scholarly journals Automatic Segmentation of Prostate Magnetic Resonance Imaging Using Generative Adversarial Networks

2020 ◽  
Author(s):  
Wei Wang ◽  
Mingang Wang ◽  
Xiaofen Wu ◽  
Xie Ding ◽  
Xuexiang Cao ◽  
...  

Abstract Background: Automatic and detailed segmentation of the prostate using magnetic resonance imaging (MRI) plays an essential role in prostate imaging diagnosis. However, the complexity of the prostate gland hampers accurate segmentation from other tissues. Thus, we propose the automatic prostate segmentation method SegDGAN, which is based on a classic generative adversarial network (GAN) model. Methods: The proposed method comprises a fully convolutional generation network of densely connected blocks and a critic network with multi-scale feature extraction. In these computations, the objective function is optimized using mean absolute error and the Dice coefficient, leading to improved accuracy of segmentation results and correspondence with the ground truth. The common and similar medical image segmentation networks U-Net, fully convolution network, and SegAN were selected for qualitative and quantitative comparisons with SegDGAN using a 220-patient dataset and the publicly available dataset PROMISE12. The commonly used segmentation evaluation metrics Dice similarity coefficient (DSC), volumetric overlap error (VOE), average surface distance (ASD), and Hausdorff distance (HD) were also used to compare the accuracy of segmentation between these methods. Results: SegDGAN achieved the highest DSC value of 91.66%, the lowest VOE value of 23.47% and the lowest ASD values of 0.46 mm with the clinical dataset. In addition, the highest DCS value of 88.69%, the lowest VOE value of 23.47%, the lowest ASD value of 0.83 mm, and the lowest HD value of 11.40 mm was achieved with the PROMISE12 dataset. Conclusions: Our experimental results show that the SegDGAN model outperforms other segmentation methods Keywords: Automatic segmentation, Generative adversarial networks, Magnetic resonance imaging, Prostate

2019 ◽  
Author(s):  
Wei Wang ◽  
Mingang Wang ◽  
Xiaofen Wu ◽  
Xie Ding ◽  
Xuexiang Cao ◽  
...  

Abstract Background: Automatic and detailed segmentation of the prostate using magnetic resonance imaging (MRI) plays an essential role in prostate imaging diagnosis. However, the complexity of the prostate gland hampers accurate segmentation from other tissues. Thus, we propose the automatic prostate segmentation method SegDGAN, which is based on a classic generative adversarial network (GAN) model. Methods: The proposed method comprises a fully convolutional generation network of densely connected blocks and a critic network with multi-scale feature extraction. In these computations, the objective function is optimized using mean absolute error and the Dice coefficient, leading to improved accuracy of segmentation results and correspondence with the ground truth. The common and similar medical image segmentation networks U-Net, fully convolution network, and SegAN were selected for qualitative and quantitative comparisons with SegDGAN using a 220-patient dataset and the publicly available dataset PROMISE12. The commonly used segmentation evaluation metrics Dice similarity coefficient (DSC), volumetric overlap error (VOE), average surface distance (ASD), and Hausdorff distance (HD) were also used to compare the accuracy of segmentation between these methods. Results: SegDGAN achieved the highest DSC value of 91.66%, the lowest VOE value of 23.47% and the lowest ASD values of 0.46 mm with the clinical dataset. In addition, the highest DCS value of 88.69%, the lowest VOE value of 23.47%, the lowest ASD value of 0.83 mm, and the lowest HD value of 11.40 mm was achieved with the PROMISE12 dataset. Conclusions: Our experimental results show that the SegDGAN model outperforms other segmentation methods Keywords: Automatic segmentation, Generative adversarial networks, Magnetic resonance imaging, Prostate


2021 ◽  
Vol 11 (2) ◽  
pp. 782 ◽  
Author(s):  
Albert Comelli ◽  
Navdeep Dahiya ◽  
Alessandro Stefano ◽  
Federica Vernuccio ◽  
Marzia Portoghese ◽  
...  

Magnetic Resonance Imaging-based prostate segmentation is an essential task for adaptive radiotherapy and for radiomics studies whose purpose is to identify associations between imaging features and patient outcomes. Because manual delineation is a time-consuming task, we present three deep-learning (DL) approaches, namely UNet, efficient neural network (ENet), and efficient residual factorized convNet (ERFNet), whose aim is to tackle the fully-automated, real-time, and 3D delineation process of the prostate gland on T2-weighted MRI. While UNet is used in many biomedical image delineation applications, ENet and ERFNet are mainly applied in self-driving cars to compensate for limited hardware availability while still achieving accurate segmentation. We apply these models to a limited set of 85 manual prostate segmentations using the k-fold validation strategy and the Tversky loss function and we compare their results. We find that ENet and UNet are more accurate than ERFNet, with ENet much faster than UNet. Specifically, ENet obtains a dice similarity coefficient of 90.89% and a segmentation time of about 6 s using central processing unit (CPU) hardware to simulate real clinical conditions where graphics processing unit (GPU) is not always available. In conclusion, ENet could be efficiently applied for prostate delineation even in small image training datasets with potential benefit for patient management personalization.


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