz

AbstractUnderstanding the imprint of environmental filtering on community assembly along environmental gradients is a key objective of trait-gradient analyses. Depending on local constraints, this filtering generally entails that species departing from an optimum trait value have lower abundances in the community. The Community-Weighted Mean (CWM) and Variance (CWV) of trait values are then expected to depict the optimum and intensity of filtering, respectively. However, the trait distribution within the regional species pool and its limits can also affect local CWM and CWV values apart from the effect of environmental filtering. The regional trait range limits are more likely to be reached in communities at the extremes of environmental gradients. Analogous to the mid-domain effect in biogeography, decreasing CWV values in extreme environments can then represent the influence of regional trait range limits rather than stronger filtering in the local environment. We name this effect the “Trait-Gradient Boundary Effect” (TGBE). First, we use a community assembly framework to build simulated communities along a gradient from a species pool and environmental filtering with either constant or varying intensity while accounting for immigration processes. We demonstrate the significant influence of TGBE, in parallel to environmental filtering, on CWM and CWV at the extremes of the environmental gradient. We provide a statistical tool based on Approximate Bayesian Computation to decipher the respective influence of local environmental filtering and regional trait range limits. Second, as a case study, we reanalyze the functional composition of alpine plant communities distributed along a gradient of snow cover duration. We show that leaf trait convergence found in communities at the extremes of the gradient reflect an influence of trait range limits rather than stronger environmental filtering. These findings challenge correlative trait-environment relationships and call for more explicitly identifying the mechanisms responsible of trait convergence/divergence along environmental gradients.


2019 ◽  
pp. 231-246
Author(s):  
Gary G. Mittelbach ◽  
Brian J. McGill

There is perhaps no more fundamental question in ecology than what determines the number and kinds of species found in a community and their relative abundances. This chapter lays out a powerful approach to answering this question, based on the concepts of a regional species pool and environmental filters. The species pool is the set of species that could potentially colonize a local site or community. Of these potential colonists, some species are limited in their ability to disperse to site, some are limited by their ability to survive the abiotic environment, and some are limited by their interactions with other species. These “filters” act individually or in concert, and the functional traits of species determine their success in passing through these filters to colonize a local site. There is growing empirical evidence that both abiotic and biotic processes select for specific functional traits. Focusing on the functional traits of species may lead to rules of community assembly that are general and help unify a variety of more specific theories.


Ecology ◽  
2020 ◽  
Author(s):  
Christopher P. Catano ◽  
Emily Grman ◽  
Eric Behrens ◽  
Lars A. Brudvig

2020 ◽  
Author(s):  
Decio T. Correa ◽  
David Rodriguez ◽  
Carine Emer ◽  
Daniel Saenz ◽  
Cory K. Adams ◽  
...  

AbstractThe assembly of local communities is likely to reflect the effects of local environmental factors associated with filters that act at larger spatial scales. Dissecting these multiscale effects remains a timely challenge that is particularly important for host-associated microbiomes. We investigated the relative roles of local selection (due to host species identity) and regional effects (due to water body identity) on the community structure of bacteria in the gut of tadpoles from three biogeographic areas and used graph theory and metanetwork approaches to explore and illustrate the distribution of bacteria across different ponds. The pond of origin, which represents a regional species pool of bacteria, was in general more important in shaping the gut microbiome of tadpoles than host species identity. The resulting metanetworks are modular and indicate relatively few species of bacteria occurring in more than one pond. Thus, each pond represents a relatively distinct species pool of bacteria available for community assembly of the tadpole microbiomes. Our findings indicate that microbiome community assembly in amphibian larvae, as in many other communities, is a multiscale process with important regional effects that constrain how local (i.e. host-dependent) filters act to influence microbiome community composition.


2019 ◽  
Author(s):  
Coline Deveautour ◽  
Suzanne Donn ◽  
Sally Power ◽  
Kirk Barnett ◽  
Jeff Powell

Future climate scenarios predict changes in rainfall regimes. These changes are expected to affect plants via effects on the expression of root traits associated with water and nutrient uptake. Associated microorganisms may also respond to these new precipitation regimes, either directly in response to changes in the soil environment or indirectly in response to altered root trait expression. We characterised arbuscular mycorrhizal (AM) fungal communities in an Australian grassland exposed to experimentally altered rainfall regimes. We used Illumina sequencing to assess the responses of AM fungal communities associated with four plant species sampled in different watering treatments and evaluated the extent to which shifts were associated with changes in root traits. We observed that altered rainfall regimes affected the composition but not the richness of the AM fungal communities, and we found distinctive communities in the increased rainfall treatment. We found no evidence of altered rainfall regime effects via changes in host physiology because none of the studied traits were affected by changes in rainfall. However, specific root length was observed to correlate with AM fungal richness, while concentrations of phosphorus and calcium in root tissue and the proportion of root length allocated to fine roots were correlated to community composition. Our study provides evidence that climate change and its effects on rainfall may influence AM fungal community assembly, as do plant traits related to plant nutrition and water uptake. We did not find evidence that host responses to altered rainfall drive AM fungal community assembly in this grassland ecosystem.


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