scholarly journals Genome-wide Identification and Function Analysis of HMAD Gene Family in Cotton (Gossypium Spp.)

2020 ◽  
Author(s):  
Qinqin Wang ◽  
Xuke Lu ◽  
Xiugui Chen ◽  
Lanjie Zhao ◽  
Mingge Han ◽  
...  
Keyword(s):  
Heavy Metal ◽  
Gene Family ◽  
Metal Toxicity ◽  
Crop Production ◽  
Developmental Stages ◽  
Function Analysis ◽  
Heavy Metal Toxicity ◽  
Conserved Sequence ◽  
Genome Wide ◽  
And Function

Abstract Background: Soil salinized and heavy metal toxicity has become a major threat to sustainable crop production worldwide. Previous studies revealed that halophytes were supposed to tolerate other stress including heavy metal toxicity. Though HMAD (heavy-metal-associated domain) was reported to play various important functions in different plants, little is known in Gossypium.Results: A total of 169 G. hirsutum genes were identified belonging to the HMAD gene family and divided into five classes. Additionally, 84, 76 and 159 HMAD genes were identified in each G. arboreum, G. raimondii and G. barbadense, respectively. Furthermore, conserved sequence analysis found the conserved catalytic center containing an anion binding (CXXC) box. The HMAD gene family showed a differential expression levels among different tissues and developmental stages in G. hirsutum with the different cis-elements and transcription factor binding sites (TFBS) for abiotic stress.Conclusions: Current study provides important information about HMAD genes under salt-stress in Gossypium genome, which would be useful to understand its putative functions in different species of cotton.

scholarly journals Genome-wide identification and function analysis of HMAD gene family in cotton (Gossypium spp.)

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Qinqin Wang ◽  
Xuke Lu ◽  
Xiugui Chen ◽  
Lanjie Zhao ◽  
Mingge Han ◽  
...  
Keyword(s):  
Heavy Metal ◽  
Abiotic Stress ◽  
Gene Family ◽  
Metal Toxicity ◽  
Crop Production ◽  
Function Analysis ◽  
Soil Salinization ◽  
Heavy Metal Toxicity ◽  
Phylogenetic Tree Analysis ◽  
Conserved Sequence

Abstract Background The abiotic stress such as soil salinization and heavy metal toxicity has posed a major threat to sustainable crop production worldwide. Previous studies revealed that halophytes were supposed to tolerate other stress including heavy metal toxicity. Though HMAD (heavy-metal-associated domain) was reported to play various important functions in Arabidopsis, little is known in Gossypium. Results A total of 169 G. hirsutum genes were identified belonging to the HMAD gene family with the number of amino acids ranged from 56 to 1011. Additionally, 84, 76 and 159 HMAD genes were identified in each G. arboreum, G. raimondii and G. barbadense, respectively. The phylogenetic tree analysis showed that the HMAD gene family were divided into five classes, and 87 orthologs of HMAD genes were identified in four Gossypium species, such as genes Gh_D08G1950 and Gh_A08G2387 of G. hirsutum are orthologs of the Gorai.004G210800.1 and Cotton_A_25987 gene in G. raimondii and G. arboreum, respectively. In addition, 15 genes were lost during evolution. Furthermore, conserved sequence analysis found the conserved catalytic center containing an anion binding (CXXC) box. The HMAD gene family showed a differential expression levels among different tissues and developmental stages in G. hirsutum with the different cis-elements for abiotic stress. Conclusions Current study provided important information about HMAD family genes under salt-stress in Gossypium genome, which would be useful to understand its putative functions in different species of cotton.

Genome-wide identification, phylogeny and function analysis of GRAS gene family in Dendrobium catenatum (Orchidaceae)

Gene ◽  
2019 ◽  
Vol 705 ◽  
pp. 5-15 ◽  
Author(s):  
Xu Zeng ◽  
Hong Ling ◽  
Xiaomei Chen ◽  
Shunxing Guo
Keyword(s):  
Gene Family ◽  
Function Analysis ◽  
Genome Wide ◽  
And Function ◽  
Gras Gene

HSP40 gene family in pearl oyster Pinctada fucata martensii: Genome-Wide identification and function analysis

2019 ◽  
Vol 93 ◽  
pp. 904-910
Author(s):  
Qingheng Wang ◽  
Wenlu Wei ◽  
Ya Liu ◽  
Zhe Zheng ◽  
Xiaodong Du ◽  
...  
Keyword(s):  
Gene Family ◽  
Function Analysis ◽  
Pearl Oyster ◽  
Pinctada Fucata ◽  
Genome Wide ◽  
And Function

Biochar as a tool for effective management of drought and heavy metal toxicity

Chemosphere ◽  
2021 ◽  
Vol 271 ◽  
pp. 129458
Author(s):  
Sheikh Mansoor ◽  
Navneet Kour ◽  
Sweeta Manhas ◽  
Sheikh Zahid ◽  
Owais Ali Wani ◽  
...  
Keyword(s):  
Heavy Metal ◽  
Metal Toxicity ◽  
Heavy Metal Toxicity ◽  
Effective Management

Inhibition of methanogenesis in pure cultures by ammonia, fatty acids, and heavy metals, and protection against heavy metal toxicity by sewage sludge

1987 ◽  
Vol 33 (6) ◽  
pp. 551-554 ◽  
Author(s):  
Ken F. Jarrell ◽  
Michelle Saulnier ◽  
Art Ley
Keyword(s):  
Heavy Metals ◽  
Fatty Acids ◽  
Heavy Metal ◽  
Sewage Sludge ◽  
Metal Toxicity ◽  
Heavy Metal Toxicity ◽  
Methanosarcina Barkeri ◽  
Methanospirillum Hungatei ◽  
Nickel Zinc ◽  
Pure Cultures

The effect of ammonium chloride, sodium butyrate, sodium propionate, and the heavy metals nickel, zinc, and copper on methanogenesis by pure cultures of Methanospirillum hungatei, Methanosarcina barkeri, Methanobacterium thermoautotrophicum, and Methanobacterium formicicum at pH 6.5 was studied. The latter three strains were resistant to > 60 g/L of the volatile fatty acids and to > 10 g/L of NH3 N. Methanospirillum hungatei was somewhat more sensitive with 50% inhibition of methanogenesis occurring at 4.2 g/L NH3 N, 27 g/L butyrate, and 41 g/L propionate. All strains were very sensitive to both copper (1–5 mg/L) and zinc (1–10 mg/L), but much more resistant to nickel. Zinc and copper concentrations 30 to 270 times higher were required to cause inhibition of Msp. hungatei incubated in sewage sludge compared with buffer, indicating a strong protective environment was afforded the methanogens against heavy metal toxicity in the sludge.

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