scholarly journals Three-Dimensional Structure of a Mesoscale Convective System in a Baiu-Frontal Depression Generated in the Downstream Region of the Yangtze River

2003 ◽  
Vol 81 (5) ◽  
pp. 1243-1271 ◽  
Author(s):  
Hiroyuki YAMADA ◽  
Biao GENG ◽  
Krishnareddigari Krishna REDDY ◽  
Hiroshi UYEDA ◽  
Yasushi FUJIYOSHI
2011 ◽  
Vol 29 (5) ◽  
pp. 731-747 ◽  
Author(s):  
C. Barthe ◽  
C. Mari ◽  
J.-P. Chaboureau ◽  
P. Tulet ◽  
F. Roux ◽  
...  

Abstract. A three-dimensional cloud-resolving model is used to investigate the vertical transport from the lower to the upper troposphere in a mesoscale convective system (MCS) that occurred over Niger on 15 August 2004. The redistribution of five passive tracers initially confined in horizontally homogeneous layers is analyzed. The monsoon layer tracer (0–1.5 km) is the most efficiently transported in the upper troposphere with concentrations 3 to 4 times higher than the other tracers in the anvil. On the contrary the African Easterly Jet tracer (~3 km) has the lowest contribution above 5 km. The vertical profiles of the mid-troposphere tracers (4.5–10 km) in the MCS exhibit two peaks: one in their initial layers, and the second one at 13–14 km altitude, underlying the importance of mid-tropospheric air in feeding the upper troposphere. Mid-tropospheric tracers also experience efficient transport by convective downdrafts with a consequent increase of their concentrations at the surface. The concentration of the upper troposphere–lower stratosphere tracer exhibits strong gradients at the edge of the cloud, meaning almost no entrainment of this tracer into the cloud. No downward transport from the upper troposphere is simulated below 5 km. A proxy for lightning produced NOx is transported preferentially in the forward anvil in the upper troposphere. Additionally, lateral inflows significantly contribute to the updraft and downdraft airflows emphasizing the three-dimensional structure of the West African MCSs.


2012 ◽  
Vol 69 (11) ◽  
pp. 3372-3390 ◽  
Author(s):  
Alexander D. Schenkman ◽  
Ming Xue ◽  
Alan Shapiro

Abstract The Advanced Regional Prediction System (ARPS) is used to simulate a tornadic mesovortex with the aim of understanding the associated tornadogenesis processes. The mesovortex was one of two tornadic mesovortices spawned by a mesoscale convective system (MCS) that traversed southwestern and central Oklahoma on 8–9 May 2007. The simulation used 100-m horizontal grid spacing, and is nested within two outer grids with 400-m and 2-km grid spacing, respectively. Both outer grids assimilate radar, upper-air, and surface observations via 5-min three-dimensional variational data assimilation (3DVAR) cycles. The 100-m grid is initialized from a 40-min forecast on the 400-m grid. Results from the 100-m simulation provide a detailed picture of the development of a mesovortex that produces a submesovortex-scale tornado-like vortex (TLV). Closer examination of the genesis of the TLV suggests that a strong low-level updraft is critical in converging and amplifying vertical vorticity associated with the mesovortex. Vertical cross sections and backward trajectory analyses from this low-level updraft reveal that the updraft is the upward branch of a strong rotor that forms just northwest of the simulated TLV. The horizontal vorticity in this rotor originates in the near-surface inflow and is caused by surface friction. An additional simulation with surface friction turned off does not produce a rotor, strong low-level updraft, or TLV. Comparison with previous two-dimensional numerical studies of rotors in the lee of mountains shows striking similarities to the rotor formation presented herein. The findings of this study are summarized in a four-stage conceptual model for tornadogenesis in this case that describes the evolution of the event from mesovortexgenesis through rotor development and finally TLV genesis and intensification.


2011 ◽  
Vol 139 (5) ◽  
pp. 1352-1369 ◽  
Author(s):  
Kelly M. Mahoney ◽  
Gary M. Lackmann

Analysis of a pair of three-dimensional simulations of mesoscale convective systems (MCSs) reveals a significant sensitivity of convective momentum transport (CMT), MCS motion, and the generation of severe surface winds to ambient moisture. The Weather Research and Forecasting model is used to simulate an idealized MCS, which is compared with an MCS in a drier midlevel environment. The MCS in the drier environment is smaller, moves slightly faster, and exhibits increased descent and more strongly focused areas of enhanced CMT near the surface in the trailing stratiform region relative to that in the control simulation. A marked increase in the occurrence of severe surface winds is observed between the dry midlevel simulation and the control. It is shown that the enhanced downward motion associated with decreased midlevel relative humidity affects CMT fields and contributes to an increase in the number of grid-cell occurrences of severe surface winds. The role of a descending rear-inflow jet in producing strong surface winds at locations trailing the gust front is also analyzed, and is found to be associated with low-level CMT maxima, particularly in the drier midlevel simulation.


