scholarly journals Automatic Ontology Construction Using Text Corpora and Ontology Design Patterns (ODPs) in Alzheimer’s Disease

2017 ◽  
Vol 10 (2) ◽  
pp. 59 ◽  
Author(s):  
Denis Eka Cahyani ◽  
Ito Wasito

An ontology is defined as an explicit specification of a conceptualization, which is an important tool for modeling, sharing and reuse of domain knowledge. However, ontology construction by hand is a complex and a time consuming task. This research presents a fully automatic method to build bilingual domain ontology from text corpora and ontology design patterns (ODPs) in Alzheimer’s disease. This method combines two approaches: ontology learning from texts and matching with ODPs. It consists of six steps: (i) Term & relation extraction (ii) Matching with Alzheimer glossary (iii) Matching with ontology design patterns (iv) Score computation similarity term & relation with ODPs (v) Ontology building (vi) Ontology evaluation. The result of ontology composed of 381 terms and 184 relations with 200 new terms and 42 new relations were added. Fully automatic ontology construction has higher complexity, shorter time and reduces role of the expert knowledge to evaluate ontology than manual ontology construction. This proposed method is sufficiently flexible to be applied to other domains.

Author(s):  
Marwa Manaa ◽  
Thouraya Sakouhi ◽  
Jalel Akaichi

Mobility data became an important paradigm for computing performed in various areas. Mobility data is considered as a core revealing the trace of mobile objects displacements. While each area presents a different optic of trajectory, they aim to support mobility data with domain knowledge. Semantic annotations may offer a common model for trajectories. Ontology design patterns seem to be promising solutions to define such trajectory related pattern. They appear more suitable for the annotation of multiperspective data than the only use of ontologies. The trajectory ontology design pattern will be used as a semantic layer for trajectory data warehouses for the sake of analyzing instantaneous behaviors conducted by mobile entities. In this chapter, the authors propose a semantic approach for the semantic modeling of trajectory and trajectory data warehouses based on a trajectory ontology design pattern. They validate the proposal through real case studies dealing with behavior analysis and animal tracking case studies.


2006 ◽  
Vol 33 (5) ◽  
pp. 575-583 ◽  
Author(s):  
Kazunari Ishii ◽  
Atsushi K. Kono ◽  
Hiroki Sasaki ◽  
Naokazu Miyamoto ◽  
Tetsuya Fukuda ◽  
...  

Hippocampus ◽  
2009 ◽  
Vol 19 (6) ◽  
pp. 579-587 ◽  
Author(s):  
Marie Chupin ◽  
Emilie Gérardin ◽  
Rémi Cuingnet ◽  
Claire Boutet ◽  
Louis Lemieux ◽  
...  

2017 ◽  
Vol 3 (3) ◽  
pp. 58 ◽  
Author(s):  
Bojan Cestnik ◽  
Elsa Fabbretti ◽  
Donatella Gubiani ◽  
Tanja Urbančič ◽  
Nada Lavrač

Literature-based discovery tools have been often used to overcome the problem of fragmentation of science and to assist researchers in their process of cross-domain knowledge discovery. In this paper we propose a methodology for cross-domain literature-based discovery that focuses on outlier documents to reduce the search space of potential cross-domain links and to improve search efficiency. In a previous study, literature mining tools OntoGen for document clustering and CrossBee for cross-domain bridging term exploration were combined to search for hidden relations in scientific papers from two different domains of interest, where the utility of the approach was demonstrated in a study involving PubMed papers about Alzheimer’s disease and gut microbiome. This paper extends the approach by proposing a methodology, implemented as a repeatable workflow in a web-based text mining platform TextFlows, which enables easy access and execution of the methodology for the interested researcher.


