scholarly journals Integrative Taxonomy and Molecular Phylogeny of Three Poorly Known Tintinnine Ciliates, with the Establishment of a New Genus (Protozoa; Ciliophora; Oligotrichea)

2020 ◽  
Author(s):  
Rui Wang ◽  
Yang Bai ◽  
Tao Hu ◽  
Dapeng Xu ◽  
Toshikazu Suzuki ◽  
...  
Keyword(s):  
Type Species ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Integrative Taxonomy ◽  
Habitat Characteristics ◽  
Lsu Rdna ◽  
Rdna Sequences ◽  
Long Time ◽  
Ciliary Tuft

Abstract Background: The taxonomic classification of the suborder Tintinnina Kofoid & Campbell, 1929, a species-rich group of planktonic ciliated protozoans with characteristic lorica, is very ambiguous for a long time largely due to the lack of cytological and molecular data for most species. Among the group, Tintinnopsis is the largest, most widespread, and most taxonomically complex genus with about 170 species occurring in nearshore waters. The highly polyphyletic status of this speciose genus has also been revealed by previous researches.Results: We here first documented the live morphology, infraciliature, and molecular data, as well habitat characteristics of three poorly known tintinnine species, viz. Tintinnopsis karajacensis Brandt, 1896, Tintinnopsis gracilis Kofoid & Campbell, 1929, and Tintinnopsis tocantinensis Kofoid & Campbell, 1929, isolated from the coastal waters of China. Based on revelation of the unique cytological feature (the elongated ciliary tuft with densely arranged kinetids in it) in the former two species, which is apparently different from all other Tintinnopsis forms, Antetintinnopsis gen. nov. is thus erected with T. karajacensis designated as the type species. Moreover, these two species are placed in a highly supported clade, which branches away from other Tintinnopsis (including type species, T. beroidea) clades, in the phylogenetic analyses based on SSU rDNA and LSU rDNA sequences, which thus justifies the establishment of the new genus. Meanwhile, two other new combinations were made for Tintinnopsis hemispiralis and T. subacuta.Conclusions: The molecular data adopted here resulted in a well-resolved phylogenetic inference that provided strong evidence that the cytological characters are of valuable taxonomic delimitation for Tintinnina. This study also contributes to the broadening of our understanding of the tintinnine biodiversity and evolution.

scholarly journals Integrative taxonomy and molecular phylogeny of three poorly known tintinnine ciliates, with the establishment of a new genus (Protista; Ciliophora; Oligotrichea)

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Rui Wang ◽  
Yang Bai ◽  
Tao Hu ◽  
Dapeng Xu ◽  
Toshikazu Suzuki ◽  
...  
Keyword(s):  
Phylogenetic Trees ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Integrative Taxonomy ◽  
Habitat Characteristics ◽  
Lsu Rdna ◽  
Molecular Phylogenetic ◽  
Ciliary Tuft

Abstract Background The taxonomic classification of the suborder Tintinnina Kofoid & Campbell, 1929, a species-rich group of planktonic ciliated protistans with a characteristic lorica, has long been ambiguous largely due to the lack of cytological and molecular data for most species. Tintinnopsis is the largest, most widespread, and most taxonomically complex genus within this group with about 170 species occurring in nearshore waters. Previous molecular phylogenetic studies have revealed that Tintinnopsis is polyphyletic. Results Here we document the live morphology, infraciliature, gene sequences, and habitat characteristics of three poorly known tintinnine species, viz. Tintinnopsis karajacensis Brandt, 1896, Tintinnopsis gracilis Kofoid & Campbell, 1929, and Tintinnopsis tocantinensis Kofoid & Campbell, 1929, isolated from the coastal waters of China. Based on a unique cytological feature (i.e., an elongated ciliary tuft with densely arranged kinetids) in the former two species, Antetintinnopsis gen. nov. is erected with Antetintinnopsis hemispiralis (Yin, 1956) comb. nov. (original combination: Tintinnopsis hemispiralis Yin, 1956) designated as the type species. Moreover, A. karajacensis (Brandt, 1896) comb. nov. (original combination: Tintinnopsis karajacensis Brandt, 1896) and A. gracilis (Kofoid & Campbell, 1929) comb. nov. (original combination: Tintinnopsis gracilis Kofoid & Campbell, 1929) are placed in a highly supported clade that branches separately from Tintinnopsis clades in phylogenetic trees based on SSU rDNA and LSU rDNA sequence data, thus supporting the establishment of the new genus. One other species is assigned to Antetintinnopsis gen. nov., namely A. subacuta (Jörgensen, 1899) comb. nov. (original combination Tintinnopsis subacuta Jörgensen, 1899). Conclusions The findings of the phylogenetic analyses support the assertion that cytological characters are taxonomically informative for tintinnines. This study also contributes to the broadening of our understanding of the tintinnine biodiversity and evolution.