2011 ◽  
Vol 139 (1) ◽  
pp. 224-246 ◽  
Author(s):  
Alexander D. Schenkman ◽  
Ming Xue ◽  
Alan Shapiro ◽  
Keith Brewster ◽  
Jidong Gao

Abstract The Advanced Regional Prediction System (ARPS) model is employed to perform high-resolution numerical simulations of a mesoscale convective system and associated cyclonic line-end vortex (LEV) that spawned several tornadoes in central Oklahoma on 8–9 May 2007. The simulation uses a 1000 km × 1000 km domain with 2-km horizontal grid spacing. The ARPS three-dimensional variational data assimilation (3DVAR) is used to assimilate a variety of data types. All experiments assimilate routine surface and upper-air observations as well as wind profiler and Oklahoma Mesonet data over a 1-h assimilation window. A subset of experiments assimilates radar data. Cloud and hydrometeor fields as well as in-cloud temperature are adjusted based on radar reflectivity data through the ARPS complex cloud analysis procedure. Radar data are assimilated from the Weather Surveillance Radar-1988 Doppler (WSR-88D) network as well as from the Engineering Research Center for Collaborative and Adaptive Sensing of the Atmosphere (CASA) network of four X-band Doppler radars. Three-hour forecasts are launched at the end of the assimilation window. The structure and evolution of the forecast MCS and LEV are markedly better throughout the forecast period in experiments in which radar data are assimilated. The assimilation of CASA radar data in addition to WSR-88D data increases the structural detail of the modeled squall line and MCS at the end of the assimilation window, which appears to yield a slightly better forecast track of the LEV.


Author(s):  
N. H. Olson ◽  
T. S. Baker ◽  
Wu Bo Mu ◽  
J. E. Johnson ◽  
D. A. Hendry

Nudaurelia capensis β virus (NβV) is an RNA virus of the South African Pine Emperor moth, Nudaurelia cytherea capensis (Lepidoptera: Saturniidae). The NβV capsid is a T = 4 icosahedron that contains 60T = 240 subunits of the coat protein (Mr = 61,000). A three-dimensional reconstruction of the NβV capsid was previously computed from visions embedded in negative stain suspended over holes in a carbon film. We have re-examined the three-dimensional structure of NβV, using cryo-microscopy to examine the native, unstained structure of the virion and to provide a initial phasing model for high-resolution x-ray crystallographic studiesNβV was purified and prepared for cryo-microscopy as described. Micrographs were recorded ∼1 - 2 μm underfocus at a magnification of 49,000X with a total electron dose of about 1800 e-/nm2.


Author(s):  
David A. Agard ◽  
Yasushi Hiraoka ◽  
John W. Sedat

In an effort to understand the complex relationship between structure and biological function within the nucleus, we have embarked on a program to examine the three-dimensional structure and organization of Drosophila melanogaster embryonic chromosomes. Our overall goal is to determine how DNA and proteins are organized into complex and highly dynamic structures (chromosomes) and how these chromosomes are arranged in three dimensional space within the cell nucleus. Futher, we hope to be able to correlate structual data with such fundamental biological properties as stage in the mitotic cell cycle, developmental state and transcription at specific gene loci.Towards this end, we have been developing methodologies for the three-dimensional analysis of non-crystalline biological specimens using optical and electron microscopy. We feel that the combination of these two complementary techniques allows an unprecedented look at the structural organization of cellular components ranging in size from 100A to 100 microns.


Author(s):  
José L. Carrascosa ◽  
José M. Valpuesta ◽  
Hisao Fujisawa

The head to tail connector of bacteriophages plays a fundamental role in the assembly of viral heads and DNA packaging. In spite of the absence of sequence homology, the structure of connectors from different viruses (T4, Ø29, T3, P22, etc) share common morphological features, that are most clearly revealed in their three-dimensional structure. We have studied the three-dimensional reconstruction of the connector protein from phage T3 (gp 8) from tilted view of two dimensional crystals obtained from this protein after cloning and purification.DNA sequences including gene 8 from phage T3 were cloned, into Bam Hl-Eco Rl sites down stream of lambda promotor PL, in the expression vector pNT45 under the control of cI857. E R204 (pNT89) cells were incubated at 42°C for 2h, harvested and resuspended in 20 mM Tris HC1 (pH 7.4), 7mM 2 mercaptoethanol, ImM EDTA. The cells were lysed by freezing and thawing in the presence of lysozyme (lmg/ml) and ligthly sonicated. The low speed supernatant was precipitated by ammonium sulfate (60% saturated) and dissolved in the original buffer to be subjected to gel nitration through Sepharose 6B, followed by phosphocellulose colum (Pll) and DEAE cellulose colum (DE52). Purified gp8 appeared at 0.3M NaCl and formed crystals when its concentration increased above 1.5 mg/ml.


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