scholarly journals Molecular Characterization of Distinct Fungal Communities in the Soil of a Rare Rarth Mining Area

2021 ◽  
Author(s):  
jingjing Liu ◽  
Chun Li ◽  
Wendan Ma ◽  
Wei Liu ◽  
Weixiang Wu
Keyword(s):  
Rare Earth ◽  
Fungal Community ◽  
Quantitative Polymerase Chain Reaction ◽  
Critical Role ◽  
Mining Area ◽  
Fungal Community Composition ◽  
Fungal Structure ◽  
Depth Analysis ◽  
Mining Soils

Abstract The exploitation of ion absorbed rare earth elements (REEs) has caused serious ecological destruction and environmental pollution. Effect on soil fungal structure and diversity caused by mining activities are usually ignored, although fungi are one of the most important components in soil ecosystems. In the present research, quantitative polymerase chain reaction (qPCR) and high-throughput Illumina MiSeq sequencing were conducted to characterize fungal community composition and structure in soil of a rare earth mining area after in-situ leaching. Statistical analyses, Network and FUNGuild were used to conduct in-depth analysis. Ascomycota, Basidiomycota, Glomeromycota and unclassified fungi were the most abundant phyla in the mining soils. Organic matter, TC and TN contents, but not pH or REEs contents, were the vital factors to determine soil fungal abundances and diversities. Fungal community structures were stable after leaching practice, but nutrition contents significantly and positively contributed to fungal abundances and diversities. Fungi could mediate the interaction between species to enhance their ability to resist the harsh environment of REEs toxicity or ammonium caused by in-situ leaching practice. Saprotroph in phyla Ascomycota and Basidiomycota were the dominant fungal trophic mode in the mining soils, and they played a critical role in nutrient cycling, transformation processes and reducing metal toxicity. Symbiotrophs of phyla Glomeromycota contributed to soil aggregation and slowing down nutrient losses after in-situ leaching practice.

scholarly journals Characterization of Anaerobic Rumen Fungal Community Composition in Yak, Tibetan Sheep and Small Tail Han Sheep Grazing on the Qinghai-Tibetan Plateau

Animals ◽  
2020 ◽  
Vol 10 (1) ◽  
pp. 144 ◽  
Author(s):  
Wei Guo ◽  
Weiwei Wang ◽  
Sisi Bi ◽  
Ruijun Long ◽  
Farman Ullah ◽  
...  
Keyword(s):  
Tibetan Plateau ◽  
Fungal Community ◽  
Host Species ◽  
Critical Role ◽  
Keystone Species ◽  
Alpha Diversity ◽  
Living Environment ◽  
Fungal Community Composition ◽  
Tibetan Sheep ◽  
Fungal Structure

The anaerobic rumen fungal community play a critical role in fibrous material degradation. However, there is a lack of data describing the composition of anaerobic rumen fungal community of full grazing ruminants in the Qinghai-Tibetan Plateau. For this reason, we employed the next-generation sequencing technique to elucidate the rumen fungal structure composition and evaluate the effects of host species on fungal communities. Community comparisons (Bray–Curtis index) between yak and Tibetan sheep revealed that the rumen fungal community was affected by host species (p < 0.05). The alpha diversity indices in the yak were significantly higher than in the Tibetan sheep and Small Tail Han sheep. Neocallimastigomycota was predominant regardless of host species. Within this phylum, unidentified genus of Neocallimastigaceae was the most dominant in all samples, followed by Piromyces and Orpinomyces. Moreover, the shared and unique OTUs in the rumen were identified and most of them belonged to the Orpinomyces. Co-occurrence network analysis identified that each animal species had their own keystone species and most of them were non-dominant flora. Our data indicate that host breeds override living environment as the key factor that determines fungal community in the rumen of grazing ruminants in the Qinghai-Tibetan Plateau.

scholarly journals Assessing the Response of Ruminal Bacterial and Fungal Microbiota to Whole-Rumen Contents Exchange in Dairy Cows

2021 ◽  
Vol 12 ◽  
Author(s):  
Madison S. Cox ◽  
Courtney L. Deblois ◽  
Garret Suen
Keyword(s):  
Microbial Community ◽  
Dairy Cows ◽  
Fungal Community ◽  
Time Course ◽  
Production Efficiency ◽  
High Efficiency ◽  
Community Response ◽  
Fungal Community Composition ◽  
Depth Analysis ◽  
Low Efficiency