Combining morphological and molecular data to classify Laxus sakihariiae sp. n., a new stilbonematine nematode (Nematoda: Desmodoridae) from the coast of Sesoko Island, Japan

Nematology ◽  
2018 ◽  
Vol 20 (1) ◽  
pp. 81-95 ◽  
Author(s):  
Daniel Leduc ◽  
Frederic Sinniger
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Molecular Data ◽  
Diagnostic Feature ◽  
Lsu Rdna ◽  
Rdna Sequences ◽  
Molecular Phylogenetic ◽  
Simple Body ◽  
Morphological And Molecular Data

Because of their relatively simple body plan, the number of morphological characters used to differentiate between closely related nematode genera is often limited. In addition, boundaries among genera sometimes become blurred due to the appearance of new trait combinations as more new species are described. Molecular phylogenetic analyses can address the shortcomings of morphological taxonomy by clarifying relationships among closely related species and genera and can help identify which morphological characters are taxonomically informative. Here, we describeLaxus sakihariiaesp. n. from shallow subtidal sands on Sesoko Island in the Okinawa prefecture, investigate phylogenetic relationships with other stilbonematine species and genera based on SSU rDNA sequences, and provide the first LSU rDNA sequence for the subfamily. The new species can be easily distinguished from all other species of the genus by the presence in the male of subventral and ventral rows of stout and spine-like setae in the pre- and postcloacal regions. This feature suggests affinities with the closely related genusLeptonemella, although the SSU consensus tree clearly shows that the new species forms a monophyletic clade together with the otherLaxusspecies for which sequences are available. The structure of the cephalic capsule inL. sakihariiaesp. n., which consists of a block layer between the median and basal zones of the cephalic cuticle, is consistent with the placement of this species. This trait is not currently used as a diagnostic feature, but our finding suggests that the structure of the cephalic capsule may be taxonomically useful for differentiating between some stilbonematine genera.

scholarly journals Calochaete gen. nov. (Cyanobacteria, Nostocales), a new cyanobacterial type from the “páramo” zone in Costa Rica

Phytotaxa ◽  
2013 ◽  
Vol 109 (1) ◽  
pp. 36 ◽  
Author(s):  
TOMÁŠ HAUER ◽  
MARKÉTA BOHUNICKÁ ◽  
RADKA MÜHLSTEINOVÁ
Keyword(s):  
Costa Rica ◽  
16S Rrna ◽  
Type Species ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
Rrna Gene ◽  
Soil Material ◽  
Similar Morphology ◽  
Rdna Sequences ◽  
16S Rdna Sequences

A new tapered and false branched morphotype of filamentous heterocytous cyanobacterium was isolated from soil material collected on a massif of Chirripó Mountain, Costa Rica. The strain was analyzed morphologically and a sequence of its 16S rRNA gene was compared with available 16S rDNA sequences of organisms with similar morphology, especially those with heteropolar tapering filaments. Phylogenetic analyses revealed that the strain was significantly different from Rivulariaceae, but was closely related to several strains designated as Tolypothrix. However, according to the original descriptions in the literature, members of the genus Tolypothrix possess only very slightly tapering filaments. With regard to all these differences, we decided to describe a new genus—Calochaete gen. nov. with type species C. cimrmanii.

Description of Backusella constricta sp. nov. (Mucorales, ex Zygomycota) from the Brazilian Atlantic Rainforest, including a key to species of Backusella

Phytotaxa ◽  
2016 ◽  
Vol 289 (1) ◽  
pp. 59 ◽  
Author(s):  
DIOGO X. LIMA ◽  
KERSTIN VOIGT ◽  
CARLOS A.F. DE SOUZA ◽  
RAFAEL J.V. DE OLIVEIRA ◽  
CRISTINA M. SOUZA-MOTTA ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Atlantic Rainforest ◽  
Lsu Rdna ◽  
Key To Species ◽  
Simultaneous Production ◽  
Rdna Sequences ◽  
A New Species ◽  
Brazilian Atlantic Rainforest

The Backusella genus comprises mucoralean saprobes that inhabit in mainly soil and form transitorily curved (when young, erect at maturity) sporangiophores arising directly from the substratum, with simultaneous production of both sporangia and sporangiola. During a study of Mucorales in soil from an Atlantic Rainforest in Pernambuco, Brazil, one specimen of Backusella was isolated and characterized based on morphological, physiological and molecular data (ITS1-5.8S-ITS2 and LSU rDNA sequences). The phylogenetic analyses of the isolate revealed that it belongs to the Backusellaceae and is closely related to species of Backusella. The specimen grew better at 25ºC, with no development at 40ºC, and presented conical and cylindrical columellae possessing a central constriction as well as subglobose sporangiospores 7.5–15 × 5.5–10 µm. Based on the evidences of the analyzed datasets, a new species of Backusella is proposed and a taxonomic key for the species of this genus is provided.

