Interaction of RSC Chromatin Remodelling Complex with Nucleosomes is Modulated by H3 K14 Acetylation and H2B SUMOylation  In vivo

2020 ◽  
Author(s):  
Neha Jain ◽  
Davide Tamborrini ◽  
Brian Evans ◽  
Shereen Chaudhry ◽  
Bryan J. Wilkins ◽  
...  
2020 ◽  
Author(s):  
Neha Jain ◽  
Davide Tamborrini ◽  
Brian Evans ◽  
Shereen Chaudhry ◽  
Bryan J. Wilkins ◽  
...  

AbstractChromatin remodelling complexes are multi-subunit nucleosome translocases that reorganize chromatin in the context of DNA replication, repair and transcription. A key question is how these complexes find their target sites on chromatin. Here, we use genetically encoded photo-crosslinker amino acids to map the footprint of Sth1, the catalytic subunit of the RSC (remodels the structure of chromatin) complex, on the nucleosome in living yeast. We find that the interaction of the Sth1 bromodomain with the H3 tail depends on K14 acetylation by Gcn5. This modification does not recruit RSC to chromatin but mediates its interaction with neighbouring nucleosomes. We observe a preference of RSC for H2B SUMOylated nucleosomes in vivo and show that this modification moderately enhances RSC binding to nucleosomes in vitro. Furthermore, RSC is not ejected from chromatin in mitosis, but its mode of nucleosome binding differs between interphase and mitosis. In sum, our in vivo analyses show that RSC recruitment to specific chromatin targets involves multiple histone modifications most likely in combination with other components such as histone variants and transcription factors.Key PointsIn vivo photo-crosslinking reveals the footprint of the ATPase subunit of RSC on the nucleosome.RSC binds to H3 K14ac nucleosomes via the C-terminal bromodomain of its ATPase-subunit Sth1.RSC preferentially localizes to H2B-SUMOylated nucleosomes.


Microbiology ◽  
2003 ◽  
Vol 149 (2) ◽  
pp. 341-351 ◽  
Author(s):  
Cristina Ruiz ◽  
Victoria Escribano ◽  
Eulalia Morgado ◽  
María Molina ◽  
María J. Mazón

2019 ◽  
Vol 12 (1) ◽  
Author(s):  
Iga Jancewicz ◽  
Janusz A. Siedlecki ◽  
Tomasz J. Sarnowski ◽  
Elzbieta Sarnowska

Abstract BRM (BRAHMA) is a core, SWI2/SNF2-type ATPase subunit of SWI/SNF chromatin-remodelling complex (CRC) involved in various important regulatory processes including development. Mutations in SMARCA2, a BRM-encoding gene as well as overexpression or epigenetic silencing were found in various human diseases including cancer. Missense mutations in SMARCA2 gene were recently connected with occurrence of Nicolaides–Baraitser genetics syndrome. By contrast, SMARCA2 duplication rather than mutations is characteristic for Coffin–Siris syndrome. It is believed that BRM usually acts as a tumour suppressor or a tumour susceptibility gene. However, other studies provided evidence that BRM function may differ depending on the cancer type and the disease stage, where BRM may play a role in the disease progression. The existence of alternative splicing forms of SMARCA2 gene, leading to appearance of truncated functional, loss of function or gain-of-function forms of BRM protein suggest a far more complicated mode of BRM-containing SWI/SNF CRCs actions. Therefore, the summary of recent knowledge regarding BRM alteration in various types of cancer and highlighting of differences and commonalities between BRM and BRG1, another SWI2/SNF2 type ATPase, will lead to better understanding of SWI/SNF CRCs function in cancer development/progression. BRM has been recently proposed as an attractive target for various anticancer therapies including the use of small molecule inhibitors, synthetic lethality induction or proteolysis-targeting chimera (PROTAC). However, such attempts have some limitations and may lead to severe side effects given the homology of BRM ATPase domain to other ATPases, as well as due to the tissue-specific appearance of BRM- and BRG1-containing SWI/SNF CRC classes. Thus, a better insight into BRM-containing SWI/SNF CRCs function in human tissues and cancers is clearly required to provide a solid basis for establishment of new safe anticancer therapies.


PLoS ONE ◽  
2011 ◽  
Vol 6 (4) ◽  
pp. e19184 ◽  
Author(s):  
Anna Vintermist ◽  
Stefanie Böhm ◽  
Fatemeh Sadeghifar ◽  
Emilie Louvet ◽  
Anethe Mansén ◽  
...  

2011 ◽  
Vol 31 (2) ◽  
pp. 301-316 ◽  
Author(s):  
Sonia V Forcales ◽  
Sonia Albini ◽  
Lorenzo Giordani ◽  
Barbora Malecova ◽  
Luca Cignolo ◽  
...  

2009 ◽  
Vol 11 (8) ◽  
pp. 1010-1016 ◽  
Author(s):  
Yonggang Zhou ◽  
Kerstin-Maike Schmitz ◽  
Christine Mayer ◽  
Xuejun Yuan ◽  
Asifa Akhtar ◽  
...  

2016 ◽  
Vol 36 (3) ◽  
Author(s):  
Sneha Lal ◽  
Md Maksudul Alam ◽  
Jagmohan Hooda ◽  
Ajit Shah ◽  
Thai M. Cao ◽  
...  

Swi3 is a key component of the well-known SWI–SNF chromatin remodelling complex. Here, we discovered a novel Swi3 function: Swi3 and its mammalian homologues suppress oxygen consumption, and Swi3 regulates the expression of aerobic respiration genes in an oxygen-dependent manner.


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