A major goal for the dairy industry is to improve overall milk production efficiency (MPE). With the advent of next-generation sequencing and advanced methods for characterizing microbial communities, efforts are underway to improve MPE by manipulating the rumen microbiome. Our previous work demonstrated that a near-total exchange of whole rumen contents between pairs of lactating Holstein dairy cows of disparate MPE resulted in a reversal of MPE status for ∼10 days: historically high-efficiency cows decreased in MPE, and historically low-efficiency cows increased in MPE. Importantly, this switch in MPE status was concomitant with a reversal in the ruminal bacterial microbiota, with the newly exchanged bacterial communities reverting to their pre-exchange state. However, this work did not include an in-depth analysis of the microbial community response or an interrogation of specific taxa correlating to production metrics. Here, we sought to better understand the response of rumen communities to this exchange protocol, including consideration of the rumen fungi. Rumen samples were collected from 8 days prior to, and 56 days following the exchange and were subjected to 16S rRNA and ITS amplicon sequencing to assess bacterial and fungal community composition, respectively. Our results show that the ruminal fungal community did not differ significantly between hosts of disparate efficiency prior to the exchange, and no change in community structure was observed over the time course. Correlation of microbial taxa to production metrics identified one fungal operational taxonomic unit (OTU) in the genus Neocallimastix that correlated positively to MPE, and several bacterial OTUs classified to the genus Prevotella. Within the Prevotella, Prevotella_1 was found to be more abundant in high-efficiency cows whereas Prevotella_7 was more abundant in low-efficiency cows. Overall, our results suggest that the rumen bacterial community is a primary microbial driver of host efficiency, that the ruminal fungi may not have as significant a role in MPE as previously thought, and that more work is needed to better understand the functional roles of specific ruminal microbial community members in modulating MPE.

Mudflat reclamation causes change in the composition of fungal communities under long-term rice cultivation

2019 ◽  
Vol 65 (7) ◽  
pp. 530-537 ◽  
Author(s):  
Yang Zhang ◽  
Qing Li ◽  
Yinglong Chen ◽  
Qigen Dai ◽  
Jian Hu
Keyword(s):  
Soil Fertility ◽  
Fungal Community ◽  
Critical Role ◽  
Illumina Miseq ◽  
Rice Cultivation ◽  
Fungal Communities ◽  
Fungal Community Composition ◽  
Saprotrophic Fungi ◽  
Factors Affecting

Fungi play a critical role in farmland ecosystems, especially in improving soil fertility; however, little is known about the changes in fungal communities caused by mudflat reclamation under rice cultivation. In this study, mudflats located in Yancheng, China, which were divided into nine plots with 0, 11, and 20 years of successive rice cultivation histories, were sampled to determine the fungal community composition by using Illumina MiSeq sequencing. Results show that the Shannon diversity of the fungal communities did not change significantly but the species richness increased under mudflat reclamation with long-term rice cultivation. Ascomycota was the dominant phylum throughout the reclaimed mudflats samples, while Sordariomycetes was the dominant class. Fungal functional prediction found that the relative abundance of saprotrophs gradually increased with mudflat reclamation and mainly belonged to Ascomycota after 20 years of successive reclamation. Redundancy analysis showed that electrical conductivity, organic matter, and total nitrogen were the main factors affecting the composition and ecological function of the fungal community during mudflat reclamation. In short, a fungal community dominated by Ascomycota was established during mudflat reclamation under rice cultivation, which is more conducive to promoting soil fertility because of the higher proportion of saprotrophic fungi in Ascomycota.

scholarly journals Root Exudates Regulate Soil Fungal Community Composition and Diversity

2007 ◽  
Vol 74 (3) ◽  
pp. 738-744 ◽  
Author(s):  
Corey D. Broeckling ◽  
Amanda K. Broz ◽  
Joy Bergelson ◽  
Daniel K. Manter ◽  
Jorge M. Vivanco
Keyword(s):  
Community Composition ◽  
Root Exudates ◽  
Fungal Community ◽  
Fungal Biomass ◽  
Critical Role ◽  
Fungal Community Composition ◽  
General Role ◽  
Soil Fungal Community ◽  
Fungal Populations ◽  
Soil Fungal Community Composition

ABSTRACT Plants are in constant contact with a community of soil biota that contains fungi ranging from pathogenic to symbiotic. A few studies have demonstrated a critical role of chemical communication in establishing highly specialized relationships, but the general role for root exudates in structuring the soil fungal community is poorly described. This study demonstrates that two model plant species (Arabidopsis thaliana and Medicago truncatula) are able to maintain resident soil fungal populations but unable to maintain nonresident soil fungal populations. This is mediated largely through root exudates: the effects of adding in vitro-generated root exudates to the soil fungal community were qualitatively and quantitatively similar to the results observed for plants grown in those same soils. This effect is observed for total fungal biomass, phylotype diversity, and overall community similarity to the starting community. Nonresident plants and root exudates influenced the fungal community by both positively and negatively impacting the relative abundance of individual phylotypes. A net increase in fungal biomass was observed when nonresident root exudates were added to resident plant treatments, suggesting that increases in specific carbon substrates and/or signaling compounds support an increased soil fungal population load. This study establishes root exudates as a mechanism through which a plant is able to regulate soil fungal community composition.