scholarly journals Allophlebia, A New Genus to Accomodate Phlebia Ludoviciana (Agaricomycetes, Polyporales)

2021 ◽  
Author(s):  
Carla Rejane de Sousa Lira ◽  
Renata dos Santos Santos Chikowski ◽  
Vítor Xavier de Lima ◽  
Karl-Henrik Larsson ◽  
Tatiana Baptista Gibertoni
Keyword(s):  
Geographic Distribution ◽  
Type Species ◽  
New Genus ◽  
Morphological Characters ◽  
Molecular Data ◽  
New Combination ◽  
Hyphal System ◽  
Rdna Sequences ◽  
New Information ◽  
Thin Walled

Abstract Allophlebia is proposed as a new genus in Meruliaceae based on morphological characters and molecular data. The genus is typified by Peniophora ludoviciana and the new combination A. ludoviciana is proposed. The genus is so far monotypic. The type species is characterized by a resupinate basidioma, a monomitic hyphal system with clamp connections, two types of cystidia (leptocystidia and metuloids), clavate basidia, and hyaline, thin-walled and ellipsoid basidiospores. A phylogeny for Allophlebia and related taxa was inferred from ITS and nLSU rDNA sequences and new information about the geographic distribution of A. ludoviciana is provided.

Asian Betylobraconinae (Hymenoptera, Braconidae), with description of a new genus and phylogenetic affinities of the tribe Facitorini

2008 ◽  
Vol 39 (2) ◽  
pp. 133-154 ◽  
Author(s):  
Alberto Sáez ◽  
Kaoru Maeto ◽  
Alejandro Zaldivar-Riverón ◽  
Sergey Belokobylskij
Keyword(s):  
New Species ◽  
Type Species ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
28S Rrna ◽  
Asian Region ◽  
Molecular Phylogenetic ◽  
Phylogenetic Affinities ◽  
One New Species ◽  
Rrna Sequences

AbstractThe taxonomy of the Asian genera of the subfamily Betylobraconinae, a small and understudied group within the hymenopteran family Braconidae, is revised. A new genus exclusively from the Asian region, Asiabregma gen. nov., containing three species (A. ryukyuensis sp. nov. (type species, Japan and Malaya), A. makiharai sp. nov. (Japan) and A. sulaensis (van Achterberg), comb. nov. (Indonesia)) is described. One new species of Aulosaphobracon, A. striatus sp. nov. from Vietnam, and one of Facitorus, F. amamioshimus sp. nov. from Japan, are also described. Based on molecular phylogenetic analyses using COI mtDNA and 28S rRNA sequences, the three genera previously placed in the tribe Facitorini, Facitorus, Conobregma and Jannya, together with Asiabregma gen. nov., are transferred to the rogadine tribe Yeliconini.

Affinities of the Boletus chromapes group to Royoungia and the description of two new genera, Harrya and Australopilus

2012 ◽  
Vol 25 (6) ◽  
pp. 418 ◽  
Author(s):  
Roy E. Halling ◽  
Mitchell Nuhn ◽  
Todd Osmundson ◽  
Nigel Fechner ◽  
James M. Trappe ◽  
...  
Keyword(s):  
New Genus ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Elongation Factor ◽  
Sister Group ◽  
Molecular Data ◽  
Translation Elongation ◽  
Spore Deposit ◽  
Large Subunit Rdna ◽  
Translation Elongation Factor 1Α

Harrya is described as a new genus of Boletaceae to accommodate Boletus chromapes, a pink-capped bolete with a finely scabrous stipe adorned with pink scabers, a chrome yellow base and a reddish-brown spore deposit. Phylogenetic analyses of large-subunit rDNA and translation elongation factor 1α confirmed Harrya as a unique generic lineage with two species, one of which is newly described (H. atriceps). Some Chinese taxa were recently placed in a separate genus, Zangia, supported by both morphology and molecular data. Multiple accessions from Queensland, Australia, support the synonymy of at least three species in a separate Australian clade in the new genus, Australopilus. The truffle-like Royoungia is also supported as a separate lineage in this clade of boletes. Even though it lacks stipe characters, it possesses the deep, bright yellow to orange pigments in the peridium. Additional collections from Zambia and Thailand represent independent lineages of uncertain phylogenetic placement in the Chromapes complex, but sampling is insufficient for formal description of new species. Specimens from Java referable to Tylopilus pernanus appear to be a sister group of the Harrya lineage.