Author(s):  
Bao-An Nguyen ◽  
Don-Lin Yang

An ontology is an effective formal representation of knowledge used commonly in artificial intelligence, semantic web, software engineering, and information retrieval. In open and distance learning, ontologies are used as knowledge bases for e-learning supplements, educational recommenders, and question answering systems that support students with much needed resources. In such systems, ontology construction is one of the most important phases. Since there are abundant documents on the Internet, useful learning materials can be acquired openly with the use of an ontology.  However, due to the lack of system support for ontology construction, it is difficult to construct self-instructional materials for Vietnamese people. In general, the cost of manual acquisition of ontologies from domain documents and expert knowledge is too high. Therefore, we present a support system for Vietnamese ontology construction using pattern-based mechanisms to discover Vietnamese concepts and conceptual relations from Vietnamese text documents. In this system, we use the combination of statistics-based, data mining, and Vietnamese natural language processing methods to develop concept and conceptual relation extraction algorithms to discover knowledge from Vietnamese text documents. From the experiments, we show that our approach provides a feasible solution to build Vietnamese ontologies used for supporting systems in education.<br /><br />


2020 ◽  
Vol 197 ◽  
pp. 105765
Author(s):  
Branimir Ljubic ◽  
Shoumik Roychoudhury ◽  
Xi Hang Cao ◽  
Martin Pavlovski ◽  
Stefan Obradovic ◽  
...  

2021 ◽  
Vol 13 ◽  
Author(s):  
Aparna Balagopalan ◽  
Benjamin Eyre ◽  
Jessica Robin ◽  
Frank Rudzicz ◽  
Jekaterina Novikova

Introduction: Research related to the automatic detection of Alzheimer's disease (AD) is important, given the high prevalence of AD and the high cost of traditional diagnostic methods. Since AD significantly affects the content and acoustics of spontaneous speech, natural language processing, and machine learning provide promising techniques for reliably detecting AD. There has been a recent proliferation of classification models for AD, but these vary in the datasets used, model types and training and testing paradigms. In this study, we compare and contrast the performance of two common approaches for automatic AD detection from speech on the same, well-matched dataset, to determine the advantages of using domain knowledge vs. pre-trained transfer models.Methods: Audio recordings and corresponding manually-transcribed speech transcripts of a picture description task administered to 156 demographically matched older adults, 78 with Alzheimer's Disease (AD) and 78 cognitively intact (healthy) were classified using machine learning and natural language processing as “AD” or “non-AD.” The audio was acoustically-enhanced, and post-processed to improve quality of the speech recording as well control for variation caused by recording conditions. Two approaches were used for classification of these speech samples: (1) using domain knowledge: extracting an extensive set of clinically relevant linguistic and acoustic features derived from speech and transcripts based on prior literature, and (2) using transfer-learning and leveraging large pre-trained machine learning models: using transcript-representations that are automatically derived from state-of-the-art pre-trained language models, by fine-tuning Bidirectional Encoder Representations from Transformer (BERT)-based sequence classification models.Results: We compared the utility of speech transcript representations obtained from recent natural language processing models (i.e., BERT) to more clinically-interpretable language feature-based methods. Both the feature-based approaches and fine-tuned BERT models significantly outperformed the baseline linguistic model using a small set of linguistic features, demonstrating the importance of extensive linguistic information for detecting cognitive impairments relating to AD. We observed that fine-tuned BERT models numerically outperformed feature-based approaches on the AD detection task, but the difference was not statistically significant. Our main contribution is the observation that when tested on the same, demographically balanced dataset and tested on independent, unseen data, both domain knowledge and pretrained linguistic models have good predictive performance for detecting AD based on speech. It is notable that linguistic information alone is capable of achieving comparable, and even numerically better, performance than models including both acoustic and linguistic features here. We also try to shed light on the inner workings of the more black-box natural language processing model by performing an interpretability analysis, and find that attention weights reveal interesting patterns such as higher attribution to more important information content units in the picture description task, as well as pauses and filler words.Conclusion: This approach supports the value of well-performing machine learning and linguistically-focussed processing techniques to detect AD from speech and highlights the need to compare model performance on carefully balanced datasets, using consistent same training parameters and independent test datasets in order to determine the best performing predictive model.


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