Synthetic zircon doped with hafnium and rare earth elements: A reference material for in situ hafnium isotope analysis

2011 ◽  
Vol 286 (1-2) ◽  
pp. 32-47 ◽  
Author(s):  
Christopher M. Fisher ◽  
John M. Hanchar ◽  
Scott D. Samson ◽  
Bruno Dhuime ◽  
Janne Blichert-Toft ◽  
...  
Keyword(s):  
Rare Earth ◽  
Reference Material ◽  
Rare Earth Elements ◽  
Isotope Analysis

scholarly journals Earthworms drastically change fungal and bacterial communities during vermicomposting of sewage sludge

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Jorge Domínguez ◽  
Manuel Aira ◽  
Keith A. Crandall ◽  
Marcos Pérez-Losada
Keyword(s):  
Sewage Sludge ◽  
Community Composition ◽  
Fungal Community ◽  
High Throughput Sequencing ◽  
Wastewater Treatment Plants ◽  
Agricultural Practices ◽  
Fungal Community Composition ◽  
Earthworm Casts ◽  
Composition And Structure ◽  
Sustainable Agricultural Practices

AbstractWastewater treatment plants produce hundreds of million tons of sewage sludge every year all over the world. Vermicomposting is well established worldwide and has been successful at processing sewage sludge, which can contribute to alleviate the severe environmental problems caused by its disposal. Here, we utilized 16S and ITS rRNA high-throughput sequencing to characterize bacterial and fungal community composition and structure during the gut- and cast-associated processes (GAP and CAP, respectively) of vermicomposting of sewage sludge. Bacterial and fungal communities of earthworm casts were mainly composed of microbial taxa not found in the sewage sludge; thus most of the bacterial (96%) and fungal (91%) taxa in the sewage sludge were eliminated during vermicomposting, mainly through the GAP. Upon completion of GAP and during CAP, modified microbial communities undergo a succession process leading to more diverse microbiotas than those found in sewage sludge. Consequently, bacterial and fungal community composition changed significantly during vermicomposting. Vermicomposting of sewage resulted in a stable and rich microbial community with potential biostimulant properties that may aid plant growth. Our results support the use of vermicompost derived from sewage sludge for sustainable agricultural practices, if heavy metals or other pollutants are under legislation limits or adequately treated.

scholarly journals Upregulation of Serum lncRNA DLEU1 Predicts Progression of Premalignant Endometrial Lesion and Unfavorable Clinical Outcome of Endometrial Cancer

2020 ◽  
Vol 19 ◽  
pp. 153303382096558
Author(s):  
Lixia Shan ◽  
Tao Zhao ◽  
Yu Wang
Keyword(s):  
Endometrial Cancer ◽  
Endometrial Hyperplasia ◽  
Cox Regression ◽  
Quantitative Polymerase Chain Reaction ◽  
Critical Role ◽  
Disease Free Survival ◽  
Lymphocytic Leukemia ◽  
Healthy Controls ◽  
Clinical Value ◽  
Cox Regression Analysis

Objective: Long non-coding RNAs (lncRNAs) play a critical role in tumorigenesis. Upregulation of lncRNA deleted in lymphocytic leukemia 1 (DLEU1) has been reported in endometrial cancer (EC) tissues. This prospective study aimed to determine the potential clinical significance of serum lncRNA DLEU1 in EC. Methods: The serum lncRNA DLEU1 level was detected in EC patients, patients with endometrial hyperplasia and healthy controls by reverse transcription-quantitative polymerase chain reaction (RT-qPCR). Then its clinical value in EC was further evaluated. Results: Our results demonstrated that serum lncRNA DLEU1 levels were significantly increased in patients with EC, and serum lncRNA DLEU1 showed good performance for discriminating EC patients from patients with endometrial hyperplasia and healthy controls. In addition, EC patients with advanced clinicopathological features had higher circulating lncRNA DLEU1 level than those with favorable clinical characteristics. Moreover, EC patients in the high serum lncRNA DLEU1 group suffered worse overall survival and disease-free survival than those in the low serum lncRNA DLEU1 group. Furthermore, multivariate cox regression analysis displayed that the serum lncRNA DLEU1 served as an independent prognostic factor for EC. Conclusions: Collectively, our study suggests that serum lncRNA DLEU1 is a novel and promising biomarker for prognostic estimation of EC.

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