scholarly journals Polulichloris henanensis gen. et sp. nov. (Trebouxiophyceae, Chlorophyta), a novel subaerial coccoid green alga

Phytotaxa ◽  
2015 ◽  
Vol 218 (2) ◽  
pp. 137 ◽  
Author(s):  
Huiyin Song ◽  
Qi Zhang ◽  
Guoxiang Liu ◽  
Zhengyu Hu
Keyword(s):  
Green Alga ◽  
New Genus ◽  
Cultured Cells ◽  
Phylogenetic Analyses ◽  
Light And Electron Microscopy ◽  
Molecular Data ◽  
Ribulose Bisphosphate Carboxylase ◽  
Bisphosphate Carboxylase ◽  
Molecular Phylogenetic ◽  
18S Rdna Gene

Coccoid green algae are abundant in subaerial habitats, but they are largely unexplored because of their morphological uniformity. Several new genus-level lineages have recently been described on the basis of molecular data. In this study, a coccoid green alga was isolated from surface soil in Zhoukou, Henan Province, China, and the cultured cells were described using light and electron microscopy. The ellipsoidal cell had smooth cell wall and parietal chloroplast with a pyrenoid surrounded by a starch envelope. Reproduction occurred by formation of 2‒16 autospores. Molecular phylogenetic analyses based on the nuclear 18S rDNA gene and the chloroplast ribulose-bisphosphate carboxylase gene (rbcL) indicated that this coccoid green alga represents a new lineage of the Watanabea clade (Trebouxiophyceae, Chlorophyta). Here, we describe this organism as a new genus and species, Polulichloris henanensis, gen. et sp. nov.

Molecular and morphological characterisation of Cryptaphelenchus baujardi n. sp. (Nematoda: Ektaphelenchinae), a new species based on two populations from Iran

Nematology ◽  
2019 ◽  
Vol 21 (1) ◽  
pp. 45-56 ◽  
Author(s):  
Farzad Aliramaji ◽  
Esmaeil Miraeiz ◽  
Ebrahim Pourjam ◽  
Ramin Heydari
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Lsu Rdna ◽  
New Taxon ◽  
Male Body ◽  
Northern Iran ◽  
Lateral Field ◽  
Rdna Sequences ◽  
Strong Resemblance ◽  
Two Populations

Summary Cryptaphelenchus baujardi n. sp. is described and illustrated based on two populations from Golestan province, northern Iran. The new species is characterised by female and male body length of 224 (190-261) and 215 (195-229) μm, respectively, offset cephalic region with a shallow constriction, delicate stylet 6.6 (6.0-7.0) μm long, four incisures in the lateral field, presence of a rudimentary post-uterine sac in the female gonoduct, elongate-conoid female tail ending in an acute to finely rounded terminus, male tail conical, male with seven caudal papillae and delicate spicules. The new species shows a strong resemblance to C. varicaudatus and C. iranicus, but has a sclerotised mass near the tip of the spicule and an indistinct spermatheca. Phylogenetic analyses based on both partial SSU and LSU rDNA sequences confirm its status as a new taxon.

scholarly journals Molecular and morphological evidence reveal a new genus and species in Auriculariales from tropical China

MycoKeys ◽  
2018 ◽  
Vol 35 ◽  
pp. 27-39 ◽  
Author(s):  
Hai-Sheng Yuan ◽  
Xu Lu ◽  
Cony Decock
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
Type Species ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
Strong Support ◽  
Morphological Characteristics ◽  
Morphological Evidence ◽  
New Genus And Species ◽  
Tropical China

Grammatuslabyrinthinusgen. et sp. nov. is proposed based on DNA sequences data and morphological characteristics. It is known so far from southern, tropical China. The new species is characterised by an annual, resupinate basidiocarp with a shallow, subporoid hymenophore, a hymenium restricted to the bottom of the tubes, a dimitic hyphal system, presence of encrusted skeletocystidia and dendrohyphidia, longitudinally septate basidia and smooth, oblong-ellipsoid to cylindrical, acyanophilous basidiospores. Phylogenetic analyses based on ITS + nLSU DNA sequences data indicate that G.labyrinthinus belongs to Auriculariaceae in which it has an isolated position. Phylogenetic inferences show G.labyrinthinus to be related to Heteroradulum. However, the ITS sequences similarity between G.labyrinthinus and H.kmetii, the type species of Heteroradulum, were 89.84% and support the establishment of the new genus. Inversely, Heteroradulumsemis clustered with G.labyrinthinus with strong support and it is transferred to Grammatus.

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